Sequence of DPV Tobacco etch virus
Tobacco etch virus isolate Bodles 5 HC-Pro protein (HC-Pro) gene, partial cds.
ACC No: EU418783
Dated: 2008-02-13 | Length: 1377 | CRC: 1541205554
ID EU418783; SV 1; linear; genomic RNA; STD; VRL; 1377 BP.
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AC EU418783;
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DT 13-FEB-2008 (Rel. 94, Created)
DT 13-FEB-2008 (Rel. 94, Last updated, Version 1)
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DE Tobacco etch virus isolate Bodles 5 HC-Pro protein (HC-Pro) gene, partial
DE cds.
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KW .
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OS Tobacco etch virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1377
RA Spence A.;
RT "HC-Pro Amplification of TEV Infecting Peppers in Jamaica";
RL Unpublished.
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RN [2]
RP 1-1377
RA Spence A.;
RT ;
RL Submitted (21-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Department of Basic Medical Sciences, Biochemistry Section, The University
RL of the West Indies, Molecular Biology Bldg., 4 St. Johns Close, Mona,
RL Kingston 7, Jamaica
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FH Key Location/Qualifiers
FH
FT source 1. .1377
FT /organism="Tobacco etch virus"
FT /specific_host="Scotch bonnett peppers"
FT /isolate="Bodles 5"
FT /mol_type="genomic RNA"
FT /country="Jamaica:Bodles Agriculture Research Station, St.
FT Catherine and UWI Botany Gardens, St. Andrew"
FT /db_xref="taxon:12227"
FT gene <1. .>1377
FT /gene="HC-Pro"
FT CDS <1. .>1377
FT /codon_start=1
FT /gene="HC-Pro"
FT /product="HC-Pro protein"
FT /protein_id="ABZ80921.1"
FT /translation="SDKAISEAFFIPYSKKFLELRPDGISHECTRGVSVERCGEVAAIL
FT TQALSPCGKITCKRCMVETPDIIEGESGESVTNQGKLLAMLKEQYPDFPMAEKLLTRFL
FT QQKSLVNTNLTACVSVKQLIGDRKQAPFTHVLAVSEILFKGSKLTGADLEEASTHMLEI
FT ARFLNNRTENMRIGHLGSFRNKISSKAHVNNALMCDNQLDQNGNFVWGLRGAHAKRFLK
FT GFFTEIDPNEGYDKYVVRKHIRGSRKLAIGNLIMSTDFQTLRQQIQGETIERKEIGNHC
FT ISMRNGNYVYPCCCVTLEDGKAQYSDLKHPTKRHLVIGNSGDSKYLDFPVLNEEKMYIA
FT NEGYCYMNIFFALLVNVKEEDAKDFTKFIRDTIVPKLGAWPTMQDVATACYLLSILYPD
FT VLSAEVPRILVDHDNKTMHVLDSYGSRTTGDHMLKMNTTSQLIEFLHSGLESEMKTYYV
FT G"
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SQ Sequence 1377 BP; 437 A; 260 C; 313 G; 367 T; 0 other;
eu418783 Length: 1377 13-FEB-2008 Type: N Check: 2722 ..
1 agcgacaaag caatctctga ggcatttttt ataccatact ctaagaaatt
51 tttggagttg agaccagatg gaatttccca tgagtgtaca agaggagtct
101 cagttgagcg gtgcggtgaa gtggctgcaa tcttgacaca agcactttca
151 ccatgtggta agatcacatg taaacgttgt atggttgaga cacctgacat
201 tattgagggt gaatcaggag aaagtgtcac taaccaaggc aagcttcttg
251 caatgctgaa ggagcagtac ccagattttc caatggctga gaaattgcta
301 acaaggtttc tgcaacagaa atcgttggtg aacacaaatt tgacagcctg
351 tgtgagtgtc aaacaactca ttggtgatcg taaacaagct ccattcacac
401 acgtactagc tgttagtgaa attctgttca aaggcagtaa acttacagga
451 gccgatctcg aagaagcaag cacacatatg cttgagattg caaggttttt
501 gaataatcgc actgaaaaca tgcgcattgg ccaccttggc tccttcagaa
551 ataaaatttc atcgaaggcc catgtgaaca acgcactcat gtgtgataat
601 caacttgatc agaatggaaa tttcgtttgg ggcttaaggg gtgcacacgc
651 aaagagattt cttaaaggat ttttcactga gattgatcca aatgaagggt
701 acgacaagta tgtggtcagg aaacatatca ggggtagcag aaagctagca
751 attggcaatt tgataatgtc aactgacttc cagacgctca ggcaacagat
801 ccaaggtgaa acaattgagc gtaaagaaat tggaaatcac tgcatttcaa
851 tgcgaaatgg caattatgtg tacccatgtt gttgcgtaac cctggaagat
901 ggcaaggctc aatattcaga tttgaagcac ccaacgaaga gacacttggt
951 cattggcaac tctggtgatt caaaatacct cgattttcca gttcttaatg
1001 aagagaaaat gtacatagct aatgagggtt attgctatat gaacattttc
1051 tttgctttac tggtgaatgt caaggaagag gatgcaaagg acttcaccaa
1101 gtttataagg gatacaattg tcccaaagct tggggcgtgg ccaacaatgc
1151 aggatgttgc tactgcatgc tacttactct ctattcttta cccagatgtc
1201 ctgagtgctg aagtacccag aatcttagtc gatcatgata acaaaacaat
1251 gcatgtttta gattcgtatg ggtctagaac gacaggagac cacatgttga
1301 agatgaatac aacatcccag ctaattgaat ttcttcattc aggcctagaa
1351 tccgagatga agacttacta tgttgga