Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus-PAV isolate 06ZZ4 RNA-dependent RNA polymerase, P1, aphid transmission protein, coat protein, movement protein, and P6 genes, complete cds.
ACC No: EU332335
Dated: 2011-07-07 | Length: 5709 | CRC: -1936322130
ID EU332335; SV 1; linear; genomic RNA; STD; VRL; 5709 BP.
XX
AC EU332335;
XX
DT 22-JAN-2008 (Rel. 94, Created)
DT 07-JUL-2011 (Rel. 109, Last updated, Version 2)
XX
DE Barley yellow dwarf virus-PAV isolate 06ZZ4 RNA-dependent RNA polymerase,
DE P1, aphid transmission protein, coat protein, movement protein, and P6
DE genes, complete cds.
XX
KW .
XX
OS Barley yellow dwarf virus-PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-5709
RX PUBMED; 21326861.
RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.;
RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf
RT virus-PAV";
RL PLoS One 6(2):E16896-E16896(2011).
XX
RN [2]
RP 1-5709
RA Liu S., Wang X., Liu Y., Zhou G.;
RT "Population genetic diversity of BYDV-PAV from China";
RL Unpublished.
XX
RN [3]
RP 1-5709
RA Liu S., Wang X., Liu Y., Zhou G.;
RT ;
RL Submitted (07-DEC-2007) to the INSDC.
RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of
RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China
XX
DR RFAM; RF00434; BTE.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5709
FT /organism="Barley yellow dwarf virus-PAV"
FT /host="wheat"
FT /isolate="06ZZ4"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="China:Zhengzhou"
FT /db_xref="taxon:12040"
FT CDS join(142. .1161,1161. .2747)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /db_xref="GOA:B0FL18"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FL18"
FT /protein_id="ABY73709.1"
FT /translation="MLLFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEFAEKEEEIEEARSLLRLLTAQKSKSGVEEAWTD
FT FFLKSRGGVYAPLNCEPKSIELEAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW
FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFTAPTNIADLYEFTEVSKVETGLTKETTR
FT VVNGEEETFTVPLVEDVRRIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV
FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF
FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKASSNINYLTQTHLGLVYKAPNASLHNA
FT LVAIERRVFTVGKGDSAIYPPHPECDIFSETMGYFSESIVHKVGYCKTHTPQQLALSYS
FT AGKRAQYFKAIESLKKEPYQIKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT
FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIARKWQKFASPVAIGVDASRFDQHV
FT SEQALKWEHGIYNGIFGDTELALALEHQLVNNIKMFVEDKMLTFKVRGHRMSGDINTSM
FT GNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERANEHLFSGMYDHFLKYGFNMVTE
FT TPVYELGELEFCQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG
FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR
FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENNSHNEY"
FT CDS 142. .1164
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /db_xref="GOA:B0FL19"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FL19"
FT /protein_id="ABY73710.1"
FT /translation="MLLFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEFAEKEEEIEEARSLLRLLTAQKSKSGVEEAWTD
