Sequence of DPV Nemesia ring necrosis virus

Nemesia ring necrosis virus strain WA replicase-associated protein RP gene, partial cds; and coat protein CP gene, complete cds.

ACC No: EU684142

Dated: 2008-07-22 | Length: 1779 | CRC: 1366041509

                
ID   EU684142; SV 1; linear; genomic RNA; STD; VRL; 1779 BP.
XX
AC   EU684142;
XX
DT   22-JUL-2008 (Rel. 96, Created)
DT   22-JUL-2008 (Rel. 96, Last updated, Version 1)
XX
DE   Nemesia ring necrosis virus strain WA replicase-associated protein RP gene,
DE   partial cds; and coat protein CP gene, complete cds.
XX
KW   .
XX
OS   Nemesia ring necrosis virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymoviridae;
OC   Tymovirus; unclassified Tymovirus.
XX
RN   [1]
RP   1-1779
RX   PUBMED; 18600295.
RA   Segwagwe A.T., Putnam M.L., Druffel K.L., Pappu H.R., Eastwell K.C.;
RT   "Molecular characterization of a new tymovirus from Diascia ornamental
RT   plants";
RL   Arch. Virol. 153(8):1495-1503(2008).
XX
RN   [2]
RP   1-1779
RA   Eastwell K.C., Segwagwe A.T., Druffel K.L., Pappu H.R.;
RT   ;
RL   Submitted (30-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Pathology, Washington State University, 24106 North
RL   Bunn Road, Prosser, WA 99350, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1779
FT                   /organism="Nemesia ring necrosis virus"
FT                   /specific_host="Diascia hybrid cultivar"
FT                   /strain="WA"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="Apr-2002"
FT                   /db_xref="taxon:312009"
FT   CDS             <1. .1035
FT                   /codon_start=1
FT                   /product="replicase-associated protein RP"
FT                   /protein_id="ACF40328.1"
FT                   /translation="AQHKVNDGSIFGSWKACQTLALMHDYVIMTLGPVKKYQRILDHND
FT                   RPRHIYTHCGKTPSQLASWCQEFACEGLSLCNDYTSFDQSQHGEAVVLECLKMRRCSIP
FT                   DSLIQLHLHLKTNISTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSQYQMGSTACMVSG
FT                   DDSVIFSSPPTHPSWAAVKDLLHLRFKTESTFQPLFCGYYVGPHGCCRNPYALFAKLMI
FT                   STDKGNISDTLPSYLYEYSIGHRLGDACLDLVPDHLHSYLSACFDFFCRKASPLQKTLL
FT                   SFDEPSPSVLKKLASSSAWASSPLLAELDDQSLQALLARSNLPSSHLDARVQRLESELL
FT                   HSFQ"
FT   CDS             1037. .1615
FT                   /codon_start=1
FT                   /product="coat protein CP"
FT                   /protein_id="ACF40329.1"
FT                   /translation="MEELKPVSVKQPSIPAPGTKLPPAPGQQSSAIVQPFQISVTDLGV
FT                   AEVNVQITLSSDPTLSQLTAFYRHADLVECSAVLFPNFTSSSNPTHCDLAWVPANSTAS
FT                   PKAILRTYGGNRFTLGGPITANEVISIPLPMNSVNCTIKDSVMYTDSPRLLAYSPAPLT
FT                   AKTTPSGTLVIRGKVRLSSPLLQPLTASS"
FT   3'UTR           1616. .1779
XX
SQ   Sequence 1779 BP; 361 A; 662 C; 345 G; 411 T; 0 other;

eu684142 Length: 1779  22-JUL-2008  Type: N  Check: 1  ..

       1  gctcagcaca aggtcaatga cggctccatc ttcggatcct ggaaagcctg
      51  ccagactctc gcactcatgc atgactatgt catcatgact ctgggcccgg
     101  tgaagaagta ccagcgcatt ctcgaccaca acgatcgacc ccggcacatt
     151  tacacccact gcggcaaaac cccttctcaa ctagcttctt ggtgtcagga
     201  gttcgcctgc gaaggccttt ccctgtgcaa tgactacacg tctttcgacc
     251  aaagtcaaca cggcgaagcc gtcgtgctag agtgtctcaa gatgcgtcgc
     301  tgcagcatcc cggattcctt gatccaactc cacttgcacc tcaaaaccaa
     351  catctccacc cagttcggac ccctcacatg catgcgcctc actggcgaac
     401  caggcactta cgacgacaac acggattaca atctggctgt catctactcc
     451  cagtaccaaa tgggttccac cgcctgcatg gtgtcgggag acgattccgt
     501  catcttttcc tcgcccccaa cccatcccag ctgggcggcc gtcaaagacc
     551  tcctccatct ccgtttcaaa actgagtcca ctttccagcc cctcttctgc
     601  ggctactacg tcggccccca cgggtgctgc cgcaacccct acgccttgtt
     651  cgcaaaactg atgatctcca cggacaaagg caacatttcc gacacactcc
     701  cttcctacct ttacgagtac tccataggcc atcgccttgg cgacgcctgc
     751  ctcgatctcg tgcccgacca tctccactcc tacctcagcg cctgctttga
     801  cttcttctgc cggaaagcct cgcccctgca gaagactctc ctcagcttcg
     851  acgagccttc cccgtctgtg ctcaagaagc tggcgtcctc ttcagcttgg
     901  gcctctagcc ccctcctggc tgaactcgac gaccagtcac ttcaggcact
     951  tcttgcccga tccaatctgc caagctccca cctcgacgcc agggttcaaa
    1001  ggcttgagtc tgaattgctt cactcatttc aataacatgg aagaactcaa
    1051  acctgtcagc gtcaaacagc cctctattcc cgctcccggc accaagcttc
    1101  ctcctgcacc gggtcagcaa tcatccgcca tcgttcaacc cttccagatc
    1151  tccgtcaccg acctcggcgt cgccgaagtc aacgttcaga tcaccctctc
    1201  ctcggacccc actctctctc agctcacagc tttctaccgt catgctgacc
    1251  tcgtggaatg ctccgctgta ctcttcccaa acttcacctc ttcatccaac
    1301  cccactcact gtgatctcgc ctgggttccc gccaattcca ccgcgtcacc
    1351  caaggcaatc cttcgaacct acggtggcaa tcgcttcacc ctcggaggcc
    1401  ccatcaccgc gaacgaggtg atctccattc ctctgcccat gaactctgtc
    1451  aactgcacca tcaaagacag cgtcatgtac accgactcac cccgtcttct
    1501  agcctactct ccggcccctc tcacggccaa aaccacccct tccggcactc
    1551  ttgtcattcg tggcaaggtc cgtctctctt cccccctcct ccagcctctc
    1601  acagcttcct cgtgagggtg gcgcacacca tagtgcgtag tgtttcggct
    1651  tccacttaaa tcgaaagcca acccctccag ttttctggtt gttcctcgga
    1701  tcgctacgtc caccagattt gtgtaatctg gccgttagga acttaaaatt
    1751  gcgcggagtt cgaatctccc cctgtcccg