Sequence of DPV Citrus yellow mosaic virus
Citrus yellow mosaic virus isolate AL, complete genome.
ACC No: EU489744
Dated: 2009-06-30 | Length: 7473 | CRC: 31989784
ID EU489744; SV 1; circular; genomic DNA; STD; VRL; 7473 BP.
XX
AC EU489744;
XX
DT 20-APR-2008 (Rel. 95, Created)
DT 30-JUN-2009 (Rel. 101, Last updated, Version 2)
XX
DE Citrus yellow mosaic virus isolate AL, complete genome.
XX
KW .
XX
OS Citrus yellow mosaic virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7473
RX PUBMED; 19444599.
RA Borah B.K., Johnson A.M., Sai Gopal D.V., Dasgupta I.;
RT "Sequencing and computational analysis of complete genome sequences of
RT Citrus yellow mosaic badna virus from acid lime and pummelo";
RL Virus Genes 39(1):137-140(2009).
XX
RN [2]
RP 1-7473
RA Borah B.K., Johnson A.M.A., Saigopal D.V.R., Dasgupta I.;
RT ;
RL Submitted (04-FEB-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Molecular Biology, Delhi University South Campus, Benito Juarez Road,
RL New Delhi, Delhi 110021, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .7473
FT /organism="Citrus yellow mosaic virus"
FT /host="acid lime"
FT /isolate="AL"
FT /mol_type="genomic DNA"
FT /country="India"
FT /db_xref="taxon:174178"
FT CDS 231. .662
FT /codon_start=1
FT /product="unknown"
FT /note="ORF I"
FT /db_xref="InterPro:IPR010746"
FT /db_xref="UniProtKB/TrEMBL:B2L8M4"
FT /protein_id="ACB87148.1"
FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY
FT DRLSLFSRVTIKNFKSIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKAEVKTLVTE
FT IAKQPKLVEAQALQLTENLNQKLDRVEALISKVERWVHS"
FT CDS 659. .1072
FT /codon_start=1
FT /product="unknown"
FT /note="ORF II"
FT /db_xref="UniProtKB/TrEMBL:B2L8M5"
FT /protein_id="ACB87149.1"
FT /translation="MTYQATEKTPTYKRALAATEPINSPSLGFVNPEEYSGGITGTKAL
FT IKQNNLLIQLVVELSVNINSLSEQVDQLAKQLGKQPQQGSSTTALPDDLVDKLRNLSLG
FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ"
FT CDS 1069. .6999
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF III"
FT /db_xref="GOA:B2L8M6"
FT /db_xref="InterPro:IPR018061"
FT /db_xref="UniProtKB/TrEMBL:B2L8M6"
FT /protein_id="ACB87150.1"
FT /translation="MSSSRARTVVEQLPPATTSRVEERDNTPLYDDQIRDYRQWQRRRH
FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIH
FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFINMGIVQVRIQILHRQHEGTTALVV
FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKAYGNWQNG
FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLR
FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPAPVTYNQHDEEIPPDEDEEQIR
FT NHTIALWRENDEVWDTLGEPSGKFDFYVRYTRPAHALQDPAHIIATGWDDLDDNPSPSS
FT PSNNIRTYQTPSPPSSSDENDDMSYLQYLAQQSPVPPPTQDFTNPFSEGGGESTYPYPS
FT FQPPFDLQSDDSYGTLATWSEYDAMSQTNSSPALSPSAKTVFDFDRYSHTTNEDDVVQS
FT AWISENLFRENTGHGEVHNLVPPGPDTPRGDEVKGTQESMAHTVAVTTEGPKQEAEFDY
