Sequence of DPV Lamium leaf distortion virus
Lamium leaf distortion associated virus, complete genome.
ACC No: EU554423
Dated: 2008-05-29 | Length: 7713 | CRC: -477598466
ID EU554423; SV 1; circular; genomic DNA; STD; VRL; 7713 BP.
XX
AC EU554423;
XX
DT 09-APR-2008 (Rel. 95, Created)
DT 29-MAY-2008 (Rel. 95, Last updated, Version 2)
XX
DE Lamium leaf distortion associated virus, complete genome.
XX
KW .
XX
OS Lamium leaf distortion associated virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Caulimovirus;
OC unclassified Caulimovirus.
XX
RN [1]
RP 1-7713
RX PUBMED; 18458813.
RA Zhang L., Lockhart B., Dahal G., Olszewski N.;
RT "Studies on biology and genomic characterization of a caulimo-like virus
RT associated with a leaf distortion disease of Lamium maculatum";
RL Arch. Virol. 153(6):1181-1184(2008).
XX
RN [2]
RP 1-7713
RA Zhang L., Lockhart B.E., Dahal G., Olszewski N.E.;
RT ;
RL Submitted (08-MAR-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St.
RL Paul, MN 55108, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7713
FT /organism="Lamium leaf distortion associated virus"
FT /specific_host="Lamium maculatum"
FT /mol_type="genomic DNA"
FT /country="USA"
FT /db_xref="taxon:515320"
FT CDS 36. .1007
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ACB69763.1"
FT /translation="MNKERSSDLSEKEENVFSFSTENSTGFSAELIISNKQLEERISKA
FT TLDLKIESVFNLQPSLVQAMRNAFRRKNTIMYCVSTKEISIDISEAIGNVYLPLITNEE
FT IQSKLQKMKPKERNTISTLHIGAIKILLKAQFRNGINTPVKMALLDNRINNREEALLGA
FT AKGNLAYGKFMFTAYPKFGVNIFTKNLNQVLSLIHEFSYKDFMNKGDKIMSVTYLVGYA
FT LSNSHHSIDYQSSKTIELEDVFQEIGNVNQSSFCTLENDDCEWAIDIAKNKEPLGKPKR
FT TLVKNNLLSVGSSSSSKNSSSELAMLVENVNHLKDAIQKITD"
FT CDS 1013. .1519
FT /codon_start=1
FT /product="aphid transmission factor"
FT /protein_id="ACB69764.1"
FT /translation="MSITSKSHIYKKGTTIIPLKNLAINTDGKKYVFNSLKPNIQSVVN
FT HCNNLNEVCGRILLGIWKLCSYFGLSKDPSEPHSKNPSVYDHAKTIFKSGGVDHSVILR
FT EIKSLIETQQTKNKNLENKIDNLEKSIKDLSHKIEPEPLTHEKIKDFSNALKAIDDKLK
FT NVIGE"
FT CDS 1516. .1884
FT /codon_start=1
FT /product="virion-associated protein"
FT /protein_id="ACB69765.1"
FT /translation="MTTTNLKEIHDLIIQVLEEIKSLKKDINDYSKDSNNEAIAAKIIT
FT DIAEQIKKCPCNKEILDVLKNSKDKQVIPHQGKPDTSSDKPSSLQKYSYPNFRVGNEEL
FT GESKNPDSLRWPEGFQKK"
FT CDS 1881. .3410
