Sequence of DPV Soybean dwarf virus
Soybean dwarf virus isolate Wisc4 minor coat protein, major capsid protein, and putative movement protein genes, complete cds.
ACC No: EU419573
Dated: 2009-05-13 | Length: 2073 | CRC: 255357390
ID EU419573; SV 1; linear; genomic RNA; STD; VRL; 2073 BP.
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AC EU419573;
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DT 13-FEB-2008 (Rel. 94, Created)
DT 13-MAY-2009 (Rel. 100, Last updated, Version 2)
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DE Soybean dwarf virus isolate Wisc4 minor coat protein, major capsid protein,
DE and putative movement protein genes, complete cds.
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KW .
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OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
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RN [1]
RP 1-2073
RX PUBMED; 19360376.
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT "Sequence diversity of readthrough proteins of Soybean dwarf virus isolates
RT from the Midwestern United States";
RL Arch. Virol. 154(5):861-866(2009).
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RN [2]
RP 1-2073
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT ;
RL Submitted (22-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Dept. Crop Sci., University of Illinois, USDA-ARS, 1102 S. Goodwin Ave.,
RL Urbana, IL 61801, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2073
FT /organism="Soybean dwarf virus"
FT /isolate="Wisc4"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /isolation_source="virus-infected leaf tissue"
FT /note="acronym: SbDV"
FT /db_xref="taxon:12049"
FT CDS 1. .2073
FT /codon_start=1
FT /transl_except=(pos:601. .603,aa:OTHER)
FT /product="minor coat protein"
FT /note="readthrough protein; translated by readthrough of
FT in-frame termination codon"
FT /db_xref="GOA:B1A419"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B1A419"
FT /protein_id="ABZ80577.1"
FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPKXVDGEPGPKPGPDPTPPPAPPP
FT EPTPAKHERFIVYTGTLSTLISARQNSDSISLYPIRDQRVRYIEDENANWAYIKAQWYS
FT QNSVEAVPMFIYPVPQGTWSVEISCEGYQATSSTTDPHRGKSDGMIAYDDDQTKVWNVG
FT LQNNVTITNNKADADWKYGHPNLTINGERFDQQQVVEKDGTVSFHLVTTGPNASFFLAG
FT PAVKKIAKYNFCISYGAWTDRDMEFGLVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRP
FT HRLQIMPPTREDDSDGYSSSSDSNTYKTDNSPLTVHLVKAGDEENCTTDRSDDVEPILH
FT DADVMKFSGFVGAKDRFMLQGADPIGPGDRSVRRFKPSATLKSAFHSGPTPDELYNAGT
FT EQADHDFEHFVSRGKEKLQDEDPMAKLEREAGDLKPDSDNEDNDYDRTAPVFNPADGDP
FT WSGINIKPRLKDQDMRSTLSTGTLKGGSLRPKKEPTPRFEPAPKSVLDRIRRRQV"
FT CDS 1. .603
FT /codon_start=1
FT /product="major capsid protein"
FT /note="coat protein"
FT /db_xref="GOA:Q3YB88"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q3YB88"
FT /protein_id="ABZ80575.1"
FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK"
FT CDS 17. .586
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:Q3YB87"
FT /protein_id="ABZ80576.1"
FT /translation="MSQYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV
FT KTSSRSTTRGTETPRSQAPSRSRSLS"
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SQ Sequence 2073 BP; 619 A; 490 C; 489 G; 475 T; 0 other;
eu419573 Length: 2073 13-MAY-2009 Type: N Check: 6124 ..
1 atggtcgcgg ttagcaatgt cacaatacaa cgacgacgca atcgtagagc
51 cgcacgaagc gctccacgag ttcagctcat ggctattcca acgaccaccg
101 gcgcaacaca gcgcagaaga agacaacgac gacgaaggag aaataataga
151 ggaggaggca atatttccgg aggatcaggc aaggctcaca cattccagtt
201 ttcgaaggac ggcatcaatg gcagttccaa gggaactatc actttcgggc
251 cgtctttatc agagtgcaag ccactctctg atggaatact caaggcctac
301 catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc
351 ttccacctcg tcaggctcca tcgcttatga gcttgaccca cactgcaagt
401 actccgaaat tcaatcgcta ctcaataaat tctcaattac aaagagcggt
451 tcgaaacgat tccccaccaa ggttatcaat ggcctcgaat ggcatgatac
501 cagtgaagac cagttcaagg tccactacaa ggggaacgga gacgccaaga
551 tcgcaggctc cttcaagatc acgatcgttg tcttaactca gaatcccaaa
601 taggtagacg gagaaccggg gccgaaacca ggtccggacc ccacaccccc
651 accagcacca ccacctgaac cgacgccagc caaacatgaa agattcattg
701 tttacaccgg tacactgtca acactcatca gtgctcgaca gaactcagac
751 agtatatcac tctacccaat tcgagaccag agggtcagat atattgaaga
801 tgagaatgca aactgggcgt atatcaaagc gcaatggtac tcacagaatt
851 ctgtggaagc agtaccaatg tttatctacc cagttccgca aggtacttgg
901 tcagttgaaa tctcatgtga aggttaccag gcaacatcga gcaccacgga
951 tccccaccgg gggaagtccg atggaatgat tgcttatgac gatgatcaaa
1001 ccaaggtgtg gaatgttggt ttacaaaata atgtaaccat aaccaacaat
1051 aaagccgatg ctgattggaa atacggccat cctaatttaa cgattaatgg
1101 tgaacgtttt gaccagcagc aagtagttga gaaagatgga acggtctcgt
1151 ttcatttagt aactactggg cccaatgcga gtttcttttt agccggccct
1201 gccgttaaga agattgccaa gtacaatttc tgtatatcat atggagcttg
1251 gactgaccgc gatatggagt ttggtttggt atctgttgtt ctcgatgaac
1301 atttagaggg tgttagaggt tctcagtacg ttaggaaaac gctaagacca
1351 ggtcacatta gcgtcaatcg tccacaccga ttgcaaatca tgcctcccac
1401 gcgagaggat gatagtgatg gatatagtag tagtagtgat agtaatacat
1451 ataaaacgga caactctccc ttgaccgttc accttgtaaa agcaggtgac
1501 gaggagaatt gtacaacaga tcgatcggac gatgttgaac ccatactcca
1551 tgatgctgat gtcatgaagt tctccgggtt tgttggagct aaagataggt
1601 ttatgttaca gggtgctgat ccaatcggcc ctggtgacag gtctgtccgc
1651 cgcttcaaac cgtccgctac attgaagtct gcgttccatt cgggaccgac
1701 tcctgatgag ttgtataacg ctggcactga acaagcggat cacgacttcg
1751 aacactttgt ctctcgaggc aaggagaagc tacaggatga agatccaatg
1801 gccaaactcg aaagagaggc tggggattta aaacctgata gtgataacga
1851 agataacgat tatgatcgaa ccgctcctgt gttcaaccca gcagatggtg
1901 acccctggtc tggcattaat atcaagcctc gattaaaaga tcaggatatg
1951 aggtctacct tgagcactgg caccttaaaa ggtggttcac tgagaccgaa
2001 gaaagaacca accccaaggt ttgagccagc gccaaagtcc gttttagata
2051 ggattagacg taggcaagtt taa