Sequence of DPV Tomato leaf curl Vietnam virus
Tomato leaf curl Vietnam virus isolate HA segment DNA A, complete sequence.
ACC No: EU368372
Dated: 2008-01-31 | Length: 2747 | CRC: 1825753345
ID EU368372; SV 1; circular; genomic DNA; STD; VRL; 2747 BP.
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AC EU368372;
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DT 22-JAN-2008 (Rel. 94, Created)
DT 31-JAN-2008 (Rel. 94, Last updated, Version 2)
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DE Tomato leaf curl Vietnam virus isolate HA segment DNA A, complete sequence.
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KW .
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OS Tomato leaf curl Vietnam virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2747
RA Pandey P., Vinh D.N., Mukherjee S.K.;
RT ;
RL Submitted (28-DEC-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Molecular Biology, ICGEB, Aruna Asaf Ali Marg, New Delhi, Delhi
RL 110067, India
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FH Key Location/Qualifiers
FH
FT source 1. .2747
FT /organism="Tomato leaf curl Vietnam virus"
FT /segment="DNA A"
FT /specific_host="tomato"
FT /isolate="HA"
FT /mol_type="genomic DNA"
FT /country="Viet Nam"
FT /db_xref="taxon:208177"
FT gene 133. .483
FT /gene="AV2"
FT CDS 133. .483
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="ABY71548.1"
FT /translation="MWDPLLNEFPETVHGLRCMLAIKYLQLVENTYSPDTLGYDLIRDL
FT ILVIRARDYVEASRRYSHFHSRIQGASPAELRQPVYQPCCCPHCPRHKQKEVMGESAHV
FT PQAQDVQKLQKP"
FT gene 293. .1066
FT /gene="AV1"
FT CDS 293. .1066
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ABY71549.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYTNRAVAPTVLVTNKRRSW
FT VNRPMYRKPKMYRSYKSPDVPRGCEGPCKVQSFKGGPDLAHVGKVICVSDVTCGNGVTN
FT RVGETFCIKSVYVSGKIGMDENIKTKNHTNTVMFFLVRDRRPFGTPHDFGQVFNMHDNE
FT PSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAEYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1063. .1467)
FT /gene="AC3"
FT CDS complement(1063. .1467)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /note="ren"
FT /protein_id="ABY71551.1"
FT /translation="MDSRTGELITATQAENGVFTWEITNPLYFKITELQNRPFLSDNDI
FT VTVRIPFNYNLRKALGMHQCFLDFRIWTNSHLQTGRFLRVFRTQVLKFLNNLGVISLNN
FT VIRAVNYVLWDALTQTTFVNSSHVIKFNLY"
FT gene complement(1208. .1615)
FT /gene="AC2"
FT CDS complement(1208. .1615)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /note="suppressor"
FT /protein_id="ABY71552.1"
FT /translation="MQSSSASPSHCTQVPIKVQHRIAKKKITRRRRIDLPCGCSYFXAL
FT NCANHGFTHRGTHHCNSGREWRFYLGDNKSPVFQDNGTTKQALPIGQRHSDGQDPIQLQ
FT PEESTGDAPMFSGLPDMDELTPSDWSFLKSI"
FT gene complement(1515. .2603)
FT /gene="AC1"
FT CDS complement(1515. .2603)
FT /codon_start=1
FT /gene="AC1"
FT /product="rep protein"
FT /protein_id="ABY71553.1"
FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQLKNLETPVNKLFIR
FT ICREFHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPSRSAHFHPNIQAAKSSTDVKAYM
FT DKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFH
FT NLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSSAARPLRPISIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGEPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNTALKSWAIKNAVFVSITEPL
FT YSSTYQSPAQDSEEENNQETED"
FT gene complement(2153. .2446)
FT /gene="AC4"
FT CDS complement(2153. .2446)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ABY71550.1"
FT /translation="MELLTCMFSSNSKGNSNAKTKDSSISHPQAGQHISIRTFRQLKAQ
FT QMSKPIWTKTETCLIMEFSRSMEDRLEEVASLQTTHMPRQSIQGPKHRPSIY"
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SQ Sequence 2747 BP; 724 A; 563 C; 614 G; 845 T; 1 other;
eu368372 Length: 2747 31-JAN-2008 Type: N Check: 2639 ..