FT FFLKSRGGVYAPLNCEPKSIELEAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW
FT NDLRSRLQLVKSVKDEAKDNIKAASKIGVEFTAPTNIADLYEFTEVSKVETGLTKETTR
FT VVNGEEETFTVPLVEDVRRIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV
FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF
FT "
FT CDS 2906. .4846
FT /codon_start=1
FT /transl_except=(pos:3503. .3505,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /db_xref="GOA:B0FL20"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B0FL20"
FT /protein_id="ABY73714.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA
FT RGRRPGSIFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRATEIGGTQFQ
FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPAPEP
FT KPEPTPAPPPKRFFEYVGTPVGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF
FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW
FT GVGNYKGCVFTNFLATNTWRPGHKGLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY
FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMTRHSECPTRVNNIL
FT IDEGYCQPLSTITDQGLCDVQTPGQDQEVVEEDRQTVSTESDIALKEYEAATAEIPDAG
FT EDALPSREQLSSKPVDTSGEEIPKPRPPSNEVLGVYQGQPIYAEDVPPVARQKLRDAAK
FT APSTLLYDKTPKRSKSILSRFIEGNRSSVESAAPSTATTSNLTREQLREYTRIRNTLGL
FT TAAKAYKAQFS"
FT CDS 2906. .3505
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /db_xref="GOA:B0FL21"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:B0FL21"
FT /protein_id="ABY73711.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA
FT RGRRPGSIFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRATEIGGTQFQ
FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK"
FT CDS 2946. .3407
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B0FKL0"
FT /protein_id="ABY73712.1"
FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA
FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL
FT RRALCLLNSTPRASNQPYLATLTHSPSANPPQSPSAQRRLEGPSSRRHR"
FT CDS 4975. .5097
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /db_xref="InterPro:IPR009426"
FT /db_xref="UniProtKB/TrEMBL:B0FL23"
FT /protein_id="ABY73713.1"
FT /translation="MDDLRVIALCALSPTILFTIVLVSSWCASCCKFIDAACSV"
XX
SQ Sequence 5709 BP; 1611 A; 1377 C; 1356 G; 1365 T; 0 other;
eu332335 Length: 5709 07-JUL-2011 Type: N Check: 1515 ..
1 tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca
51 cactcgtttt gtaatcgaga agtagttgca atagagtcct acagttgctt
101 gacacgcctg tagccccctt cttccctttt ctcccaccac catgttgctt
151 tttgagatgc ttatcggcgc cagtgtcaag gctgtcaaag acttcatcag
201 ccactgttat tctaggctaa agagtatata ctactctttt aaaagatggc
251 tgcttgaaat atccgggcaa tttaaggccc atgacgcctt tgtcaacatg
301 tgctttgggc acatagccga cattgaagac ttcgaggcgg aactcgctga
351 ggagttcgct gagaaggagg aggagatcga ggaagcgagg agcttgctcc
401 gcttactgac tgcccagaag tcaaaatctg gggtggagga ggcttggacc
451 gacttctttt tgaagtcgag aggcggcgtt tatgcgccac ttaactgcga
501 gcctaaatcc attgagcttg aggcgaaagc ggataagctc gaaaaactcc
551 ttgaggacat gcatctattc gaggtgcgcg cggccaaaac ctacatcaaa
601 gagaagggcc gcggattcat caactgctgg aacgacttgc gatcacggtt
651 gcagttggtg aagtcggtta aggatgaggc caaagataac attaaggcgg
