Sequence of DPV Tomato leaf curl Philippines virus
Tomato leaf curl Philippines virus isolate P115, complete genome.
ACC No: EU487039
Dated: 2011-05-01 | Length: 2755 | CRC: 1183653295
ID EU487039; SV 2; circular; genomic DNA; STD; VRL; 2755 BP.
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AC EU487039;
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DT 11-MAR-2008 (Rel. 95, Created)
DT 01-MAY-2011 (Rel. 108, Last updated, Version 3)
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DE Tomato leaf curl Philippines virus isolate P115, complete genome.
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KW .
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OS Tomato leaf curl Philippines virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2755
RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L.,
RA Jan F.J.;
RT "Distribution and genetic diversity of begomoviruses infecting tomato and
RT pepper plants in the Philippines";
RL Ann. Appl. Biol. 158(3):275-287(2011).
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RN [2]
RP 1-2755
RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K.,
RA Jan F.-J.;
RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting
RT Begomoviruses in the Philippines";
RL Unpublished.
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RN [3]
RP 1-2755
RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K.,
RA Jan F.-J.;
RT ;
RL Submitted (13-FEB-2008) to the EMBL/GenBank/DDBJ databases.
RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua,
RL Taina, Taiwan 74199, Republic of China
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RN [4]
RC Sequence update by submitter
RP 1-2755
RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K.,
RA Jan F.-J.;
RT ;
RL Submitted (16-AUG-2010) to the EMBL/GenBank/DDBJ databases.
RL Virology Unit, AVRDC-the World Vegetable Center, P.O. Box 42, Shanhua,
RL Taina, Taiwan 74199, Republic of China
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CC On Aug 16, 2010 this sequence version replaced gi:169640020.
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FH Key Location/Qualifiers
FH
FT source 1. .2755
FT /organism="Tomato leaf curl Philippines virus"
FT /segment="DNA-A"
FT /host="tomato"
FT /isolate="P115"
FT /mol_type="genomic DNA"
FT /country="Philippines:Batangas"
FT /isolation_source="plant with yellow leaf curling symptom"
FT /db_xref="taxon:96054"
FT misc_feature join(2614. .2755,1. .142)
FT /note="intergenic region"
FT gene 143. .487
FT /gene="V2"
FT CDS 143. .487
FT /codon_start=1
FT /gene="V2"
FT /product="pre-coat protein"
FT /db_xref="GOA:B0I510"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B0I510"
FT /protein_id="ACA61070.2"
FT /translation="MWDPLVHPFPESLHGFRCMLAIKYLQSLQNKYSPDTVGHEFLKDF
FT ICILRSKNYAEAFNRYSNVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVMDLQAH
FT VSQAQDVQNV"
FT gene 303. .1079
FT /gene="V1"
FT CDS 303. .1079
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /db_xref="GOA:B0I511"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:B0I511"
FT /protein_id="ACA61071.1"
FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRS
FT WTYRPMFRKPKMYRMYRSRDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLT
FT HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDN
FT EPSTATVKNDNRDRYQVLRKFQATVTGGQYASKEQAIVKRFMKINNHVTYNHQEAAKYD
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1076. .1477)
FT /gene="C3"
FT CDS complement(1076. .1477)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B1PRE0"
FT /protein_id="ACA61074.2"
FT /translation="MDSRTGEPITAAQAENGVYTWTITNPLYFKISQHDKMPFLKNHDI
FT ITVQIQFNHNLRKALGIHQCFLICKIWTHLHPQTWRFLRVFKYQCMKYLYSLGVISINN
FT VIRAVDHVMYNVIQTIDVQISHIIKSNIY"
FT gene complement(1218. .1625)
FT /gene="C2"
FT CDS complement(1218. .1625)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /db_xref="GOA:B1PRC3"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B1PRC3"
FT /protein_id="ACA61073.2"
FT /translation="MQNSSPSRGHSTQVPIKVQHKIAKKRPIRRRRIDLPCGCSYYLGL
FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQDAVLEKPRYHNSTNTVQPQ
FT PEESVGNTSMFSDLQNLDSFTSSDLAFLKSI"
FT gene complement(1525. .2613)
FT /gene="C1"
FT CDS complement(1525. .2613)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /db_xref="GOA:B1PRE2"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:B1PRE2"
FT /protein_id="ACA61072.1"
FT /translation="MAPPRKFQINAKNYFLTYPKCYLTKEETLAQIKTLDTVTNKKFIK
FT ICRELHEDGSPHLHVLIQFEGKYRCTNKRFFDLVSPTRSAHYHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQVDGRSARGGQQSANDAYAKAINTGSKSEALNVIRELAPKDFVLQFH
FT NLNANLDRIFAPPLEVFRCPFLSASFDQVPKELEDWVSENVRDAAARPWRPISIVIEGD
FT SRTGKTMWARSMGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKDYLDEEKNSLLKDWALKNAKFITLTRPL
FT YSGTHQSPAQNSQEETNTQAEN"
FT gene complement(2166. .2456)
FT /gene="C4"
FT CDS complement(2166. .2456)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:B1PRE3"
FT /protein_id="ACA61075.1"
FT /translation="MGALISMCSSSSRGNTDARIRDSSTWYPQPGQHITIQTYRELNQA
FT PTSNHILIRTETPSNGVSFRSMEDLLEGVNNRPMMLTPKQLTQEVSRRLLM"
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SQ Sequence 2755 BP; 725 A; 544 C; 597 G; 889 T; 0 other;
eu487039 Length: 2755 01-MAY-2011 Type: N Check: 225 ..
