Sequence of DPV Soybean dwarf virus
Soybean dwarf virus isolate CLAgt2 minor coat protein, major capsid protein, and putative movement protein genes, complete cds.
ACC No: EU419583
Dated: 2009-05-13 | Length: 2073 | CRC: -2107987240
ID EU419583; SV 1; linear; genomic RNA; STD; VRL; 2073 BP.
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AC EU419583;
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DT 13-FEB-2008 (Rel. 94, Created)
DT 13-MAY-2009 (Rel. 100, Last updated, Version 2)
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DE Soybean dwarf virus isolate CLAgt2 minor coat protein, major capsid
DE protein, and putative movement protein genes, complete cds.
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KW .
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OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
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RN [1]
RP 1-2073
RX PUBMED; 19360376.
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT "Sequence diversity of readthrough proteins of Soybean dwarf virus isolates
RT from the Midwestern United States";
RL Arch. Virol. 154(5):861-866(2009).
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RN [2]
RP 1-2073
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT ;
RL Submitted (22-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Dept. Crop Sci., University of Illinois, USDA-ARS, 1102 S. Goodwin Ave.,
RL Urbana, IL 61801, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2073
FT /organism="Soybean dwarf virus"
FT /isolate="CLAgt2"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /isolation_source="virus-infected leaf tissue"
FT /note="acronym: SbDV"
FT /db_xref="taxon:12049"
FT CDS 1. .2073
FT /codon_start=1
FT /transl_except=(pos:601. .603,aa:OTHER)
FT /product="minor coat protein"
FT /note="readthrough protein; translated by readthrough of
FT in-frame termination codon"
FT /db_xref="GOA:B1A449"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B1A449"
FT /protein_id="ABZ80607.1"
FT /translation="MVAVSNVAIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPKXVDGEPGPKPGPDPTPSPTPPP
FT EPTPAKHERFIVYTGTLSTLISARQNSDSISLYSIRDQRVRYIEDENANWAYIKAQWYS
FT QNSVEAVPMFIYPVPQGTWSVEISCEGYQATSSTTDPHRGKSDGMIAYDDDQTKVWNVG
FT VQNNVTITNNKADADWKYGHPNLTINGERFDQQQVVEKDGTVSFHLVTTGPNASFFLAG
FT PAVKKIAKYNFCISYGAWTDRDMEFGLVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRS
FT HRLQEMPPMREDFSEEDNSSSDSNTYKTDNSPLTVHLVKAGDEENYTTDRSDDVEPTLH
FT DADVMKFSGFVGAKDRFTLQGADPIGPGDRSVRRFRPSATLKSAFHSGPTPDELYNAGA
FT EQADHDFEHFVSRGKEKLQDEDPMAKLEREAEDLKPDSDNEDNDYDRTAPVFNPADGDP
FT WSGIKIKPRLKDQDMRSTLSTGTLKGGSLKPKKEPTPRFEPAPKSVLDRIRRRQV"
FT CDS 1. .603
FT /codon_start=1
FT /product="major capsid protein"
FT /note="coat protein"
FT /db_xref="GOA:B1A450"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:B1A450"
FT /protein_id="ABZ80605.1"
FT /translation="MVAVSNVAIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK"
FT CDS 17. .586
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B1A451"
FT /protein_id="ABZ80606.1"
FT /translation="MSQYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQSQRAVRNDSPPRLLMASNGMIPV
FT KTNSRSTTRGTETPRSQAPSRSRSLS"
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SQ Sequence 2073 BP; 628 A; 487 C; 489 G; 469 T; 0 other;
eu419583 Length: 2073 13-MAY-2009 Type: N Check: 9400 ..
1 atggtcgcgg ttagcaatgt cgcaatacaa cgacgacgca atcgtagagc
51 cgcacgaagc gctccacgag ttcagctcat ggctattcca acgaccaccg
101 gcgcaacaca gcgcagaaga agacaacgac gacgaaggag aaataataga
151 ggaggaggca atatttccgg aggatcaggc aaggctcaca cattccagtt
201 ttcgaaggac ggcatcaatg gcagttccaa gggaactatc actttcgggc
251 cgtctttatc agagtgcaag ccactctctg atggaatact caaggcctac
301 catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc
351 ttccacctcg tcaggctcca tcgcttatga gcttgaccca cactgcaagt
401 actccgaaat tcaatcgcta ctcaataaat tctcaatcac aaagagcggt
451 tcgaaacgat tccccaccaa ggttattaat ggcctcgaat ggcatgatac
501 cagtgaagac caattcaagg tccactacaa ggggaacgga gacgccaaga
551 tcgcaggctc cttcaagatc acgatcgttg tcttaactca gaatccaaaa
601 taggtagacg gagaaccggg gccgaaacca ggtccggacc ccacaccctc
651 accaacacca ccacctgaac cgacgccagc caaacatgaa agattcattg
701 tttacaccgg tacactgtca acactcatca gtgctcgaca gaactcagac
751 agtatatcac tctactcaat tcgagaccag agggtcagat atattgaaga
801 tgagaatgca aactgggcgt acatcaaagc gcaatggtat tcacagaatt
851 ctgtggaagc agtgccaatg tttatctacc cagttccaca aggtacttgg
901 tcagttgaaa tctcatgtga aggttaccag gcaacatcga gcaccacgga
951 tccccaccgg gggaagtccg atggaatgat tgcttatgac gatgatcaaa
1001 ccaaggtgtg gaatgttggt gtgcaaaata atgtaaccat aaccaacaat
1051 aaagccgatg ctgattggaa atacggccat cctaatttaa caattaatgg
1101 tgaacgtttt gaccaacagc aagtagtcga gaaagatgga acggtctcgt
1151 ttcatttagt aactactggg cccaatgcga gcttcttttt agccggccct
1201 gccgttaaga agattgccaa gtataatttc tgtatatcat atggagcttg
1251 gacagatcgc gatatggagt ttggtttggt atctgttgtt ctcgatgaac
1301 acttagaggg tgtcagaggt tctcagtacg ttaggaaaac gctaagacca
1351 ggtcacatta gcgtcaatcg ttcccaccga ttgcaagaaa tgcctcccat
1401 gcgagaggat ttcagtgagg aagacaatag tagtagtgat agtaatacat
1451 ataaaacgga caactctccc ttgaccgttc accttgtaaa agcaggtgac
1501 gaggagaatt atacaacaga tcgatcggac gatgttgaac ccacacttca
1551 tgatgctgat gtcatgaagt tctccgggtt tgttggagcc aaagataggt
1601 tcacgttaca gggtgctgat ccaatcggcc ctggtgacag atctgtccgt
1651 cgcttcagac cgtctgccac attgaagtct gcgttccatt cgggaccgac
1701 tcctgatgag ttgtacaacg ctggtgctga acaagcggat catgacttcg
1751 aacactttgt ctcacgaggc aaagagaagc tacaggatga agatccaatg
1801 gccaaactcg aaagagaggc tgaggattta aaacctgata gtgataatga
1851 agataacgat tatgatcgaa ccgctcctgt gttcaaccca gcagatggtg
1901 acccctggtc aggcattaaa ataaagccta ggttaaaaga tcaggatatg
1951 aggtctacct tgagcactgg caccttgaaa ggtggttcac tgaaaccgaa
2001 gaaagaacca accccgaggt ttgagccagc gccgaagtcc gttttagata
2051 ggattagacg taggcaagtt taa