Sequence of DPV Parana virus
Parana virus strain 12056 segment L, complete sequence.
ACC No: EU627613
Dated: 2008-08-15 | Length: 7088 | CRC: -1118323975
ID EU627613; SV 1; linear; genomic RNA; STD; VRL; 7088 BP.
XX
AC EU627613;
XX
DT 03-MAY-2008 (Rel. 95, Created)
DT 15-AUG-2008 (Rel. 96, Last updated, Version 2)
XX
DE Parana virus strain 12056 segment L, complete sequence.
XX
KW .
XX
OS Parana virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC New world arenaviruses.
XX
RN [1]
RP 1-7088
RX PUBMED; 18602020.
RA Charrel R.N., de Lamballerie X., Emonet S.;
RT "Phylogeny of the genus Arenavirus";
RL Curr. Opin. Microbiol. 11(4):362-368(2008).
XX
RN [2]
RP 1-7088
RA Emonet S.F., de Lamballerie X.N., Charrel R.N.;
RT ;
RL Submitted (09-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL MIND, The Scripps Research Institute, 10550 North Torrey Pines Road, La
RL Jolla, CA 92037, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7088
FT /organism="Parana virus"
FT /segment="L"
FT /strain="12056"
FT /mol_type="genomic RNA"
FT /country="Paraguay"
FT /db_xref="taxon:45222"
FT CDS 92. .379
FT /codon_start=1
FT /product="Z protein"
FT /db_xref="UniProtKB/TrEMBL:B2MW50"
FT /protein_id="ACC94301.1"
FT /translation="MGLRYSKAVKDKYGDREIEGRATMTLNLPQGLYGRFNCKRCWFAT
FT KGLIACSDHYLCLNCLTIMLSDGNFCEVCGKTLPKKIVFEESPSAPPYDG"
FT CDS complement(451. .7059)
FT /codon_start=1
FT /product="L protein"
FT /note="polymerase"
FT /db_xref="UniProtKB/TrEMBL:B2MW51"
FT /protein_id="ACC94302.1"
FT /translation="MTEIISELKDLIRKWVPDEEHYIEQKSLTLSQVHTRAVVIEGLKL
FT LSLIVEVDSCLKHKCIPNRNKTVNMILKDHKLVGPTLPECTPDGYYLCGDVLILLEVFV
FT RSNQSAFEKKYAADFEKLMSLAKDLTSYGITLVPVIDGRSNYYVEAIPDWVIERLRWLL
FT LKVMDSLKDEGEDIEETEYSRLIHSLSTMENQNLGLESISQLKQTGLTYKKKLQALFTK
FT NIRPNMSLGECRLKLIEIFNEFRLRLESGTVERAYTQTNQDFLLNKLKEHSLLKVSRVS
FT KFDSKGDCHLCSNHLIKVLGLLKRQTTDEKEAPRIGMIRREYGLILSTCNKIKGQKILN
FT TRRNTLLSLDVVMFNAFLSLLRTYGEIVFDLMVGGCLQSVNDRLVSPSLIIDLYNKKCT
FT RNPQWLSKVMLKLNLLPGYIQEDFKVFVRPHLVELDLDLWSNYLELYSTTFERRLEIQY