701 cctccaaaat tggtgtcgag ttcacagctc ctaccaatat tgctgatctc
751 tacgagttta ctgaagtatc aaaggtagag acaggtctaa ccaaggaaac
801 caccagggtt gtcaacggtg aggaagagac attcacagta cccctggttg
851 aagatgtccg gagaatcaag gatgatgagg tcagcaggga gagtgcctcc
901 aattggatca gggaggttat taaattgaaa aattccaccc tttctgctga
951 cgagctttcc ctggcaacca tcgccaggta tgtagaaaat ttaggggaaa
1001 aatacaaact tgacattgct tccaaaacat atctcaagca atgtgcaatg
1051 atttctgtac caattccctc ccaaaaagac ataaaaacaa agatggtgat
1101 ccagagccct gctgcccgtg cacttcgtga gcgcgtggca gtccttgatt
1151 cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat
1201 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccggtta
1251 cgtaaggcta gtagtaatat taattacctt actcaaaccc atctaggtct
1301 agtatacaaa gctcctaatg catccctgca caatgcgctc gtagctatcg
1351 aaaggagggt gtttacagta ggaaaggggg attctgccat ttaccccccc
1401 cacccggaat gcgatatttt ctccgaaaca atgggctatt tttctgagtc
1451 cattgttcat aaggtgggat actgcaaaac acacactcca cagcaattgg
1501 ctcttagtta cagtgcaggg aaaagggccc agtatttcaa agccattgag
1551 tccttgaaga aggaacctta tcaaattaag gactcaaatg ttcaggcatt
1601 cctcaagaag gagaaacact ggatgaccaa agccatcgcc ccgcgcctga
1651 tttgcccccg ctccaagcgg tacaacatca tccttggaac tcgtttaaag
1701 ttcaacgaga agaagatcat gcatgccatt gacggtatgt ttggatcccc
1751 cactgtgctt tcaggctatg acagctttac ccaaggcaga atcatagcca
1801 gaaagtggca aaagtttgca tcccccgttg ctatcggtgt tgatgctagc
1851 cgctttgacc aacacgtgtc tgagcaggcg cttaagtggg aacacgggat
1901 atacaatggc atttttggcg acactgaatt ggccctcgcc ctcgaacatc
1951 aacttgtgaa taatatcaaa atgttcgttg aagacaagat gctaactttc
2001 aaagttaggg gccacaggat gtcaggggac ataaatacca gcatgggaaa
2051 caagctcatc atgtgtggca tgatgcacgc ttactttaag aagctgggtg
2101 ttgaagcaga actatgtaac aatggagatg attgtgtcat cataactgag
2151 agggctaatg aacacctttt cagtggaatg tatgaccatt tcctcaaata
2201 cggcttcaac atggtgacgg aaaccccggt ttacgaactc ggggagcttg
2251 aattttgcca atccaaaccc gtcagaattg gtggtaatta tagaatggtc
2301 cgcagacccg attgcatagg aaaagatagc aacacacttt tgagcatgcg
2351 caatgaatcc gacgtcaaaa gttatatgtc ggctgtggct cagtgtggtc
2401 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgttgcctg
2451 tacagaagct cggggtacaa aaaagtaagc gaggaataca tcaaaaacgt
2501 catatcatat ggaacagatg aacgccttca aggtagacgt acctttgagg
2551 agacacctat caccacagac aatcgtatgt catattggga atcatttgga
2601 gttgacccta agattcaaca acttgtcgag aggtactacg acaatcttac
2651 ggtaagtgcc caactccaga gtgtgaaggt gacaactcca catctgcaat
2701 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta
2751 ccaaatctta gccgggtttg ggatagggtt tatcgctagt attccctgta
2801 cattagctct cacgtacttt atttacaata aagtttccaa caccactaga
2851 gaggtggtga ttgataccta caataaagct tcagacacca ctagagaggt
2901 ggtgaatgaa ttcagtaggc cgtagaggac ctagaagagc aaacaatggc
2951 acacgaaggc ggcgccgtcg agcaattcgg ccagtggttg tggtccagcc
3001 caatcgaaca ggacccagac gacgaaatgc tcgacgcgca agaggaagaa
3051 ggccaggttc tatatttgga ccaaaacgcg gggctgaggt attcgtattc
3101 tcagtcgaca accttaaggc caactcctcc gggatcctca aattcggtcc
3151 cgatttatcg caatgcccag cggtttcaga cggagtactt aagtcctacc