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACB69766.1"
FT /translation="MSFYELIDKQFWETLETQSELDERLNTLSRLVNQGEQATNEELQG
FT NETLRSFLNLDNICERFETLNVIEESSEDSSIDNNDPVDYSDSSSEEEEQNTNKRFFME
FT KGEGSQNKKDKDPKVEYPNVENLQSEDNRRTPFNNNKRKSPEQARYPVKPKFEVVSRTL
FT GFLDIDCQDHEVRKKNIDAWASELSLIVQTNPDAYDNADAVILLAEHKALGNAKELIKG
FT TYWNKDNPPMYMLNQIFDSLYSMFLGLDYTDAISKLLETNKQKENARIRLANLKLCNIC
FT SIDEFNCAYEEEFFKLNQNEYPKYISDYLLKIPVVGLAAKEKFDKTTGTLAYSIGHAEK
FT LVREEITKICELSQQQKKLKKISKKCCNKIANKSTDIGCYTTKSYKKKKKKKFKKYVFS
FT KRKRKKFRPGKYFQKKKFPTSGEGKKPCPKGKTNCRCWICNVEGHYANKCPNKQKYGEK
FT VKILRKADLQDLEPIEDIFEESLDVYIAEIIEFDPDLSYQESSDESSEESD"
FT CDS 3325. .5415
FT /codon_start=1
FT /product="replicase"
FT /protein_id="ACB69767.1"
FT /translation="MSTSQRSLSSTQIYPIRKALMNRVKNLINNQIYSGDVTNITNPHS
FT IYIKGRLKFPGYKIMNLDCFVDTGASICLCSKYVIPEEHWKDAERSIKVKIADDSVIEI
FT NKVCENLNMYIAGECFHIPRVFMQESGIDFILGNNFCQNYEPLKQYTDRIILTLENREI
FT IIGKIRRAHRVGVPGFLESLKKKSKLTMQKGTNIAPSKTSFDKRGELGYTLGLKKLFEE
FT DLKKKSIIEKLLDQVCSENPLDPLKTKKWMKASIKLIDPKTVVKVKPMRYNPQDVEEFA
FT KQIKELLELKIIIPSKSPHQSPAFLVENEAERRRGKKRMVVNYKAINTATIGDAHNLPN
FT KDELLTLIRGKSIFSSFDCKSGFWQVLLDEDSQLLTAFTCPQGHYQWIVVPFGLKQAPS
FT IFQRHMNNAFRDFASYCCVYVDDILVFSNNIKDHYAHVAQVLRKCAELGIILSKKKAQL
FT FKCRINFLGLDIDEGTHRPQNHILEHIHKFPNKIEDKKQLQRFLGILTYASDYIPQLAS
FT MRAPLQEKLKEDVPWNWKHSDTEYVEEIKKSLTDFPKLHHPATDEKLIIECDASGKYWG
FT GILKAIHQSEERICRYTSGSFKKAELNYHSNEKEILAVIRVIAKFTIYLTPLEFLIRTD
FT NKNFTFFMNTNVKGDYKQGRLVRWQQWLSRYSFKVEHITGVKNIFADFLTREFQSKNSI
FT EL"
FT CDS 5549. .7102
FT /codon_start=1
FT /product="inclusion body/transactivation factor"
FT /protein_id="ACB69768.1"
FT /translation="MENLAEIYSQLEQAEKIQRTMFQQLSQNATTIFDKARVGIPYDPV
FT SDPETASLLRDIRLISQKIDDLTLLRTAVEKVNSEPCTEKSLQSESSPEQTATGKDTSN
FT PLKDSSFPKAMPEVQTSSKLVKPSDFSLRPNGFMGNPMPKNLVSKLVDSQESVQGIPIP
FT YVFKDYYVVFNGPLPGIYTNWPAAQQATKNVSNVLHKKYKGFIEARTAADLYCKNHGLE
FT PLKFYSEEATLQPKQPKRKVPSGELPSSSLKEADTPDVNIVMEDFMNVYKAARAHKDER
FT FFIDHFFTTEKKNLSFYNFCECSDPEIVKDAYLCGLIKTIYPGPNLLEISLLPKEIRRN
FT VKHFRRKCIKDPSKKIYLKFSSTIPRWGKEGEQVYWPHHHITMGVRSEEEQYQPSRQME
FT ATLEVQDLEELAVQKIQQFIEKMFEFSKEDKTFVNLIWNRVLITSKSFKPLSTSHVELI
FT LLFQKRLKNHYDFGPHHPLICKSIEKKSVEYSCLNCSKGKRPKKDGHVEDSATTSSSSS
FT "
XX
SQ Sequence 7713 BP; 2833 A; 1370 C; 1348 G; 2162 T; 0 other;
eu554423 Length: 7713 29-MAY-2008 Type: N Check: 1760 ..
