Sequence of DPV Arabis mosaic virus
Arabis mosaic virus isolate Lv segment RNA2, complete sequence.
ACC No: EU617327
Dated: 2008-07-21 | Length: 3812 | CRC: -1193475059
ID EU617327; SV 1; linear; genomic RNA; STD; VRL; 3812 BP.
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AC EU617327;
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DT 21-JUL-2008 (Rel. 96, Created)
DT 21-JUL-2008 (Rel. 96, Last updated, Version 1)
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DE Arabis mosaic virus isolate Lv segment RNA2, complete sequence.
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KW .
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OS Arabis mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup A.
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RN [1]
RP 1-3812
RA Dupuis L., Cobanov P., Bassler A., Krczal G., Wetzel T.;
RT "Complete genome sequence of a virulent isolate of Arabis mosaic virus from
RT privet (Ligustrum vulgare)";
RL Arch. Virol. 153(8):1611-1613(2008).
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RN [2]
RP 1-3812
RA Dupuis L., Cobanov P., Bassler A., Krczal G., Wetzel T.;
RT ;
RL Submitted (03-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL Alplanta - Institute for Plant Research, Rlp Agroscience, Breitenweg 71,
RL Neustadt An Der Weinstrasse 67435, Germany
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CC GenBank Accession Numbers EU617326-EU617327 represent the complete
CC genome of Arabis mosaic virus isolate Lv.
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FH Key Location/Qualifiers
FH
FT source 1. .3812
FT /organism="Arabis mosaic virus"
FT /segment="RNA2"
FT /specific_host="Ligustrum vulgare"
FT /isolate="Lv"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:12271"
FT CDS 262. .3618
FT /codon_start=1
FT /product="polyprotein 2"
FT /protein_id="ACF32435.1"
FT /translation="MGKFYFSNRRLACYAQATNRHLGGSFEQWLQCMEDSAFKAEVKAR
FT VQSEREEIRVKRLFSYPVGRGPAEDPRGVNWAYICLGTTAHWAGVPGDMVSIPKPPVAP
FT KVVVPPVKVIPSPPPVPRPHFRPIGAFAPTRSGFIRATVERLTREREESRAAALFTELP
FT LEYPQGAPLVVPCGFAAMRWTYHTTWRRWYDASDERALRVHPGGPALPPPPPPPPIQKP
FT PSFEERLQAVLQRQSCARAFALETSLGLNMAWVGTATIPSISVCCADGRTTGGQTIAQE
FT ADPINHRVASNTAPGRAQWISERRSALRRREQANSLQGLAAQTDMTFEQARNAYLGAAD
FT MIEQGLPLLPPLRNAYAPRGLWRGPSTRANYTLDFRLNGIPTGQNTLEILYNPVSDEEM
FT DDYRDRGMSAVVIDALEIAINPFGMPGNPTDLTVVATYGHERNMERAFIGSSSTFLGNG
FT LARAIFFPGLQYSQEEPRRESIIRLYVASTNATVDADSILAAISVGTLRQHIGSLHNRT
FT VASSVHAAQVQGTTLRATMMGNAVVVSPEGSLVTGTPEANVQIGGVSSMRMVGPLAWEN
FT VDEPGQTFTIRNRSRPMRVNRNADVGVALPRMSTTTRGLAGRGSVQVPKDCQAGKYLKT
FT LDLRDMVSGFSGIQYEKWITAGLVMPDFKVVIRYPANAFTGITWVMSFDAYNRITSSIS
FT TTASPAYTLSVPHWLLHHKNGTTSCDIDYGELCGHAMWFSATTFESPKLHFTCLTGNNK
FT ELAADWEFVVELYAEFEAAKTFLGRPNFIYSADAFNGSFKFLTIPPLEYDLSTTSAYKS
FT VSLLLGQTLVDGTHKVYNYNNTLLSYYLGIGGVVKGKVHICSPCTYGIVLRVVSEWNGV
FT TNNWNQLFKYPGCYIDEDGNFEIEIRSPYHRTPLRLLDAQAASSFTSTLNFYAISGPIA
FT PSGETAKMPVVVQINEIALPDLSVPSFPNDYFLWVDFSAFTVDTEEYVIGSRFFDISST
FT TSTVALGDNPFAHMIACHGLHHGILDLKLMWDLEGEFGKSSGGVTITHLCGDKATGMDG
FT ASRVCALQNMGCETELYVGNFAGANPNTALNLYSRWLAIKLDKAKSMKMLRVLCKPRGN
FT FEFYGRTCFKV"
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SQ Sequence 3812 BP; 891 A; 843 C; 949 G; 1129 T; 0 other;
eu617327 Length: 3812 21-JUL-2008 Type: N Check: 6570 ..