FT TVSEEEVHEKTDPEVIEWLEMKESTFKQYLDSLSTLSLGLVNSMKTSGTSRFHINQPND
FT YYGTVKCEECFFQSLHHAYGVSLLYQKTGERNRCYSLCSNSGKVGHIVSFYCDPKRFFL
FT PIMSQQVLLSMTQEMLSWLDFIKGDDLNLISSMLRRLILSVLACPSKRVQLYLQGLRYF
FT LMAYVNEIHHVQLLAKLEVEVKSRSEWATMTLADDLVVALLNMSNQPNMSKTFKFLLNV
FT SYLCHLITKETPDRLTDQIKCFEKFMEPKIDFGSVIVNSSLNGNMTEEEESKILLDIDR
FT LLSKQLNTSDQISKPGVNPTVMSLCCSLFNLGELDVNGKLKRDPQSPSFTSTALDMSSN
FT KSVVVPKLDELGNPLSTYDYAAVVSSVIVDLSEGFKNKLRYKLDPHTLKYKIYKRFLSL
FT VSDKTPKENKLEMSQDEFLDEITDEQLEMIEKIEMEVNECLSKAANVEPRIGTGPDDKN
FT PLKSLWAKEILCVIESETSKHEVKDFDYTLFHHETYKELVELVFNSNSRNQYFTDRILN
FT PCPLEYLMKNLCRKYYEEEDYFECFKYILVSTGFDNKVGRYDHKNMCRLGFKQSATRIR
FT EDARISCRESNSESILKRLDKSFFTNSSLRNLCFYSEESPTAFDSVSSDLGRLKFGLSY
FT KEQVGGNRELYVGDLNTKLMTRLIEDYFECLMEKMKYTCLNNEAEFERALLDMKSVVRR
FT SGFTVSMDHSKWGPHMSPVIFSQLFKALQFSLPDGSQIDKEPILNLLSWHIHKVVEVPF
FT NVVHAYTKGYLKRLCGLMDNRTSKTEDFMDKFFADEVIPSHISSVLDMGQGILHNVSDF
FT YGLITEQFISYALQTCVGVLSMAFTSSDDEILLGVTNDLKNQDESLDIDKSLEFLEFHN
FT YLSATLNKFISPKTVAGTFACEFKSRFYIWSQEVPLLTKFTAAALHNVKAKAPNQLCET
FT IDTIQDQCVANGVSVEVVGAISKRTNNIIKYSGHPSNPFLCLNDMDVKDWVDGSRGYRL
FT QRSVENVYNDDEIPEYVRDMAARLFYLIRNGQVQEEYLISSMQSDPDECFTLLAGILGV
FT PEQNISRLLDIRWLNLRAHGDLRMVLRTKLMGSNRVIQREEVPSLIKSVQSKLSKNFVR
FT GARKIITDAVNKSAFQSCIAAGFVGICKSMGSKCVRDGKGGFMYIKDILSKIQYHKNCD
FT VCKVSSGIYCKESLKAVSDFSRPLFWDYFALVLTNACELGNWVFSKPKIPDVVYKLDNP
FT NFFWPVKPASHTELEDKIGMNHVLYSIKRNYPDIFEEHLAPYLTDLNTLKLSWVQKVKF
FT LDICVAIDMVSESLGIISHMIKRKREELYIVKQNEQSMSHTRESQELAGGFRVTNEQIC
FT HNFLLQILFDSMITPVLLTSSQFKKYFWYGEVELLPNDCEHPLGQLTQFIMDCKKLNLS
FT RAMNLDDLDVGFVHSTIKLSDVFLNFSTFLTKVDWENRKDYNNLEELLKSTLESQLVLS
FT IGLTFTHLRRSLKYKYERSTVYTIIAKVILDIEQLTLNEDDQICLIVQEVECYVSQSGG
FT DHISLDGAALIPLTPIISGTETLCLDEVAIRQDDMLKGVSKHLGNVKLDFSSHIKELKN
FT KFSYKIQGPQVGMNPLHIDKGIIMEGDKVVSRLDVNVTAKSLFMALELLTDDELIRKFL
FT RSLFYYLKSVKKGTALISLLSSDLKDIAEVYFNHFKDILKEEADWVSFGSFQLVYSKSL
FT DTIMIGDEKGEFRLKGVNCKRLIPVIPAVQEIE"
XX
SQ Sequence 7088 BP; 2146 A; 1562 C; 1125 G; 2255 T; 0 other;
eu627613 Length: 7088 15-AUG-2008 Type: N Check: 8347 ..