FT PAFAKLQDHEKCSRPKPKTEKVLSSAISSYTPPSDTAMTPVAYPPAQNIASPSYNPSPQ
FT VPMFEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLSHEVFTSWEAITKAYV
FT AQQGITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMR
FT RVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSE
FT KLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFC
FT SSIPIPGYYGGRSSEKRYGIRRTTTYKGKPHNTHARIEKTKHLRNKKCKCYLCGEEGHF
FT ARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEETGAFEEQCFV
FT FQEECNGTYWLGKRGGYQDLVQISKEIYYCQHEWEENQPIDDPAHVRCYPCKRETTQRA
FT RLHCKLCHITSCLMCGPTYFNRKITVQPIPQAPFNQKGLLQQQQEYIAWCNNEIARLKE
FT EVAFYKQLAQERELQLQLEQSRKELAGADSRRRKDKGVVIDEGSCYFNPEETTRIVAHG
FT DTQVTKTRPVKNMLYNMDVRIEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSF
FT VVNFSGINSKQQVKQKIKPGKMFISEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYG
FT GVRLEGNTITFYKQITSINTRLAAPLLQQEEEEKEEELNLEEHRLIQEMVAYSTERPFV
FT HFQQKFAGLIQELKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLKHVTPQMEG
FT SFRKHVEALLKIGAIRPSKSRHRTTAIIVNSGTSIDPLTGKEVKGKERMVFNYKRLNDL
FT TNKDQYSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEWLV
FT MPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDDILVFSKTEREHEEHLQIMLSICQKNG
FT LILSPTKMKIAQAEIEFLGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLI
FT NYARSYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFI
FT IIETDGCMDGWGGVCKWKLAQYDSRSSEKVCAYASGKFNPPKSTIDAEIRAVMNSLNNF
FT KIYYLDKSSLCLRTDCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNIEHIDGKN
FT NHLADALSRLVTGFVFAEPQCQDKFQDDLGKLEAALLEKKEAPQAMHEEYVSLLTRSAD
FT RITLSLYSMRDSSPSRIYSCRSGKEPMKALICEQKSCLSKGDLGSMKTVHSRSASNQQG
FT NWWPSTSINSVTSEAKRQETTHMPINCPHAIGTTNSCVKWSSC"
FT CDS 1973. .2518
FT /codon_start=1
FT /transl_except=(pos:1973. .1975,aa:Met)
FT /product="unknown"
FT /note="ORF IV"
FT /db_xref="UniProtKB/TrEMBL:B2L8M7"
FT /protein_id="ACB87151.1"
FT /translation="MDPFLSDSIVINQLRIQHLLPIINMMRKYPLMKMKNRSVIIPLRY
FT GVKMMRYGIHWVNLRVNLTFMFAIPDLHMLYKTLPILSLLVGMILMIILLHPVHPTIFV
FT LTKPLPLLPLLTRMMICPTFNTLLSNHLSLLLHRILPILFRKVVGSLPTLTPHFSHHLT
FT YNQMIHMVLWQLGVNMMP"
FT CDS 3953. .4240
FT /codon_start=1
FT /product="unknown"
FT /note="ORF V"
FT /db_xref="UniProtKB/TrEMBL:B2L8M8"
FT /protein_id="ACB87152.1"
FT /translation="MKEIQTVMLSSASQREKKLEHLKNSVLCSRKNVMGHTGLVREVDT
FT RISCKFPKKSTIVSTNGRRINPLMIQRMFDVTLAKGKLLKELAYIVSYAT"
FT CDS 6573. .7037
FT /codon_start=1
FT /product="unknown"
FT /note="ORF VI"
FT /db_xref="UniProtKB/TrEMBL:B2L8M9"
FT /protein_id="ACB87153.1"
FT /translation="MSRQVPGRFREVGSSSSGEERGSASNARRICLPVDQISGPHYPLA
FT LLYEGLVSQQNLLMQVRQRTNEGLNLRTEVMPIQRRLGEYEDCALQECIQSARQLVALH
FT QHKLSYIRGKATRDNAYADKLPTCNRDHEQLCEVVELLEGISERISDTAV"
XX
SQ Sequence 7473 BP; 2323 A; 1620 C; 1653 G; 1877 T; 0 other;
eu489744 Length: 7473 30-JUN-2009 Type: N Check: 9774 ..
