Sequence of DPV Tomato severe rugose virus

Tomato severe rugose virus replication initiation protein (Rep) gene, partial cds; AC4 protein (AC4) gene, complete cds; and coat protein (CP) gene, partial cds.

ACC No: EU600238

Dated: 2008-04-22 | Length: 1352 | CRC: 1667277859

                
ID   EU600238; SV 1; linear; genomic DNA; STD; VRL; 1352 BP.
XX
AC   EU600238;
XX
DT   22-APR-2008 (Rel. 95, Created)
DT   22-APR-2008 (Rel. 95, Last updated, Version 1)
XX
DE   Tomato severe rugose virus replication initiation protein (Rep) gene,
DE   partial cds; AC4 protein (AC4) gene, complete cds; and coat protein (CP)
DE   gene, partial cds.
XX
KW   .
XX
OS   Tomato severe rugose virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1352
RA   Sawazaki H.E., Souza-Dias J.A.C., Pernambuco P.C.A., Mendonca E.N.A.;
RT   "Outro begomovirus na regiao metropolitna de Campinas, SP: Tomato severe
RT   rugose virus (ToSRV)";
RL   Summa Phytopathol. 33(Supplement):11-11(2007).
XX
RN   [2]
RP   1-1352
RA   Sawazaki H.E., Souza-Dias J.A.C., Pernambuco P.C.A., Mendonca E.N.A.;
RT   ;
RL   Submitted (31-MAR-2008) to the EMBL/GenBank/DDBJ databases.
RL   Genetic, Instituto Agronomico, Barao de Itapura, 1481, Campinas, SP
RL   13020-902, Brazil
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1352
FT                   /organism="Tomato severe rugose virus"
FT                   /segment="DNA-A"
FT                   /specific_host="Solanum tuberosum"
FT                   /isolate="IAC"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /note="PCR_primers=fwd_name: PAC1v1978, rev_name: PAV1c715"
FT                   /db_xref="taxon:158463"
FT   gene            complement(<1. .690)
FT                   /gene="Rep"
FT   CDS             complement(<1. .690)
FT                   /codon_start=1
FT                   /gene="Rep"
FT                   /product="replication initiation protein"
FT                   /note="REP; AC1; AL1"
FT                   /protein_id="ACC63230.1"
FT                   /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI
FT                   KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY
FT                   VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF
FT                   HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE
FT                   GDSRTGKT"
FT   gene            complement(273. .536)
FT                   /gene="AC4"
FT   CDS             complement(273. .536)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /protein_id="ACC63231.1"
FT                   /translation="MKMGSLISTCFFNLRAITAAKINDSSTWSPQQGQHISIRTFRELS
FT                   HRPTSNPMSTKTEILSSGGNSKSTEEVLEAVARQLTTLPQKP"
FT   rep_origin      691. .996
FT                   /note="common region"
FT   gene            997. .>1352
FT                   /gene="CP"
FT   CDS             997. .>1352
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="AV1; AR1"
FT                   /protein_id="ACC63229.1"
FT                   /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYGLKYNKAAEWVNRPMY
FT                   RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF
FT                   CVKSVYILGKVWMD"
XX
SQ   Sequence 1352 BP; 329 A; 281 C; 331 G; 411 T; 0 other;

eu600238 Length: 1352  22-APR-2008  Type: N  Check: 800  ..

       1  cgtctttccc gttcgagaat caccttcaat gatgatacta ataggtcgtt
      51  ccggccgcgc agcggcacct ctcccaaaat agtcatctgc ccaagcttgc
     101  atctctctcg gtacgctagt gaaagaggag aggggaaacg taggggccca
     151  tggctccgga gcccttgtaa atatcctatc taaattacta tttagattgt
     201  gaaactgaaa taagaacttt tcaggcagct tctcacggat tatctgcaag
     251  gcgacgtctt tggaaggtgc gttcaaggct tctgcggcag cgtcgttagc
     301  tgtctggcaa ccgcctctag cacttcttcc gtcgatttgg aattcccccc
     351  actcgatagt atctccgtct ttgtcgacat aggatttgac gtcggacgat
     401  gacttagctc tctgaatgtt cggatggaaa tgtgttgacc ttgttgggga
     451  gaccaggtcg aagaatcgtt gattttggca gcagtaattg ccctcaaatt
     501  gaagaagcac gtggagatga ggctccccat tttcatggag ctctctgcaa
     551  accttgatga acttcttatt tgtaggagtg tttagggttt ttaattggga
     601  aagtgcttct tctttcgata atgagcattt gggatatgtg aggaaataat
     651  tcttcgcttt tatttgaaag cgctttggag ctgatggcat atttgtaaat
     701  atgaccctta ctaccaattg gtagctgctc taaaactcat atgaattggt
     751  agttatggta gctcttaaat agtagaagtt ccttttaagg agattgccac
     801  acgtggcggc catccgttat aatattaccg gatggccgcg cgatttttca
     851  cccctttagt ttcaattaaa gtaaagtgat tgtctgtggc ccaatcatat
     901  tgggcctgtc gagcttagat atttgtaaca acttaaggcc caagttgtta
     951  aacggctata aattgaacat acactttact tttgttttaa ttcaaaatgc
    1001  ctaagcgtga tgccccatgg cgtttaacgg cgggaacttc aaaggtttcc
    1051  cgctctgtca atttttctcc ccgtgcagga tatggactca aatataacaa
    1101  ggccgctgag tgggtgaaca ggcccatgta caggaagccc aggatctacc
    1151  gtactttgag aggcccagat gttcctagag gctgtgaagg gccttgtaag
    1201  gttcagtctt acgagtctcg tcatgatgtt tcccatgtcg ggaaggtgat
    1251  ttgtgtgtct gacgttacac gtggtaacgg tattactcac cgtgttggta
    1301  agcgtttctg cgtgaagtct gtatatattt tagggaaggt atggatggac
    1351  ga