Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus isolate CBQ63 putative aphid transmission factor mRNA, partial cds; and capsid protein and movement protein mRNAs, complete cds.
ACC No: EU647736
Dated: 2010-05-03 | Length: 613 | CRC: 572390309
ID EU647736; SV 1; linear; mRNA; STD; VRL; 613 BP.
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AC EU647736;
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DT 03-MAY-2010 (Rel. 104, Created)
DT 03-MAY-2010 (Rel. 104, Last updated, Version 1)
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DE Sugarcane yellow leaf virus isolate CBQ63 putative aphid transmission
DE factor mRNA, partial cds; and capsid protein and movement protein mRNAs,
DE complete cds.
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KW .
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OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
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RN [1]
RP 1-613
RA Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT "Sugarcane yellow leaf virus causing yellow leaf disease in India:
RT Molecular characterization and identification of three genotypes";
RL Unpublished.
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RN [2]
RP 1-613
RA Viswanathan R., Balamuralikrishnan M., Karuppaiah R.;
RT ;
RL Submitted (10-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Sugarcane Breeding Institute, Sugarcane Main Road,
RL Sugarcane, Coimbatore, Tamil Nadu 641 007, India
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FH Key Location/Qualifiers
FH
FT source 1. .613
FT /organism="Sugarcane yellow leaf virus"
FT /host="Saccharum sp. hybrid cv. Q63"
FT /isolate="CBQ63"
FT /mol_type="mRNA"
FT /country="India"
FT /collection_date="12-Jan-2008"
FT /db_xref="taxon:94290"
FT CDS 1. .>613
FT /codon_start=1
FT /transl_except=(pos:589. .591,aa:OTHER)
FT /product="putative aphid transmission factor"
FT /note="ORF5; readthrough protein"
FT /protein_id="ACH42768.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARAG
FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVGDAPTT"
FT CDS 1. .591
FT /codon_start=1
FT /product="capsid protein"
FT /note="ORF3"
FT /protein_id="ACH42766.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARAG
FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK"
FT CDS 32. .484
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF4"
FT /protein_id="ACH42767.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRLTTSRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSQFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKPSRPPSSGGKTS"
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SQ Sequence 613 BP; 177 A; 170 C; 146 G; 120 T; 0 other;
eu647736 Length: 613 03-MAY-2010 Type: N Check: 4059 ..
1 atgaatacgg gcgctaaccg ttcacgaagg aatgtcagaa gacgcgctaa
51 ccgtcgtcga cagactcggc cagtggtcgt ggtccggcct gccgcaggac
101 ctagacgagt acgacgacgt agagcacgtg ctggaggaaa cgctgtgcga
151 ggaccgggag gaagaagcaa cagggatgtt ctcactttca cgattgacga
201 cctcaaggcc aactcaaccg ggatcctcaa attcggaccg aacttatctc
251 agtacgcagc gttcaacaat ggcttactca aagcctacca tgagtataaa
301 atcacaagtc tcacaattca gtataactca tgctcctccg acgcaactcc
351 aggtgcaatc gcacttgaag tggatacatc ctgctcccaa acaacaacag
401 gctccaagat tactagcttc cccgtcaaga ggaacgccaa gaaaaccttc
451 ccggccccct tcatcagggg gaaagacttc atgactacat cagctgacca
501 gttttggctt ttgtacaaag ggaatggaga cggaagccta gcaggacaat
551 tcgtctgccg atttgaatgt ttattccaga atcccaaata ggtaggcgac
601 gctcccacaa cac