1 cgcaccgagg atcctaggct tattgatctt cgcgcatata ggaaagtcta
51 cacacttgtc tgtgtgaggc ccatccacct atttgaccaa catggggttg
101 aggtactcca aagcagtcaa agacaaatat ggagatcgag aaattgaagg
151 cagagccacc atgacactca atttgccaca aggtctctat ggtaggttca
201 actgcaagcg ttgttggttt gcaacaaaag gattgatagc ctgtagtgac
251 cactatcttt gtctaaactg cctgactata atgttgagtg atggcaactt
301 ttgcgaagta tgcggaaaaa cacttccaaa aaagatagtc tttgaagaga
351 gtccatctgc tccaccctac gatggctaaa gggaggccct cggcgcaccc
401 cccaaagggg ggtgcgccgg gggccccccc ggcctggggc cgggatgcgt
451 tcactcgatt tcctgaactg ctggaatcac tggtatcaac ctcttgcaat
501 taacaccctt caacctgaat tcaccttttt catccccaat catgatagta
551 tccagactct tgctatacac aagctggaat gaaccaaaac tcacccagtc
601 agcttcttcc ttgagtatgt ctttaaagtg gttgaaatat acttctgcaa
651 tgtctttaag gtctgatgac agaaggctga tcaacgctgt tccctttttt
701 actgacttta aataataaaa caaggacctt aaaaatttcc tgataagttc
751 atcatctgtc aacagttcta gagccataaa caaagatttt gctgtgacat
801 tcacatcaag tcttgaaact actttgtcac cctccataat gattccctta
851 tcaatgtgga gggggttcat acccacttgt ggtccctgta ttttgtagga
901 aaatttgttt tttaattctt ttatatggga actaaaatca agtttaacat
951 ttcccaggtg ctttgaaaca ccttttaaca tgtcatcttg cctaatggca
1001 acttcatcca agcacagtgt ttcggtaccc gagataatgg gcgttaatgg
1051 tattaaggca gcaccatcca gagatatatg atctcctcca gattgtgaaa
1101 catagcactc aacctcttgg acaattaagc aaatctgatc atcttcattt
1151 aaggtgagct gctctatatc caatatgacc ttagctatta ttgtataaac
1201 agttgatctt tcatacttgt acttaagact tcgtctaaga tgagtaaaag
1251 tcaacccaat gctcaacact aattggcttt ccagagttga cttcagtagt
1301 tcttcaagat tattgtagtc ttttctattc tcccagtcca cttttgttaa
1351 gaatgttgag aaattcaaaa atacatcaga taatttaatg gttgaatgta
1401 cgaacccaac atcaagatca tctaaattca tagctcgcga taagttcaat
1451 ttcttacaat ccattataaa ttgtgttaac tgtcccagag ggtgttcaca
1501 atcatttggc aataactcaa cttccccata ccaaaagtat tttttaaatt
1551 ggctgcttgt tagaagaaca ggtgtaatca ttgaatcaaa taggatctgc
1601 aatagaaaat tatggcatat ttgttcattc gtcactctaa agcctccggc
1651 aagttcttga gactctctag tgtgagacat agactgctca ttctgtttca
1701 ctatgtataa ttcttccctt ttcctcttga tcatgtggct tataataccc
1751 aagctttcac tgaccatatc tattgccaca cagatatcta agaacttgac
1801 cttttgcacc caagacaact ttagtgtatt taaatctgtc aaataaggtg
1851 ctaaatgttc ctcgaagatg tcggggtagt tcctctttat tgaatatagt
1901 acatgattca taccaatttt gtcctcaagt tcagtatgtg atgcaggctt
1951 tactggccag aagaagttgg gattatccaa tttgtaaacc acatcaggaa
2001 tcttaggttt agaaaatacc cagtttccta attcacatgc attggtcaag
2051 acaagggcaa aatagtccca aaacaaaggc cttgaaaaat cactcacagc
2101 tttaagggat tccttacaat atattccact agacactttg caaacatcac
2151 aattcttatg atactgaatt ttactcaaaa tatccttaat gtacatgaaa
2201 ccacccttac catctcggac acatttagat cccatactct tgcaaattcc
2251 gacgaaccct gctgcaatgc agctctgaaa agcagattta ttcacagcat
2301 ctgttatgat cttccttgcc cctcttacaa agttcttcga taattttgat
2351 tgaacagact taattaagct gggcacttct tctctctgta taaccctatt