1 atgaaaaatt tctgtgagtt ctcatataaa cgtgaattta catcttttca
51 aaccaggagt ttaagaaact caaaattgtt ctttgccaat ccgttaagag
101 cggaaacaaa gccaaaccgt taagagcggt accaaagcga agagtttaag
151 aaactcatca ttgccttctt tttctttctt acttacgtgt tttatttatt
201 tagcgtttgt tttgtttgtt ttataggagg agcgttttgt ttctctttct
251 tttctgccct tatgggcaaa ttttatttta gtaacaggcg tcttgcctgt
301 tacgcacagg ctacgaaccg ccacctgggt ggttcttttg aacaatggct
351 ccagtgcatg gaggactcag cctttaaggc tgaggttaaa gcccgcgtcc
401 aatcggagcg agaggaaatc cgtgttaagc ggcttttttc ctatccagtt
451 ggcagagggc ctgctgagga cccccgtggg gtcaactggg catacatatg
501 cctggggact actgcccatt gggctggtgt tcccggggat atggtgtcta
551 ttcccaagcc tcctgtggct cccaaggtgg tggtgccacc tgtgaaggtt
601 attccttcac cgccccctgt gccaaggcct cattttaggc caattggggc
651 gtttgcacca acccggtccg ggtttatacg ggccactgtg gaaaggctca
701 cccgggaacg ggaagagtca agagctgcgg cactctttac cgaattgcca
751 ttggagtacc ctcaaggtgc tcccttggtg gtcccttgtg gctttgctgc
801 catgagatgg acttatcata ccacctggag gcggtggtat gacgccagtg
851 atgagcgtgc tttacgcgtt catcctggtg gccctgcctt acctccaccc
901 cctccccctc ccccaatcca aaaaccaccc tcttttgagg agaggttgca
951 ggctgtcctc caaaggcagt cctgtgctag ggcttttgcc ctggaaacct
1001 cgctgggcct taatatggcc tgggtgggca cggctaccat ccccagcatt
1051 tctgtgtgct gtgctgatgg taggactact ggtgggcaaa cgattgccca
1101 ggaagctgat cctattaacc atagggttgc ttctaacaca gcccccggta
1151 gggcacaatg gatctcggag cgccgcagtg ctctgagacg gagggaacag
1201 gctaacagcc tgcagggtct tgctgctcag actgacatga catttgagca
1251 ggccaggaat gcgtatcttg gtgctgctga tatgatagag caaggcctac
1301 cgttactacc tcccttgagg aatgcttatg cacctcgtgg tctatggagg
1351 ggaccttcca ccagagccaa ttatactctt gatttcaggc ttaacggaat
1401 ccccaccgga caaaatactt tagaaatatt gtataatccg gtgtcggacg
1451 aggaaatgga tgactaccgt gacaggggta tgtcagcagt cgtgattgat
1501 gcgctggaaa ttgctatcaa tccttttgga atgccaggca atccgactga
1551 tcttactgtt gtagcaacgt atgggcacga acgtaacatg gaacgtgcct
1601 ttattggttc ttcgtctacc tttcttggaa atggtttggc gagagctatc
1651 ttctttcctg gtttacaata tagccaggaa gaacctaggc gcgaatctat
1701 tattcgcctg tatgttgctt ctaccaacgc cactgttgat gctgattcta
1751 ttcttgcggc cattagtgtg ggcactctac gccaacacat tggttcgcta
1801 cacaacagaa cagtggcgag ttctgtacac gctgctcaag tgcagggcac
1851 aaccttgaga gctactatga tgggtaatgc tgttgtagtt tctcccgagg
