Sequence of DPV Tobacco etch virus
Tobacco etch virus isolate Bodles 2 HC-Pro protein (HC-Pro) gene, partial cds.
ACC No: EU418780
Dated: 2008-02-13 | Length: 1377 | CRC: -538323467
ID EU418780; SV 1; linear; genomic RNA; STD; VRL; 1377 BP.
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AC EU418780;
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DT 13-FEB-2008 (Rel. 94, Created)
DT 13-FEB-2008 (Rel. 94, Last updated, Version 1)
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DE Tobacco etch virus isolate Bodles 2 HC-Pro protein (HC-Pro) gene, partial
DE cds.
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KW .
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OS Tobacco etch virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1377
RA Spence A.;
RT "HC-Pro Amplification of TEV Infecting Peppers in Jamaica";
RL Unpublished.
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RN [2]
RP 1-1377
RA Spence A.;
RT ;
RL Submitted (21-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Department of Basic Medical Sciences, Biochemistry Section, The University
RL of the West Indies, Molecular Biology Bldg., 4 St. Johns Close, Mona,
RL Kingston 7, Jamaica
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FH Key Location/Qualifiers
FH
FT source 1. .1377
FT /organism="Tobacco etch virus"
FT /specific_host="Scotch bonnett peppers"
FT /isolate="Bodles 2"
FT /mol_type="genomic RNA"
FT /country="Jamaica:Bodles Agriculture Research Station, St.
FT Catherine and UWI Botany Gardens, St. Andrew"
FT /db_xref="taxon:12227"
FT gene <1. .>1377
FT /gene="HC-Pro"
FT CDS <1. .>1377
FT /codon_start=1
FT /gene="HC-Pro"
FT /product="HC-Pro protein"
FT /protein_id="ABZ80918.1"
FT /translation="SDKSISEAFFIPYSHKFLELRPDGISHECTRGVSVERCGEVAAIL
FT TQALSPCGKITCKRCMVETPDIVEGESGESVTNQGKLLAMLKEQYPDFPMAEKLLTRFL
FT QQKSLVNTNLTACVSVKQLIGDRKQAPFTHVLAVSEILFKGNKLTGADLEEASTHMLEI
FT ARFLNNRTENMRIGHLGSFRNKISSKAHVNNALMCDNQLDQNGNFIWGLRGAHAKRFLK
FT GFFTEIDPNEGYDKYVIRKHIRGSRKLAIGNLIMSTDFQTLRQQIQGETIERKEIGNHC
FT ISMRNGNYVYSCCCVTLEDGKAQYSDLKHPTKRHLVIGNSGDSKYLDLPVLNEEKMYIA
FT NEGYCYMNIFFALLVNVKEEDAKDFTKFIRDTIVPKLGAWPTMQDVATACYLLSILYPD
FT VLRAELPRILVDHDNKTMHVLDSYGSRTTGYHMLKMNTTSQLIEFVHSGLVSEMKTFNV
FT G"
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SQ Sequence 1377 BP; 443 A; 268 C; 306 G; 360 T; 0 other;
eu418780 Length: 1377 13-FEB-2008 Type: N Check: 189 ..
1 agcgacaaat caatctctga ggcattcttc ataccatact ctcataaatt
51 cttggagttg agaccagatg gaatttccca tgagtgtaca agaggagtat
101 cagttgagcg gtgcggtgag gtggctgcaa tcctgacaca agcactttca
151 ccgtgtggta agatcacatg caaacgttgc atggttgaaa cacctgacat
201 tgttgagggt gagtcgggag aaagtgtcac caaccaaggt aagctcctag
251 caatgctgaa agaacagtac ccagatttcc caatggccga aaaattgctc
301 acaaggtttt tgcaacagaa atcactagta aatacaaatt tgacagcctg
351 cgtgagcgtc aaacaactaa ttggtgaccg caaacaagct ccattcacac
401 atgtactggc tgtcagcgaa attctgttca aaggcaataa actaacaggg
451 gctgatctcg aagaggcaag cacacatatg cttgaaatag caaggttctt
501 gaacaatcgc actgaaaata tgcgcattgg ccaccttggt tctttcagaa
551 ataaaatctc atcgaaggcc catgtgaata acgcactcat gtgtgataat
601 caacttgatc agaatgggaa ttttatttgg ggactaaggg gtgcacacgc
651 aaagaggttt cttaaaggat ttttcactga gattgaccca aatgaaggat
701 acgataagta tgttatcagg aaacatatca ggggtagcag aaagctagca
751 attggcaatt tgataatgtc aactgacttc cagacgctca ggcaacaaat
801 tcaaggcgaa actattgagc gtaaagaaat tgggaatcac tgcatttcaa
851 tgcggaatgg taattacgtg tattcatgtt gttgtgttac tcttgaagat
901 ggtaaggctc aatattcgga tctaaagcac ccaacgaaga gacatctggt
951 cattggcaac tctggcgatt caaagtacct agaccttcca gttctcaatg
1001 aagagaaaat gtatatagct aatgaaggtt attgctacat gaacattttc
1051 tttgctctac tagtgaatgt caaggaagag gatgcaaagg acttcaccaa
1101 gtttataagg gacacaattg ttccaaagct tggagcgtgg ccaacaatgc
1151 aagatgttgc aactgcatgc tacttacttt ccattcttta cccagatgtc
1201 ctgagagctg agctacccag aattttggtt gatcatgaca acaaaacaat
1251 gcatgttttg gattcgtatg ggtctagaac gacaggatac cacatgttga
1301 aaatgaacac aacatcccag ctaattgaat tcgttcattc aggtttggtg
1351 tccgaaatga aaacttttaa tgttgga