Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-B1_Za-Mil-g138-2006, complete genome.
ACC No: EU628591
Dated: 2008-09-30 | Length: 2682 | CRC: -1243304785
ID EU628591; SV 1; circular; genomic DNA; STD; VRL; 2682 BP.
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AC EU628591;
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DT 30-SEP-2008 (Rel. 97, Created)
DT 30-SEP-2008 (Rel. 97, Last updated, Version 1)
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DE Maize streak virus isolate MSV-B1_Za-Mil-g138-2006, complete genome.
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KW .
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OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RP 1-2682
RX PUBMED; 18753214.
RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.;
RT "Recombination, decreased host specificity and increased mobility may have
RT driven the emergence of maize streak virus as an agricultural pathogen";
RL J. Gen. Virol. 89(PT 9):2063-2074(2008).
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RN [2]
RP 1-2682
RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA Windram O.P., Lefeurve P., Lett J.-M.;
RT ;
RL Submitted (10-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL Electron Microscope Unit, University of Cape Town, RW James Bld,
RL Rondebosch, Cape Town, WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2682
FT /organism="Maize streak virus"
FT /specific_host="Digitaria ciliaris"
FT /isolate="MSV-B1_Za-Mil-g138-2006"
FT /mol_type="genomic DNA"
FT /country="South Africa"
FT /lat_lon="29.77 S 30.76 E"
FT /collection_date="2006"
FT /db_xref="taxon:10821"
FT CDS 157. .462
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ACF40412.1"
FT /translation="MDPQNSFFVQPRVPTTAPTSGGVSWSRVGEVAILSFVALIVFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGIQAVDRSNPIPNSQAPPIQGNPGPFVPGTG"
FT CDS 473. .1207
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACF40413.1"
FT /translation="MSTSKRKRGDDSNWNKRTTKKKPSSGGLKKAGSKAERPSLQIQTL
FT QHAGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADSQACKYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1711. .2529)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="ACF40414.1"
FT /translation="MASSSSNRQFSHRNVNTFLTYPHCPENPEILCQMIWELVGRWTPK
FT YIICAREAHKDGDMHLHALIQTEKPVRITDSRFFDIKGFHPNIQSAKSVNKVRDYILKE
FT PLALFERGTFIPRKSSFLGNPSKGNSEKKPSKDEIMREIISHSTSKLEYLSMVRKEFPY
FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIFQVSPESYML
FT LQPTCYTLEEAISDLAWMDELSSQQMKEQESRASTSSVQQGQENLLGPEA"
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SQ Sequence 2682 BP; 696 A; 624 C; 665 G; 697 T; 0 other;
eu628591 Length: 2682 30-SEP-2008 Type: N Check: 2893 ..
1 taatattacc gcgccttctt tttctgcgag ggcccggagg gaccgagcga
51 tttgatttaa agttcggttc tgctttgtct gatttatcta aagcagccca
101 atctaaagaa accggtcccc tgcgactata aattgtctaa caagtgcgat
151 tcattcatgg atccacagaa ctccttcttt gtacagccgc gggtacccac