1901 gaagtctcgt tactggaacc cctgaagcta atgtccaaat cggaggagtt
1951 tcgagtatgc gtatggttgg tcccctggca tgggaaaatg ttgatgaacc
2001 agggcagacc tttactataa gaaaccgctc ccggcctatg cgagtaaacc
2051 ggaatgctga tgttggagtt gctcttccta gaatgagtac tacaacgcgg
2101 ggtcttgctg gtagaggttc tgtccaggta cctaaggatt gccaggcggg
2151 aaaatacttg aaaacccttg acctaagaga catggtcagt gggttttcgg
2201 gtatacagta tgagaagtgg atcactgctg gacttgttat gcctgatttt
2251 aaagtggtga ttcgctatcc agccaatgcc tttacaggta ttacgtgggt
2301 tatgagcttt gatgcctata accggattac tagcagcatt tctactactg
2351 ctagtcctgc gtatactctg tcggtccctc attggctgct gcatcataag
2401 aatgggacga cctcatgtga tattgattat ggggaacttt gtggtcacgc
2451 catgtggttt agtgccacta cttttgaaag ccccaaactt catttcacat
2501 gcctcactgg aaataacaag gagcttgctg cagattggga gtttgtagtt
2551 gagctatatg ccgagtttga ggcggcaaaa acttttcttg gaaggcccaa
2601 cttcatttat agcgctgatg cttttaatgg atctttcaag tttctgacaa
2651 tcccaccact ggaatatgac ctgagtacta ccagtgccta caagagtgtg
2701 tccctgttat tgggccagac tcttgttgat gggactcaca aggtgtataa
2751 ttataataat actcttctga gttattatct tggcattggt ggcgtggtca
2801 agggcaaagt gcatatatgt agcccttgta cttatggcat agtcctaaga
2851 gttgttagtg aatggaacgg ggtcactaac aactggaatc aacttttcaa
2901 ataccccggg tgttacatcg atgaggatgg gaattttgaa attgaaattc
2951 gttccccata tcatcgaact ccactgcgct tattggatgc acaggcagcg
3001 agctctttta cgagtacgct gaatttctat gcaatctcag ggccaattgc
3051 cccaagtgga gaaactgcta agatgccagt ggtcgtgcaa atcaatgaaa
3101 ttgcgcttcc tgatctttca gtcccatcct tccctaatga ttatttccta
3151 tgggttgact tttcagcgtt caccgtggac actgaggagt atgtgatagg
3201 gtcgaggttt tttgatattt cctcaactac tagcactgta gcccttggag
3251 ataatccttt tgcccacatg atagcttgtc atggattaca tcatggaatc
3301 cttgatctta agttaatgtg ggatttggag ggtgagtttg gtaagagctc
3351 tggtggtgtt actatcacac atttgtgtgg tgataaagcc actggcatgg
3401 atggagcttc ccgtgtgtgt gctctacaaa acatgggttg tgaaactgag
3451 ctgtatgtag ggaatttcgc tggtgctaat cctaacactg cgttaaacct
3501 gtacagccga tggcttgcta tcaagctgga taaggctaag agtatgaaaa
3551 tgctccgagt tttgtgcaag ccaagaggga actttgaatt ctatggtaga
3601 acatgtttta aggtttaatt ccctccaata gtcttgggaa tctgactata
3651 aaagacccac ttgtgttatt tttatattta gcttgtttac tgcttttgtg
3701 tgtttaattt catgcattta gtggcgacag tgtgttgttt gtcctttgga
3751 cgcacttgcc ttgttggacg caaaaagatt ttacttttct ttttactgct
3801 tttgtaaatt ac