1 tggtaacaga gcttggttgt gttcttacaa cgatgggagc ttaaaacctt
51 ccattaggtc tgaggaaaga gttaactgta tggtgtgttt agttcctatt
101 tgtattgtta ttcctttgtt catgatatag aaaacgatca tcgcgaaaag
151 ggtgaaggca ctatatctgg cagcaagagg agagtaagtc cagtgaaacc
201 cttcgcatga cgctaaaggt gatctaatct atgtctagaa tctgggaaga
251 agcaatacaa agatggtatg agacatccca tacagccaat ctcgagtact
301 tagatctagc ttcaaaacca aaagtttcca attccgaaat ctcacacaac
351 cttgcagtag tttacgatcg tttgagtctt tttagccgtg ttaccattaa
401 gaatttcaaa agtatccaag aaaccctaga aaagcaagac cttagaatcc
451 aaaaacttga gtccagtctg aaaaccctaa ctagtgagtt tatagcccat
501 aaacctttat ccaaagctga ggtgaaaacc ttagttacag aaattgccaa
551 acagccaaag cttgttgaag cacaagccct ccagcttaca gaaaacctga
601 accagaagct cgatcgggta gaagccttga tatctaaggt ggaacgttgg
651 gttcattcat gacctatcag gctactgaga aaaccccaac atacaagcgt
701 gctcttgcgg caaccgagcc tattaacagt ccatcacttg gatttgttaa
751 cccagaggaa tattctggtg gtataactgg tactaaagct ctcattaagc
801 aaaacaattt gcttattcag ctcgtagtag agctttctgt caacatcaac
851 agtttgtcag aacaagttga tcagctagca aaacaacttg ggaaacaacc
901 tcagcaaggc tcatcaacaa cagccttacc tgacgatctt gttgacaaac
951 tcagaaacct ttctttaggt actgagaaga agaaggaaaa gcgtggtacc
1001 ttctacgctt acaaagaccc ctacttgatc tacaaggaag aagtagaaaa
1051 gctaaagaag cagcagcaat gagcagtagc cgagcaagaa ccgtggtaga
1101 acaacttcca cctgcgacta cgtcccgagt ggaggagcga gataacaccc
1151 ccctctatga tgatcaaata cgggattaca ggcagtggca gcggcggcgt
1201 cacaacatgg gaaggagatg gaatcaattg ataggtcgac cctacaatca
1251 gaccttggag caggtagtag atcctgaggt agctttacag ttatctatgc
1301 aggaacgtgc aaggctagta ccagcagagg tactttacag atcaaggagt
1351 gatgatcggc accatcaggt ctatatacac agatcagagg aggctatcct
1401 ttgtgttgac ggagatcaag ttgaccggtt actgatacaa ccggaaagtg
1451 ctgaacagct aaacaggagt ggtatgtcct ttatcaatat gggcatagtt
1501 caggttcgga tccagatctt gcacagacag catgagggaa caacagccct
1551 tgtggtgttc agagataatc ggtggcaagg cgatcaatct atattcgcca
1601 ccatggaact tgatttgacc aaaggaatgc aaatggtata cataatccca
1651 gatacaatga tgacagtcag agacttctgc cggaatgttc aaatttccat
1701 attaacaaaa gcatatggga attggcagaa cggtgaggca aatttgcttg
1751 tcacaagggg aatcgttgga cggttatcta atacccctaa tgtggccttt
1801 gcctatcaga tccaaaatgt tacagattat ctagtcagtc atgggattca
1851 ggcgttgcca ggacgacgct attcagctgc agatgtacag ggccagcaat
1901 ggtttctacg accatccaat attccagcag ttccaatggc ccctactaac
1951 gtggatacac gtaacatgat agacggatcc atttctctca gattcaatag
2001 ttatcaacca gctccggatc cagcacctgt tacctataat caacatgatg
2051 aggaaatacc ccctgatgaa gatgaagaac agatccgtaa tcataccatt
2101 gcgctatggc gtgaaaatga tgaggtatgg gatacactgg gtgaaccttc
2151 gggtaaattt gacttttatg ttcgctatac ccgacctgca catgctttac
2201 aagaccctgc ccatattatc gctactggtt gggatgatct tgatgataat
2251 ccttctccat ccagtccatc caacaatatt cgtacttacc aaaccccttc
2301 ccctccttcc tcttctgacg agaatgatga tatgtcctac cttcaatacc
2351 ttgctcagca atcacctgtc cctcctccta cacaggattt taccaatcct
2401 ttttcggaag gtggtgggga gtctacctac ccttacccct catttcagcc
2451 accatttgac ctacaatcag atgattcata tggtactttg gcaacttgga