1 tggtatcaga gccataagta aaagatttta ggatcatgaa taaagaaaga
51 tcttctgatc tatctgaaaa agaagaaaat gtcttctcat tttctactga
101 aaattctaca ggtttttctg cagaattaat tatttctaat aaacaattag
151 aagaaagaat ttctaaagca actttagatt taaaaattga aagtgttttt
201 aacttgcaac cttccttggt acaagctatg cgtaatgctt ttagaagaaa
251 aaatacaatc atgtattgtg tttccacaaa agaaatttct atagatatta
301 gtgaagctat aggaaatgtt tatttgcctt tgattactaa tgaagaaatt
351 caaagcaaat tgcaaaagat gaagccaaaa gagagaaata ctatttctac
401 tcttcacatt ggagccatca agattctgct caaagcgcag ttcagaaacg
451 gaatcaacac accagtcaaa atggcattgc ttgacaaccg tatcaataac
501 cgagaagagg ctcttctagg tgcagctaaa ggtaatttag cttatggtaa
551 atttatgttt accgcttatc caaaatttgg tgttaatatt tttacaaaga
601 atttaaacca agttttaagt cttatccatg aattctctta taaagatttt
651 atgaataaag gagataaaat catgtctgtt acttatttag taggatatgc
701 gttatcaaat agtcatcact cgattgacta tcaatctagc aaaaccatag
751 agctagaaga tgtttttcaa gaaattggaa atgtaaatca atctagtttt
801 tgcactcttg aaaacgatga ttgtgaatgg gctatagata tagctaaaaa
851 caaagaacct ttaggaaagc ctaaaagaac tttagttaag aataatctgc
901 ttagtgtagg ttcttctagc agtagcaaaa attcgtcctc cgaattagct
951 atgcttgttg agaatgtcaa tcatttaaaa gatgccattc aaaaaattac
1001 tgattaagta agatgtctat cactagtaaa tcacatattt acaagaaagg
1051 cacaactatc atcccgttaa aaaatctagc gattaatacg gatggaaaga
1101 aatacgtttt taattcctta aaaccgaata tacaaagcgt agtcaaccac
1151 tgcaacaact taaatgaagt ttgcggtaga attctcttag gaatttggaa
1201 attatgttct tactttggac tctccaaaga tccatcagaa ccacattcca
1251 aaaacccttc ggtttacgat catgccaaaa ccatttttaa gagtggggga
1301 gttgatcata gtgtcattct tagagaaatt aaatctctaa ttgaaacaca
1351 acaaaccaaa aacaaaaatt tggaaaataa aattgacaac ttagaaaagt
1401 caatcaaaga tcttagccat aagatagaac cagaaccctt aacccatgaa
1451 aagattaagg atttctctaa tgctttaaaa gccatagacg ataagttgaa
1501 aaatgtcata ggagaatgac aacaaccaat ctcaaagaaa ttcacgatct
1551 gatcattcag gttcttgaag aaataaaatc cctaaaaaag gatatcaatg
1601 attactcaaa ggattcaaac aatgaagcca ttgcagcgaa aatcattacc
1651 gatattgcag aacaaattaa aaaatgtccc tgtaataaag aaatcttaga
1701 cgtcttaaaa aactctaaag ataaacaggt tatccctcat caaggaaaac
1751 cagataccag ttctgataaa ccttccagtt tacagaaata ttcttatccc
1801 aattttcgtg tcggaaacga agaattagga gaaagcaaaa atccagatag
1851 cctcaggtgg cctgaaggat ttcaaaagaa atgagttttt acgaacttat
1901 tgataaacag ttttgggaaa ctctcgaaac tcaaagtgag cttgacgaaa
1951 ggcttaacac tttaagtcga cttgtcaatc aaggtgagca agcaaccaac
2001 gaagaattac aaggtaacga aactcttaga agctttctaa atcttgataa
2051 tatctgtgaa aggttcgaaa ccttaaatgt tatagaagag tcctcagaag
2101 attcatctat tgataacaat gacccagttg attattctga tagttcatct
2151 gaagaagaag aacagaatac caacaaacga ttcttcatgg aaaaaggaga
2201 aggatcacaa aacaaaaagg ataaagaccc aaaagttgaa tatccaaatg
2251 ttgaaaatct tcaaagcgaa gataacagaa gaactccttt taacaacaac
2301 aaaaggaagt ctccagaaca agccaggtac cccgtcaaac ctaaatttga
2351 ggttgtatct agaactttag gatttcttga tattgattgt caggatcacg
2401 aagttagaaa aaagaacatt gacgcttggg cctctgagct tagtttaatt
2451 gttcagacaa atccagatgc atatgataat gcagatgcag taattctctt
2501 agcagaacat aaagccttag gcaacgctaa agaattaatc aaaggtactt
2551 attggaacaa ggataatcct ccaatgtaca tgttaaatca aatctttgat