2401 agagcccatt aactttgtcc tcaagaccat tctcaaatct ccatgtgccc
2451 ttaaattcag ccatctaatg tcaagcagcc ttgagatatt ctgctccggc
2501 accccaagga tccctgcaag cagtgtgaaa cactcatcag gatctgattg
2551 catagatgat attaaatact cctcctgaac ctgaccattt ctgatcaaat
2601 aaaacaacct tgcagccata tctctgacat actcaggtat ctcatcatca
2651 ttgtatacat tttccacaga tctttggagc ctataccccc ttgacccatc
2701 aacccaatct ttcacatcca tgtcattcag gcacaggaat ggattacttg
2751 ggtgacctga gtacttaatt atgttatttg ttctctttga aattgctcca
2801 acaacttcaa ctgaaacacc attggcaaca cactgatctt gtatggtgtc
2851 aattgtctca cataactgat taggtgcctt tgctttcaca ttatgcaaag
2901 cagctgctgt gaactttgtc aaaagaggca cttcctgtga ccaaatataa
2951 aaccttgatt tgaattcaca tgcaaatgta ccagcaacag tctttggact
3001 aatgaactta ttgagagttg ctgacaagta gttgtgaaat tctaaaaact
3051 ccaatgactt gtcaatgtct aaggattcat cctggttctt taaatcatta
3101 gtaacaccta gcagaatctc atcatcacta gaggtgaatg ccatactaag
3151 aacaccaaca cacgtctgaa gtgcataaga tataaattgt tctgttatca
3201 atccatagaa atcagagaca ttatgcagaa tcccttgtcc catgtctaat
3251 acagaagata tatgagacgg gatcacttca tctgcgaaaa acttgtccat
3301 gaaatcttca gttttactag tcctattatc cattagccca catagccgtt
3351 tcaaataacc ttttgtataa gcatgtacca cattaaaggg aacctcaacc
3401 actttatgta tatgccaact aaggagattc aaaataggtt ctttgtctat
3451 ttgggatcca tctggaaggg aaaactgcaa cgccttaaac aactgtgaaa
3501 agataactgg actcatgtgt ggcccccatt ttgaatggtc cattgaaaca
3551 gtaaaaccag accttctaac aacagacttc atatctaaga gagccctctc
3601 aaactcagct tcattattca gacatgtgta cttcatcttc tccattaggc
3651 attcaaaata atcctcaatc aatcttgtca ttaatttggt gtttaaatcc
3701 cccacatata attccctatt tccaccaact tgttccttat aagacaatcc
3751 aaacttcaac cttcccagat ctgaagaaac actatcaaat gcagttggtg
3801 attcttcaga gtagaaacaa agatttctaa gagatgaatt agtgaaaaag
3851 ctcttgtcca acctctttaa aattgactca gagttgctct ctctacaact
3901 aattctagca tcctctctga ttcttgtagc agattgctta aaacctagtc
3951 tacacatgtt tttatgatca tacctaccca ccttattgtc aaacccagta
4001 gaaaccagga tgtatttaaa acattcaaag taatcctcct cttcataata
4051 tttcctacat aggttcttca ttaaatattc aagtgggcat ggattcaata
4101 tcctatcagt gaaatattga ttcctagaat tgctattaaa aaccagttca
4151 accaactcct tatatgtttc atgatgaaac aaggtataat caaagtcctt
4201 aacctcatgt ttggatgtct ccgattcaat aacacagagt atttcttttg
4251 cccacaatga ctttagagga ttcttatcat ctggtccagt tccaattcta
4301 ggttccacat tggctgcttt gcttaagcat tcattgacct ccatttctat
4351 tttctcaatc atttctaact gttcatcagt tatctcgtcc aaaaactcat
4401 cctgagacat ctcaagttta ttttcttttg gtgttttgtc actcacaaga
4451 gaaaggaacc ttttgtatat tttatatttt aaagtgtgtg gatccaactt
4501 gtacctcaat ttatttttga atccctcaga caaatcaaca atcactgatg
4551 aaactactgc tgcataatcg tatgtactaa gtgggttgcc caactcatcc
4601 agttttggca ccacaacact cttattgcta ctcatatcca atgcagtact
4651 tgtaaatgaa ggagactgtg gatccctttt caacttgcca ttcacatcca
4701 gttctcctaa attgaacaat gaacaacaaa gactcataac agtagggtta