2501 gtgaatatga tgccatgagc caaactaata gctcacctgc acttagtcct
2551 agtgcaaaaa ctgtttttga ttttgacagg tactcccaca caacaaatga
2601 agatgacgtg gttcaatcag cctggatttc tgaaaatcta tttcgtgaaa
2651 acaccggaca cggtgaagtt cacaatcttg ttccgcctgg accggacacc
2701 cctcggggtg atgaggtcaa aggaacccaa gaatccatgg cccatactgt
2751 tgcagtaacc acagaaggac caaagcagga agctgagttt gactatccgg
2801 cctttgccaa attacaagac catgaaaagt gcagcaggcc taagcccaaa
2851 actgagaaag tcctgtcttc agcaatttct tcatatactc caccaagtga
2901 tactgcaatg acacctgttg cgtacccccc agcgcagaat atagctagcc
2951 caagctacaa cccaagccca caagtaccta tgttcgaagg ttacagccca
3001 aaaagacccc acttcaaaag ggataatcat acttttataa gccttccctc
3051 agcccaacaa aatactgggg ctttatttat catgcctcaa cagataggcc
3101 tgtctcatga ggtcttcacc tcttgggaag caattacaaa agcctatgtt
3151 gctcaacagg gtatcacaga ccctagagat aaggctgact tcattgagaa
3201 catgttgggt ccaacagaga aaataatttg gactcaatgg cgtatgggct
3251 acgctgatga atatgagaac cttgtaacaa cagctgacgg acgtgagggt
3301 actcaaaaca tactctccca gatgcgaagg gtcttttcat tggaagatcc
3351 agcaactggt tcaactgcag tccaagatga agcttacaga gacttggaga
3401 gactcacttg tgattcagtc aagcatatag tccaatactt gaatgacttt
3451 atgcgaattg cagcaaaaac tgggcgcatg ttcataggcc cagaattgag
3501 tgaaaaacta tggctcaaaa tgccaggtga tctaggccaa aggatgaaga
3551 aggcctatga ggaaaaacat ccaggaaaca tcgttggtgt gtgccctcgg
3601 atcttgttcg cttacaagta ccttgaaggc gagtgtaaag atgcagcgtt
3651 cagacgctcc ctgaagaact tatcattttg cagctcaatc cctatcccag
3701 gctattatgg tggtagaagt agtgagaagc gttatggtat aagacgcaca
3751 accacttaca aagggaaacc tcataacaca catgcaagaa ttgaaaagac
3801 aaaacatttg cgcaataaaa agtgcaagtg ttatctttgt ggagaagaag
3851 gtcacttcgc acgggaatgt ccaaatgacc ggcgaaatgt gaagcgagtt
3901 gcaatgtttg aaggactaga tctccctgat gactgtgaga tcgtctctat
3951 tgatgaagga gatccagaca gtgatgctat cttcagcatc tcagagggag
4001 aagaaactgg agcatttgaa gaacagtgtt ttgtgttcca ggaagaatgt
4051 aatgggacat actggcttgg taagagaggt ggataccagg atctcgtgca
4101 aatttccaaa gaaatctact attgtcagca cgaatgggag gagaatcaac
4151 ccattgatga tccagcgcat gttcgatgtt acccttgcaa aagggaaact
4201 actcaaagag ctcgcttaca ttgtaagcta tgccacataa catcctgtct
4251 tatgtgtggc cccacctatt tcaacagaaa gatcactgtc cagccaatac
4301 ctcaagcacc cttcaaccaa aagggattgt tacaacagca acaggaatac
4351 atcgcctggt gcaataatga aattgccaga ttaaaggaag aagttgcttt
4401 ttacaagcag cttgcccagg agagagagtt gcaattacag ttagaacagt
4451 ctagaaagga gttagcagga gcagactctc gcaggcgaaa agacaaaggg
4501 gtagtaattg atgaagggtc atgctacttc aatccagagg aaacaaccag
4551 aatagttgct catggagata cacaggttac caaaactaga cctgtgaaaa
4601 atatgttata taacatggat gtgcgaatag agattccagg catcccagct
4651 tttacagtaa aggcgattct tgacacagga gcaacaacct gctgcattga
4701 cagcagaagt gtgccaaaag atgcccttga agagaattcg tttgtggtga
4751 atttctcagg catcaactca aaacagcaag ttaagcagaa gattaagccg
4801 ggaaaaatgt tcatcagtga gcattacttc cgaattccat attgctacag
4851 cttcgagatg caaattggtg atggcatcca actcattctt gggtgcaact
4901 ttatacggag catgtatggt ggtgtacgac tagaaggtaa taccataacc
4951 ttctacaagc agatcacaag tatcaacacc agacttgctg cacctctcct