2601 tcattatact ctatgttctt aggactagat tatactgatg ctatttctaa
2651 acttttagaa acaaataagc aaaaagaaaa tgctagaata agattagcca
2701 atcttaaact ttgcaatata tgtagcattg atgaattcaa ctgtgcatat
2751 gaagaagaat tctttaagct aaatcaaaat gaatatccga aatacatttc
2801 tgattatctt ttgaaaatcc cagttgtagg attagcagct aaagaaaagt
2851 ttgacaaaac tacaggcaca cttgcttata gtattggtca tgctgaaaaa
2901 cttgttagag aagaaattac aaaaatttgt gagctatctc aacaacagaa
2951 aaagctaaag aaaattagca aaaaatgttg caataaaatt gcaaataaat
3001 ctactgacat aggttgttat acgacaaaat cgtataaaaa gaagaaaaag
3051 aaaaaattca agaaatatgt tttttctaaa agaaaaagaa agaaattccg
3101 tccaggaaaa tactttcaga agaagaaatt tccaacttca ggcgaaggta
3151 agaaaccttg tccaaaagga aaaactaact gcaggtgttg gatctgcaat
3201 gttgaaggtc actatgcaaa caagtgtcct aacaaacaaa aatacggcga
3251 gaaggtaaaa attctcagga aagccgatct tcaagacctc gagcctattg
3301 aagatatttt tgaagaatcc ctcgatgtct acatcgcaga gatcattgag
3351 ttcgacccag atctatccta tcaggaaagc tctgatgaat cgagtgaaga
3401 atctgattaa taaccagatt tattcaggag atgtgactaa catcacaaat
3451 ccacattcaa tttatatcaa aggaagatta aaatttccag gatataaaat
3501 tatgaacttg gactgttttg tagatacagg tgcaagtata tgcttatgct
3551 ccaaatacgt catcccagaa gaacattgga aagacgcaga aagaagcatc
3601 aaggtaaaaa ttgctgatga ctcagtaata gaaatcaaca aggtatgtga
3651 aaaccttaat atgtatattg caggagaatg ttttcatatt ccccgagtat
3701 tcatgcaaga atcaggtatt gattttattc ttggtaataa tttttgtcaa
3751 aattatgaac ctttaaaaca atacacggat agaataattc tcaccttaga
3801 aaatagggag ataattattg gaaaaattag acgcgctcat agagttggcg
3851 taccaggttt tttagaatct cttaaaaaga aatctaaatt aaccatgcaa
3901 aaaggaacca atatcgctcc tagtaaaact tcttttgata agagggggga
3951 gttaggttac actttaggtc ttaaaaaact tttcgaagaa gacttaaaaa
4001 agaaaagcat aattgaaaaa ttgcttgatc aagtttgttc tgaaaatcct
4051 ttagatcctc ttaaaactaa gaaatggatg aaggctagta tcaaactaat
4101 tgatcctaag acagttgtaa aggttaaacc catgagatac aaccctcagg
4151 atgtagaaga atttgctaag caaattaagg aattacttga attaaaaatc
4201 attattccta gcaaaagtcc tcaccagtct ccagcctttc tcgtagaaaa
4251 tgaagcagaa agaagacgtg gtaagaaaag gatggtcgtt aactataaag
4301 ctattaacac agctacaata ggtgacgcac acaatcttcc taacaaggat
4351 gagcttttaa ctctaattag aggcaaaagt atatttagca gctttgattg
4401 taaatcaggt ttctggcagg tactgctcga cgaagattca cagctattaa
4451 ctgctttcac ttgtcctcaa ggacattatc aatggattgt tgtacccttc
4501 gggttaaaac aagctccatc tatctttcaa agacacatga acaatgcgtt
4551 cagagacttt gcaagttatt gttgtgttta cgtagatgat attctcgtat
4601 tctctaacaa catcaaagat cactatgctc atgtagcaca ggtgctcaga
4651 aaatgtgcag aattagggat catactctct aaaaagaaag cacaactatt
4701 caagtgcaga attaactttc ttggccttga tattgacgaa gggactcacc
4751 gtcctcagaa tcatattctc gaacatattc ataagttccc aaataaaatt
4801 gaagacaaaa aacagcttca aagatttctt ggtattttaa cttatgccag
4851 tgattatatt cctcaattag catctatgcg tgctcctttg caggaaaagc
4901 tcaaagaaga tgttccatgg aattggaagc attctgacac tgagtatgtt
4951 gaagaaatca agaaaagtct cacagacttt cctaagctac atcatccagc
5001 aactgatgaa aagcttatta tcgaatgtga tgcatccggt aaatattggg
5051 gtggtattct taaagcaata caccaatctg aagaacgtat ctgcaggtat
5101 acctcaggta gttttaaaaa ggcagaatta aattatcatt ctaatgaaaa