1 accgtgggcc gcgcaaattt tttttatttt tgggcctaat gggcctttgg
51 atgtcggtct cgaccaatgg aaacgttccc tcatcgctta acaattatgt
101 tgtcctctat ttatttctgc tgcatcagtt ttgtactaaa aaatgtggga
151 tcctctggta catccctttc ctgagagctt acacggcttc agatgtatgc
201 ttgccatcaa atatcttcag agcttacaga ataaatattc tccggacact
251 gttgggcatg agtttttgaa agattttata tgcatattgc gaagtaagaa
301 ttatgccgaa gcgttcaata gatacagtaa cgtcgttgcc aatgtctata
351 acacgtcgga ggctcaatta cgggagtcag tacagtctcc ctgcctctgt
401 ccccactgtc ccagacatgt cttacaagcg aaggtcatgg acttacaggc
451 ccatgtttcg caagcccaag atgtacagaa tgtatagaag ccgtgatgtt
501 cctcgcgggt gtgaaggccc atgtaaggtt cagtcttatg aacagcgtca
551 tgatatagcc catgtgggta aggtcatatg tgtgtctgat gttactcgtg
601 gtaatgggct cacacatcgt gttggaaaga ggttttgtgt aaagtctgtg
651 tatgtgttgg ggaaggtctg gatggatgag aacatcaaga ctaagaatca
701 cactaacact gtcatgtttt ttttagttcg tgataggaga ccctatggga
751 ctccccagga ttttggtcag gtttttaaca tgtatgataa tgagcctagt
801 actgcaactg ttaaaaatga taatagagat cgatatcaag ttcttcgtaa
851 atttcaagct accgtgactg gaggtcagta tgcaagcaag gagcaagcaa
901 tagtcaagag gttcatgaag attaacaacc atgttactta caatcatcaa
951 gaggctgcga agtatgataa tcatacagag aacgctttac tgttgtatat
1001 ggcttgtact catgctagta atccagtgta tgctacgttg aaaatcagaa
1051 tctattttta tgattctgtt cagaattaat aaatattgct ttttattata
1101 tgcgaaattt gtacatctat tgtttgaatt acattgtaca tcacatgatc
1151 gactgcccta attacattgt ttatgctaat aacccctaaa ctatacaaat
1201 acttcataca ctgatattta aatactctta agaaacgcca agtctgagga
1251 tgtaaatgag tccagatttt gcagatcaga aaacattgat gtattcccaa
1301 cgctttcctc aggttgtggt tgaactgtat ttgtactgtt atgatatcgt
1351 ggtttttcaa gaacggcatc ttgtcgtgtt gggatatctt gaaataaagg
1401 ggatttgtta tcgtccaggt atatacgcca ttctctgcct gagctgcagt
1451 gatgggttcc cctgtgcgag aatccatacg aagcgcaatt aagtcctaga
1501 tagtaagagc agccgcaagg aagatcaatt ctccgcctgc gtattggtct
1551 cttcttggct attttgtgct ggactttgat gggtacctga gtagagtggc
1601 ctcgtgaggg tgatgaattt tgcatttttt agtgcccagt ctttgagtag
1651 agaatttttt tcctcatcca agtaatcttt atacgacgac gtaggtcctg
1701 gattgcagag gaagattgtt gggatcccac ctttaatttg aattggtttc
1751 ccgtactttg tgttgctttg ccagtccctt tgggccccca taaactcttt
1801 aaaatgcttt agatagtggg ggtcgacgtc atcaatgacg ttataccagg
1851 catcattact gtacaccttt ggactaaggt ccagatgtcc acacaaataa
1901 ttatgtggac ccatagatct agcccacatc gtcttccccg tcctactatc
1951 tccttctatg acaatactta tgggtctcca tggccgcgca gcggcatccc
2001 taacattctc ggaaacccag tcttcaagtt cttttggaac ttggtcgaaa
2051 gaagcagaaa gaaaaggaca acgaaaaacc tctaaaggag gtgcaaagat
2101 cctatctaaa ttggcattta aattatgaaa ttgtaaaaca aaatcttttg
2151 gagctaactc cctaattaca ttaagagcct ccgacttact tcctgtgtta
2201 attgctttgg cgtaagcatc attggccgat tgttgacccc ctctagcaga
2251 tcttccatcg acctgaaact caccccattc gagggtgtct ccgtccttat
2301 caatatatga tttgacgtcg gagcttgatt tagctccctg tatgtttgga
2351 tggtaatgtg ctgacctggt tggggatacc aggtcgaaga atctcttatt
2401 cgtgcatctg tatttcccct cgaactggat gagcacatgg agatgagggc
2451 tcccatcttc gtgcagttct ctgcagattt tgatgaattt tttgtttgtt
2501 acagtatcta gtgtttttat ctgggcaagg gtttcctctt ttgtaagata
2551 gcatttggga tatgtaagaa aataattttt ggcatttatt tggaattttc
2601 tgggtggtgc catttgactt agtcaatggg tacctattga gaggatttca
2651 ttctactcag ggtatcggta cactggtacc catatatact tggttaccta
2701 atggcataat tgtaattttt ttatgggctt ccaagcggcc cacgactata
2751 atatt