4751 actcctggtt tactaatttg atctgatgta ttcaattgct tacttaggag
4801 tctatctatg tctaaaagaa ttttggactc ctcttcttct gtcatattac
4851 catttaaact agagtttaca atgactgatc caaaatctat ttttggctcc
4901 atgaactttt caaaacattt aatttgatca gtcaatctat ctggagtctc
4951 ttttgtgatc agatggcaca agtaagacac attcaacaaa aacttaaatg
5001 ttttagacat atttggttga tttgacatat ttaacagtgc aactactaaa
5051 tcatcagcta atgtcattgt tgcccactct gacctacttt tgacttcaac
5101 ctctagtttg gccaataact gaacatgatg aatttcattg acatatgcca
5151 ttaaaaagta tctcaatcct tgcagataaa gttgcaccct tttggacgga
5201 catgctaaaa ctgataagat caaccttctt agcatagatg atatcaggtt
5251 caagtcatca cccttgatga agtccaacca tgacaacatc tcttgagtca
5301 ttgacaacaa aacctgttgt gacattatag gcaaaaagaa tctcttaggg
5351 tcacaataaa atgagactat atggccaacc ttgccactgt ttgagcataa
5401 tgaataacat ctgttccttt ctcctgtctt ctgataaagt aatgaaacac
5451 catatgcatg gtgtaaactt tgaaaaaaac attcttcaca tttaacagtg
5501 ccgtagtaat catttggttg atttatatga aatctggaag tccctgatgt
5551 cttcatcgaa ttaaccaaac ctagactaag tgtggacaag gaatcaagat
5601 actgtttaaa tgttgattct ttcatctcca gccattcaat aacttcagga
5651 tcagtctttt catgaacctc ttcttctgaa actgtgtact gtatttccag
5701 tcttctttca aatgtagttg agtacaattc taaataattt gaccataagt
5751 ccaaatcaag ctcaactaaa tgaggcctta caaacacctt aaaatcttcc
5801 tgaatgtacc caggaagcaa atttaatttt aacatcactt tggacaacca
5851 ctgagggttt cttgtgcact tcttattata aagatcaatg ataagtgacg
5901 gggacaccag cctatcatta acagattgaa gacaaccacc caccattaaa
5951 tcaaacacaa tttctccgta ggttctcagt aaactcagaa atgcattaaa
6001 catgaccaca tccagtgata ataatgtgtt tctcctagta tttagaatct
6051 tttgcccttt tatcttatta catgtagaga gtataagacc atattctctc
6101 cttatcatac caattctagg agcttctttc tcatctgtag tctgtctctt
6151 cagcaagcca aggaccttga ttaggtgatt tgaacataag tggcagtccc
6201 ctttactatc aaatttcgaa acccttgaca cctttaaaag agaatgctct
6251 tttaacttat tcaacagaaa gtcttggtta gtttgagtgt aggccctttc
6301 cacagtgcct gactctaatc taagcctaaa ttcattaaat atctcaatta
6351 gcttcagtct gcattctcca aggctcatgt ttggtctaat gttctttgtg
6401 aaaagagctt gaagtttttt cttgtacgtc aggccagttt gcttcaattg
6451 gctaatggac tctaatccaa gattctggtt ttccatagta gacagactat
6501 gaatcagtct gctgtattct gtttcctcaa tatcctcacc ctcatcttta
6551 agactatcca tgacttttag taacaaccac ctcaatctct caatcaccca
6601 atccggtatt gcctcaacat aatagttact cctcccatca ataacaggaa
6651 ccaatgttat gccatatgat gttaaatctt tggcaagact cattaacttt
6701 tcaaaatctg ctgcatattt tttctcaaaa gcagattgat tggacctcac
6751 gaaaacctcg aggagtataa ggacatcccc acatagataa taaccatcag
6801 gtgtgcattc cgggagggtt ggaccaacca acttatgatc tttgagtatc
6851 atgttgactg ttttattcct attcggaatg catttgtgct ttagacaaga
6901 gtcaacttcc actatgagtg acagtaattt gagaccttct ataacaacag
6951 ccctggtgtg aacctgggat aaggtcaaag atttttgttc tatataatgt
7001 tcttcatctg ggacccattt tcttatgaga tcctttagtt ctgaaattat
7051 ttccgtcatg atctaggaag cctaggatcc tcggtgcg