5151 agaaattctt gcagttatca gagttatcgc taagttcact atttatctaa
5201 ctcctcttga gtttctgata agaacagata acaagaactt tacctttttt
5251 atgaacacca atgtgaaagg tgattataaa cagggaagac ttgtcaggtg
5301 gcaacaatgg ctatccagat acagtttcaa ggttgagcac attacaggtg
5351 taaagaacat ttttgctgat ttcctcacca gagaatttca aagcaaaaat
5401 tcaattgagt tatgagatct gattcaaatc cgatttcctc tctataaaaa
5451 gcccgagagc ttaatagaaa aaactcactc ccaactttca aattgccttc
5501 tctacaagga tccttttgaa agaacccttc ctcttatttc attctgaaat
5551 ggagaatctc gcagaaatct acagccagtt agaacaggca gaaaagattc
5601 agagaacaat gttccaacag ctttcacaaa atgctacaac catttttgat
5651 aaagccagag taggaatccc ctacgatcca gtctcagacc cagagacagc
5701 cagtctcctt agagacatca gattgatctc ccaaaagatc gatgatctga
5751 cactactgcg cacagcggta gaaaaggtta attctgaacc ttgcactgag
5801 aaatcactgc aatcagaatc tagtccagag caaacggcta ctggtaaaga
5851 cacatcaaat ccgttaaagg atagtagctt tccaaaagct atgcctgagg
5901 tacagacctc atcaaagttg gttaagcctt cagacttcag tcttaggccc
5951 aacggtttca tgggtaatcc aatgcccaaa aatctagtgt caaaactagt
6001 tgattcgcaa gaatcagtac agggaattcc aatcccctac gtttttaagg
6051 attattatgt tgtttttaat ggtcctcttc caggtatcta taccaattgg
6101 cctgcagcac agcaagctac gaagaatgtt tcgaatgttc tacacaagaa
6151 atacaaaggc ttcatagaag caagaacggc ggcagattta tactgcaaaa
6201 atcatgggtt agaacctctc aagttctatt ctgaagaagc tactcttcaa
6251 cccaagcagc ctaaaagaaa agttccatcc ggcgaactac ccagctcttc
6301 tctcaaagaa gctgatacac cagatgtaaa cattgtcatg gaagacttca
6351 tgaatgtcta caaggctgca agagctcata aagatgaacg attcttcatc
6401 gaccacttct tcaccaccga gaagaaaaat ctaagctttt acaatttctg
6451 tgaatgttca gatcctgaga tcgtaaaaga tgcctatctt tgtggattga
6501 tcaaaacaat ctacccaggt cctaatctct tggagatttc tctccttcct
6551 aaagagataa gaagaaatgt caagcatttc agacgaaagt gcattaaaga
6601 tccaagtaag aaaatttact tgaaattctc cagcactatt cccagatggg
6651 gaaaagaagg tgaacaggtt tactggccac atcaccatat aactatgggt
6701 gttcgttccg aagaagaaca ataccagcct tccagacaaa tggaagccac
6751 acttgaggtt caagaccttg aagaactagc tgttcaaaaa attcaacagt
6801 tcatcgaaaa gatgtttgaa ttcagcaagg aagataagac ttttgtcaat
6851 cttatctgga atagggtttt gataacttca aaatctttca aaccactcag
6901 cacaagccat gtggaattga ttcttctttt tcaaaagagg ttaaagaatc
6951 attatgactt tggaccccac catccactca tatgcaaaag catagagaaa
7001 aagtcagtgg aatacagctg cctcaactgt agcaaaggca aaaggccaaa
7051 gaaagacgga cacgtagaag attctgcgac aacgtcgtca tcatccagct
7101 aatgtagtta gtggttgatt cgtcagcaat gacgtaaaac atttgtatcg
7151 atcctcactc cttatctata aaaggatgag ttatttttct tggaaggaca
7201 tctcgaaact agcagtcctc tcctttcaaa aaatttatct ttttaagttt
7251 ttagtcatga agtgtgagta gtccccatag agggaagtag tagaaggaat
7301 acctttgggt ttccataggc attcttccat atgtatttaa taatatgttt
7351 ctgaaataaa agaagtgttt atcaaaatac gttgttcaat cattgatcta
7401 tatctcttgc aaatcctgga gctcgttgtg tccgattagt accgctaggc
7451 aggaggccgt tagggaagct ggacagtaga gttggaacgc ggtggagaaa
7501 aagatctcga tacgaacatt gaaggtattt tcgatttcat tagctcttat
7551 attcacagta ttattgatga aggaagaccc tgctctggaa atacaggtat
7601 cccatatact actatcctct tgttcaaaaa ttttgataaa aattttacaa
7651 aaatataaac gtatgctttc agtatacact tttccgcagg tttttagtaa
7701 ccaacccgca att