3201 acaattacaa gatctcaagt atcaacgttg agtttagaac acacgcgtcc
3251 gccactacgt cgggcgctat gtttattgaa ctcgacacct cgtgcaagca
3301 atcagcctta tctagctaca ttaactcatt caccatcagc aaatccgcct
3351 caaagtcctt ccgcgcaacg gagattggag ggacccagtt ccaggcgaca
3401 tcggtgaatc aattcttttt attgtataag gcaaatggca ctaccactga
3451 cattgcaggg cagttcatta tcaggattga gctccacctg atgactgcca
3501 aataggtaga ctcctcaaca ccggaaccaa agcccacacc agccccaaca
3551 cctgcccctg cccctgagcc aaaaccagag cccacacctg cacctccccc
3601 caagcgtttc tttgagtatg ttggaactcc agttggggtc atatctactc
3651 gagaaaacac tgatagtata tcggtgtcta agctcggcgg ccagtcgatg
3701 cagtatattg aaaacgagaa gtgtgaaacc aaaaccatcg actccttctg
3751 gagcacaaac aacaacgttt cggcacaagc tgccttcgtt tttccagtac
3801 cagaggggtc gtacagcgtg aacatctcgt gtgaaggttt acaatccgtt
3851 gaccacatcg gtggcaatga ggatggctat tggattgggc tcattgccta
3901 ttccaattcg tcgggtgaca actggggtgt aggtaactat aaagggtgtg
3951 tgtttacaaa ttttctggca acgaatacct ggagaccagg acacaaaggt
4001 ttaaaactta atgattgcca gttcacagac ggacaaatag ttgaaaggga
4051 tgcagttatg tctttccacg tagaagcttc tggcaaagat gcctgctttt
4101 acctgatggc tcccaagaca atgaaaacag acaagtacaa ctatgttgtc
4151 tcgtatggag ggtacacgaa caaaagaatg gaattcggta ccatctctgt
4201 aacatgtgat gaatccgatg ttgaggcact tcgcatgact cggcactctg
4251 agtgccctac ccgcgtaaat aatattttaa ttgatgaggg atattgtcaa
4301 cctctttcca ccataaccga ccaagggctg tgtgacgtgc aaactcccgg
4351 ccaagatcaa gaggtggttg aggaagacag acaaactgtt tccactgaat
4401 ctgatatagc gctcaaggag tatgaagcag ccaccgctga aatccctgac
4451 gctggagagg atgctttgcc ctctcgggaa caactctcat ctaaaccagt
4501 tgacacgtca ggggaggaga tccccaaacc cagacctcca agcaatgagg
4551 ttctgggtgt ttaccaagga cagcccattt atgctgaaga cgtgccacct
4601 gttgctaggc aaaagttacg tgatgccgcc aaagcacctt ctaccctgtt
4651 gtacgataag acccccaaac ggtccaaatc tattttgtcc aggtttatag
4701 aagggaatag gtcctctgta gaatctgctg ccccctctac tgctactacc
4751 tccaatctta ctagggagca gcttcgggaa tatacccgca ttaggaatac
4801 cttaggttta acagctgcaa aggcgtacaa ggctcaattc tcgtgaagac
4851 aacaccactc gcacaaatcg gatcctggga aacaggcaga acttcggttc
4901 gtaagctcgg gtgactggaa ggtgggctgt caacccacca ccgactcacc
4951 gccgtatcgt actgtgtgtg gccgatggat gatcttcgcg ttatcgccct
5001 ctgtgctctg tcaccaacta tactgtttac cattgtgttg gtgagtagtt
5051 ggtgtgcaag ctgttgtaag ttcatagacg cagcttgttc tgtgtaagct
5101 gcaaccaaaa atatcgggca gcttctgctc agtgagagga ttaacgaccc
5151 tcagtaatgg ctggtcctgg caggcctgaa taacctgcta taggacaact
5201 ggaaacccac cagtgatcaa ataaggtagc ttacttctga gctgtacact
5251 gtccctgcgc aatcggggta aacaactata accacccaac tcgatgaaac
5301 gagagtggag gtggcggagt gggtgacttc gtgatgtaca cccgagcgtc
5351 aggtttgaag acgccataaa acacaacgag atgagaacct cgttataaaa
5401 gttcctcggc tgatacaccc agtcgactgg acctgctggc atacccttga
5451 tacgaaacaa gggcttctga gagccactac ctgtgatgca aggtagggta
5501 agagtcttag caacctctgt acttggaagt ggacataaac catagcaatc
5551 cagcagcatc ccagaagaga gttttcctca ccaggtgaaa acgtgccacg
5601 ggcctgtttc aagcaatcta gctctgcttg aaacagtatc ccatagaagc
5651 aattctacgg ggggactgga ttctgactgc cgacactcgc aagagaagtt
5701 cggcatccc