1 accggatggc cgcgattttt tttcatgtgg tcccccccac tattatttgt
51 cgggccaata cagacgctcc ctcagagctt atttatgtaa cggtccccta
101 taaaacttgg tccccaagta ctcattccaa acatgtggga tccgctttta
151 aacgagtttc ccgaaactgt tcacggttta aggtgtatgc tagcgattaa
201 atatttgcaa ttagtagaaa atacatactc tcccgataca ttagggtacg
251 atttaatacg tgatttaatc ttagtcattc gtgccaggga ttatgtcgaa
301 gcgtcccgca gatatagtca tttccactcc cgcatccaag gtgcgtcgcc
351 ggctgaactt cgacagcccg tataccaacc gtgctgttgc ccccactgtc
401 ctcgtcacaa acaaaaggag gtcatgggtg aatcggccca tgtaccgcaa
451 gcccaagatg tacagaagtt acaaaagccc tgatgttcca cggggatgtg
501 aaggcccatg taaagtccag tcctttaaag ggggtcctga tttggcccat
551 gtagggaagg taatttgtgt gtctgatgtt acatgtggta acggggtgac
601 taatcgcgtt ggggagacgt tttgtattaa gtcagtttat gtttcgggta
651 agatcgggat ggatgagaac attaagacga agaatcatac taatactgtc
701 atgttctttt tagtacgtga tagaagacct ttcggaactc cccacgattt
751 tggtcaggtg tttaacatgc atgataacga gccaagtaca gccactgtga
801 agaacgataa cagagatcgt tttcaagttc ttcgtcgatt tcaggcaact
851 gttactggtg gtcagtatgc aagcaaggag caagcaatag ttaggaagtt
901 tatgaaggtg aacaaccatg tgacgtataa tcatcaagag gctgcggagt
951 atgataacca cacagagaat gctctgttat tgtatatggc atgtactcat
1001 gctagtaatc cagtgtatgc tactttaaaa atcaggatct atttctatga
1051 ttctgttcag aattaataaa gattaaattt tattacatga gaactgttta
1101 caaatgttgt ttgcgttaat gcgtcccata atacataatt tactgctctt
1151 attacattat tcaaactaat tacacccaaa ttattgagaa acttcaaaac
1201 ttgtgtccta aatactctta agaaacgacc agtctgaagg tgtgagttcg
1251 tccatatccg gaagtccaga aaacattggt gcatccccag tgctttcctc
1301 aggttgtagt tgaatgggat cctgaccgtc actatgtcgt tgtccgatag
1351 gaagggcctg ttttgtagtt ccgttatctt gaaatacagg ggatttgtta
1401 tctcccaggt aaaaacgcca ttctctgcct gagttgcagt gatgagttcc
1451 cctgtgcgtg aatccatggt tggcgcagtt aagtgcgntg aaataagaac
1501 aaccacaggg aaggtcaatc ctccgtctcc tggttatttt cttcttcgct
1551 atcctgtgct ggactttgat aggtacttga gtacagtggc tcggtgatgc
1601 tgacgaagac tgcattcttt attgcccacg actttaatgc agtattcttt
1651 tcttcgtcta ggtattcttt atagcttgag ttgggccctg gattgcacag
1701 gaagatagct ggaatgccac ctttaatttg aactggttct ccgtactttg
1751 tgttgctttg ccagtccctc tgggccccca tgaattcttt aaaatgcttt
1801 aggtagtgcg gatcaacgtc atcaatgacg ttataccagg catcattact
1851 gtacactttt ggactcaaat caagatgacc acacagataa ttgtgtggac
1901 ccaatgatcg agcccacatc gtcttccccg tcctgctatc accctctatt
1951 actatactta ttggtcgtaa tggccgcgca gcggaactga cgacgttctc
2001 tgcagcccat tcttcgagtt cctctgggac tcgatcaaac gaagaagaag
2051 aaaaaggcga aacgtaaacc tccattggag gagtaaaaat tctatctaaa
2101 ttactattta aattatggaa ttgtaaaaca aaatctttgg gagctttctc
2151 ccttaatata ttgagggccg atgctttgga ccctgaattg attgcctcgg
2201 catatgcgtc gtttgcagac tggcaacctc ctctagccga tcttccatcg
2251 atctggaaaa ctccatgatc aagcacgtct ccgtctttgt ccatataggc
2301 tttgacatct gttgagcttt tagctgcctg aatgttcgga tggaaatgtg
2351 ctgacctgct tggggatgtg agatcgaaga atctttggtt tttgcattgg
2401 aatttccctt cgaattggat gagaacatgc aggtgaggag ttccatcttc
2451 gtggaattct ctgcagatgc ggataaatag tttatttact ggggtttcta
2501 ggtttttaag ttgggaaagt gcttcttctt tagtgagaga gcagtgtgga
2551 tatgtgagga aataattttt ggcatttatt ctgaatttat taggaggagc
2601 cattgactgg tcaatcggtg tctcttaaac ttggctatgc aattggtgtc
2651 tggtgtctta tttatatgtg gacaccaaat ggcattatcg taattcccaa
2701 aagaaattca aaattcaaat tggtaaagcg gccatccgta taatatt