Sequence of DPV Soybean dwarf virus
Soybean dwarf virus isolate ILsoy2 minor coat protein, major capsid protein, and putative movement protein genes, complete cds.
ACC No: EU419581
Dated: 2009-05-13 | Length: 2073 | CRC: 37550605
ID EU419581; SV 1; linear; genomic RNA; STD; VRL; 2073 BP.
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AC EU419581;
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DT 13-FEB-2008 (Rel. 94, Created)
DT 13-MAY-2009 (Rel. 100, Last updated, Version 2)
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DE Soybean dwarf virus isolate ILsoy2 minor coat protein, major capsid
DE protein, and putative movement protein genes, complete cds.
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KW .
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OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
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RN [1]
RP 1-2073
RX PUBMED; 19360376.
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT "Sequence diversity of readthrough proteins of Soybean dwarf virus isolates
RT from the Midwestern United States";
RL Arch. Virol. 154(5):861-866(2009).
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RN [2]
RP 1-2073
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT ;
RL Submitted (22-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Dept. Crop Sci., University of Illinois, USDA-ARS, 1102 S. Goodwin Ave.,
RL Urbana, IL 61801, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2073
FT /organism="Soybean dwarf virus"
FT /isolate="ILsoy2"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /isolation_source="virus-infected leaf tissue"
FT /note="acronym: SbDV"
FT /db_xref="taxon:12049"
FT CDS 1. .2073
FT /codon_start=1
FT /transl_except=(pos:601. .603,aa:OTHER)
FT /product="minor coat protein"
FT /note="readthrough protein; translated by readthrough of
FT in-frame termination codon"
FT /db_xref="GOA:B1A443"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B1A443"
FT /protein_id="ABZ80601.1"
FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPKXVDGEPGPKPGPDPTPPPAPPP
FT EPTPAKHERFIVYTGTLSTLISARQNSDSISLYSIRDQRVRYIEDENANWTYIKAQWYS
FT QNSVEAVPMFIYPVPQGTWSIEISCEGYQATSSTTDPHRGKSDGMIAYDDDQTKVWNIG
FT VQNNVTISNNKADADWKYGHPNLTINGERFDQQQVVEKDGTVSFHLVTTGPNASFFLAG
FT PAVKKIAKYNYCISYGAWTDRDMEFGMVSVVLDEHLEGVRGSQYIRKTLRPGHISVNRT
FT HRLQEMPPMREDFSEEDNSSSDSNTYKTDNSPLTVHFVKAGDEENYTTDRSDDVEPTLH
FT DADVMKFSGFVGAKDRFTLQGADPIGPGDRSVRRFRPSATLKSAFHSGPTPDELYNAGA
FT EQADHDFEHFVSRGKEKLQDEDPMAKLEREAEDLKPDSDNEDNDYDRTAPMFNPADGDP
FT WSGIKIKPRLKDQDMRSTLSTGTLKGGSLKPKKEPTPRFEPAPKSVLDRIRRRQV"
FT CDS 1. .603
FT /codon_start=1
FT /product="major capsid protein"
FT /note="coat protein"
FT /db_xref="GOA:Q3YB88"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q3YB88"
FT /protein_id="ABZ80599.1"
FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK"
FT CDS 17. .586
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B1A445"
FT /protein_id="ABZ80600.1"
FT /translation="MSQYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPLRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLLMASNGMIPV
FT KTSSRSTTRGTETPRSQAPSRSRSLS"
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SQ Sequence 2073 BP; 629 A; 494 C; 486 G; 464 T; 0 other;
eu419581 Length: 2073 13-MAY-2009 Type: N Check: 9358 ..
1 atggtcgcgg ttagcaatgt cacaatacaa cgacgacgca atcgtagagc
51 cgcacgaagc gctccacgag ttcagctcat ggctattcca acgaccaccg
101 gcgcaacaca gcgcagaaga agacaacgac gacgaaggag aaataataga
151 ggaggaggca atatttccgg aggatcaggc aaggctcaca cattccagtt
201 ttcgaaggac ggcatcaatg gcagttccaa gggaactatc actttcgggc
251 cgtctttatc agagtgcaag ccactctctg atggaatact caaggcctac
301 catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc
351 ttccacttcg tcaggctcca tcgcttatga gcttgaccca cactgcaagt
401 actccgaaat tcaatcgcta ctcaataaat tctcaattac aaagagcggt
451 tcgaaacgat tccccaccaa ggttattaat ggcctcgaat ggcatgatac
501 cagtgaagac cagttcaagg tccactacaa ggggaacgga gacgccaaga
551 tcgcaggctc cttcaagatc acgatcgttg tcttaactca gaatcccaaa
601 taggtagacg gagaaccggg gccgaaacca ggtccggacc ccacaccccc
651 accagcacca ccacctgaac cgacgccagc caaacatgaa agattcattg
701 tttacaccgg tacactgtca acactcatca gtgctcgaca gaactcagac
751 agtatatcac tctactcaat tcgagaccag agggtcagat atattgaaga
801 tgagaatgca aactggacgt acatcaaagc gcaatggtat tcgcagaatt
851 ctgtggaagc agtaccaatg tttatctacc cagttccgca aggtacttgg
901 tcaattgaaa tctcatgtga aggttaccag gcaacatcga gcaccacgga
951 tccccaccgg gggaagtccg atggaatgat tgcttatgac gatgatcaaa
1001 ccaaggtgtg gaatattggt gtgcaaaaca atgtaaccat ttctaataac
1051 aaagccgatg ctgattggaa atacggtcac cctaatttaa caattaacgg
1101 tgaacgtttt gaccagcagc aggtagtcga gaaagatgga acagtttcgt
1151 ttcatttagt aactaccggg cccaacgcga gtttcttttt agctggccct
1201 gccgttaaga agattgccaa gtacaactac tgtatatcat acggtgcttg
1251 gacagaccgc gacatggaat ttggaatggt ctctgttgtt ctcgatgaac
1301 atttagaggg tgttagaggt tctcagtaca ttaggaaaac gctaagacca
1351 ggtcatatta gcgtcaatcg cacccaccga ttgcaagaaa tgcctcccat
1401 gcgagaggat ttcagtgagg aagataatag tagtagtgat agtaatacat
1451 ataaaacgga caactctccc ttgaccgttc actttgtaaa agcaggtgac
1501 gaggagaatt atacaacaga tcgatcggac gatgttgaac ccacacttca
1551 tgatgctgat gtcatgaagt tctccgggtt tgttggagcc aaagataggt
1601 ttacgttgca gggcgctgat ccaatcggcc ctggtgacag atctgtccgt
1651 cgcttcagac cgtctgccac attgaagtct gcgttccatt cgggaccgac
1701 tcctgatgag ttgtacaacg ctggtgctga acaagcggat cacgacttcg
1751 aacactttgt ctcccgaggc aaagagaagc tacaggatga agatccaatg
1801 gccaaactcg aaagagaggc tgaggattta aaacctgata gtgacaacga
1851 agataacgat tatgatcgaa ccgctcctat gttcaaccca gcagatggtg
1901 acccctggtc aggcattaaa ataaagccta gattaaaaga tcaggatatg
1951 aggtccacct tgagcactgg caccttgaag ggtggttcac tgaaaccgaa
2001 gaaagaacca accccaaggt ttgagccggc gccaaagtcc gttttagata
2051 ggattagacg taggcaagtt taa