201 aacagctccg acatccggag gagtgtcgtg gagtcgcgta ggcgaggtag
251 ctattttgag ctttgttgct ttgattgtct tttacctgct ttacctttgg
301 gtgctgagag atcttatctt agttctgaag gctcgacaag gcagatccac
351 ggaggagctg atatttggaa tacaagctgt ggataggagc aaccctatcc
401 ctaattcaca ggcaccacca attcagggga atcccgggcc gtttgttcca
451 ggcacgggat aagcaatcag ccatgtccac gtccaagagg aagcggggag
501 atgattcgaa ctggaataag cggacgacta agaagaagcc ttcttcaggt
551 ggtctgaaga aggctggaag caaggccgaa aggccatccc ttcagatcca
601 gacactccag catgctgggt ccaccatgat aaccgtcccc tccggaggag
651 tatgtgacct catcaacacc tatgcccgag gatctgacga gggcaaccgc
701 cacaccagcg agactctgac gtacaagatt gccgtcgact accacttcgt
751 tgcagactcg caagcctgca agtattctaa caccgggacc ggtgtgatgt
801 ggctggtgta cgacaccact cccggcggac aagcgccgac cccacaaacc
851 atatttgcat atccggacac gctgaaagct tggccggcaa catggaaagt
901 gagccgggag ctgtgtcatc gcttcgtggt gaaacggcga tggttgttca
951 acatggagac cgacggtcga attggttcgg acatccctcc ttcgaatgca
1001 agttggaagc cgtgcaagcg caacatctac ttccacaagt tcacgagtgg
1051 gttgggagtg agaacgcagt ggaagaatgt aacggacgga ggagttggtg
1101 cgatacagag aggagctctg tacatggtca ttgcccctgg caatggcctt
1151 acatttactg cccatgggca gacccgtctg tactttaaga gtgtcggcaa
1201 ccagtaatga ataaaaactc cgttttatta tatctgatga atgctcaaag
1251 cttacattaa tatgtcgtgc gatggcacga aaaacacact ggaacgcagc
1301 cccgggctaa agaccgggtc tcaagagacc ctgcgataca aaacatcgaa
1351 aaaacaagat ctatatgaat tacacttcct ccgtaggagg aagcacaggg
1401 ggagaatacc acttctcccc cggcgacatt ttataaatca tgcagtttgc
1451 ctcgaaatac tccagctgcc ctggagtcat ttccttcatc cagtcttcat
1501 cccagttggc gaggatgatt gtaggcttag acttcatctg aactttcttc
1551 ttcttgccat attttggatt tacaacgaac tctttctgac agccaactaa
1601 ctgtttccaa caaggacaga atttaaaagg aatatcatct acgatgttgt
1651 agattgcgtc ttcgttgtaa gaagaccaat caacattatt ttgccaataa
1701 ttatgaagcc ctaagcttct ggcccaagta gattttcctg tccttgttgg
1751 accgacgatg tagaggctct gctttcttgt tccttcatct gttggctgga
1801 taattcatcc atccatgcaa ggtcagagat agcctcttcg agggtgtaac
1851 aggttggttg aagaagcatg tatgattcgg gactaacctg gaagatgtta
1901 ggctggagcc aatctttgat tgactcatta caaagaagat caggtgaaga
1951 gggtggatga ggactgatga actcttcctg aatctcaggg aacaatttat
2001 ttgcagagta ttcgaaatac tgcaattttg tggcccagtc ataggggaat
2051 tctttacgaa ccatagagag gtactctagc tttgaagtgg agtgtgaaat
2101 aatctctctc attatttcat ctttggaagg tttcttttca gaatttccct
2151 tggaaggatt tcctaggaag cttgacttcc taggaatgaa agtacctctc
2201 tcaaacaagg ccagaggttc cttgagaatg taatccctga ccttgtttac
2251 tgattttgca ctctgaatgt ttgggtggaa ccctttgata tcaaagaacc
2301 ttgagtcagt gattcttacc ggtttctctg tctggattaa tgcatgtaaa
2351 tgcatatctc catctttatg tgcctctcgg gcacatatga tatacttcgg
2401 ggtccaacga ccaacgagct cccaaatcat ctgacagagg atttctggat
2451 tttctggaca gtgtggatat gttaagaacg tgttaacgtt cctgtgtgag
2501 aactgacggt tggatgagga ggaggccata tcggacgact ccgagcagct
2551 tgcgggatgg caggatggga gctccaaact ctatatcaac cggttgcgcc
2601 ttcgaaatcc gccgctcccc cttttatagt ggttgttgat gggccggacc
2651 gggccggccc agcaggaaaa gaaggcgcgc aa