5001 ccagcaggaa gaagaagaga aagaagagga gcttaacctg gaagaacaca
5051 ggttaattca ggaaatggtt gcatactcta ctgagcggcc atttgttcat
5101 ttccaacaaa agtttgcagg gcttattcag gagttgaaag cccagggtta
5151 cattggggaa gagcctatga aatattgggc caaaaatcaa gttgtttgcc
5201 atctggacat caaaaatcca gatatggtaa ttgaagatcg cccactgaag
5251 catgtgacac cccaaatgga aggaagcttt cgcaagcatg tggaagcact
5301 gttaaaaatt ggtgcgatcc gacccagtaa aagtcgacac aggacaacag
5351 ccattatagt caactctgga accagtattg atcctctcac aggcaaagaa
5401 gtcaaaggca aagagaggat ggtctttaac tataaaaggt taaatgacct
5451 cacaaacaaa gatcaataca gccttccggg catccaaacg atcctgcaaa
5501 ggttaaaggg gagtactata ttctccaaat ttgaccttaa aagtggcttt
5551 caccaggtag caatgcatcc agattcaatt gaatggacag ctttttgggt
5601 gcctagcggt ctctatgaat ggttagtcat gccattcggg ttaaagaatg
5651 ctccagcagt ttttcagaga aaaatggatc actgcttcaa agggacagag
5701 gcctttatcg ctgtttatat tgatgacatc ctggtgttct caaagactga
5751 aagggaacat gaagagcatt tacagattat gctctcgatc tgccaaaaga
5801 atgggcttat cttgagccca acaaagatga aaattgccca agctgaaatt
5851 gaattcctcg gggcaatcat tcacaaaggg cttattaaat tacagcccca
5901 tattgtccaa aagttgctaa ctttcaccaa caagcaactc gaggaagtga
5951 aagggctcag atcatggttg ggcctactaa taaactatgc aaggagttac
6001 attcctcaca tgggccgttt actcagccca ttgtatgcca aagtcagccc
6051 aactggtgaa cggagaatga ataggcaaga ttgggccttg atcgacaaaa
6101 taagagccca agtccagaac cttccagccc tggaattacc acctgcggac
6151 tgtttcatca tcatcgaaac agatggatgc atggatggtt ggggaggtgt
6201 ctgcaaatgg aagctagcac aatatgactc taggagttca gaaaaggttt
6251 gtgcttatgc aagtgggaag ttcaacccac caaagtcaac aatcgatgcg
6301 gagatacgtg cagtgatgaa cagcctcaac aatttcaaaa tctattacct
6351 agacaaatcc agcttatgtt taaggactga ctgtcaagct attattagct
6401 tctttaataa gtccaatgtt aacaaaccat ctagggttag atggattgct
6451 ttcacagatt tccttactgg tctaggaatc cctgtaaata tagagcacat
6501 agatgggaag aataaccatc tggctgatgc tctgtccagg ttagtaactg
6551 gttttgtttt tgcagaacca caatgtcaag acaagttcca ggacgattta
6601 gggaagttgg aagcagctct tctggagaag aaagaggctc cgcaagcaat
6651 gcacgaagaa tatgtctccc tgttgaccag atcagcggac cgcattaccc
6701 tctcgctcta ctctatgagg gactcgtctc ccagcagaat ctactcatgc
6751 aggtcaggca aagaaccaat gaaggcctta atttgcgaac agaagtcatg
6801 cctatccaaa ggcgacttgg ggagtatgaa gactgtgcac tccaggagtg
6851 catccaatca gcaaggcaac tggtggccct ccaccagcat aaactcagtt
6901 acatcagagg caaagcgaca agagacaacg catatgccga taaactgccc
6951 acatgcaata gggaccacga acagctgtgt gaagtggtcg agctgttaga
7001 gggaatctca gaaaggatca gtgatacagc tgtctaggat agctggcttc
7051 aattatggag catgatggac ccccccgcaa taatccaaag tgtggagtgc
7101 ttttattgta taattttatg cttttgcttt tgtaagtgcg ctgtagtgcg
7151 cctgtcttta tgctttctta tcctttaagc atcttttgct ttttgcgtgg
7201 catcctttag ttcacaattt aaagaatgac gatggggccc aagatgtgca
7251 cccggttctc taaattgcct atataaggat atgccatagc cttgtttttg
7301 caagtcagga atacctgagc ataacttggc taagcaaaag aattgtaagt
7351 tttctttcta agctttttgt ttgtaagctt ttcagttctt aataaatctc
7401 tcgttaatcg ttgtgaacac atcttgtctt ttgagtagtt gtttttgtat
7451 ttgctatttg ctatttcctg gaa