Sequence of DPV Grapevine fanleaf virus

Grapevine fanleaf virus isolate W8 polyprotein gene, partial cds.

ACC No: EU702451

Dated: 2009-05-13 | Length: 1762 | CRC: 854708250

                
ID   EU702451; SV 1; linear; genomic RNA; STD; VRL; 1762 BP.
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AC   EU702451;
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DT   13-MAY-2009 (Rel. 100, Created)
DT   13-MAY-2009 (Rel. 100, Last updated, Version 1)
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DE   Grapevine fanleaf virus isolate W8 polyprotein gene, partial cds.
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KW   .
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OS   Grapevine fanleaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Comoviridae; Nepovirus; Subgroup A.
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RN   [1]
RP   1-1762
RA   Liebenberg A., Freeborough M.-J., Visser C.J., Bellstedt D.U., Burger J.T.;
RT   "Genetic variability within the coat protein gene of Grapevine fanleaf
RT   virus isolates from South Africa and the evaluation of RT-PCR, DAS-ELISA
RT   and ImmunoStrips as virus diagnostic assays";
RL   Virus Res. 142(1-2):28-35(2009).
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RN   [2]
RP   1-1762
RA   Liebenberg A., Freeborough M.-J., Burger J.T.;
RT   ;
RL   Submitted (07-MAY-2008) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, University of Stellenbosch, JC Smuts Building, Van der Bijl
RL   Street, Stellenbosch 7600, South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1762
FT                   /organism="Grapevine fanleaf virus"
FT                   /segment="RNA2"
FT                   /host="Vitis vinifera cv. Cabernet Sauvignon"
FT                   /isolate="W8"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa"
FT                   /collection_date="Apr-2008"
FT                   /db_xref="taxon:12274"
FT   CDS             <1. .1614
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ACH61803.1"
FT                   /translation="YFSIRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVVYIPK
FT                   DCQANRYLGTLNTRDMISDFKGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMSFD
FT                   AYNRITSRITASADPVYTLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRL
FT                   HFTCLTGNNKELAADWQAVVELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFF
FT                   DLTDVTALKSAGLTLGQVPMVGTTKVYNLNSALVSCVLGMGGTIKGKVHICAPIFYSIV
FT                   LWVVSEWNGTTMDWNEFFKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLN
FT                   FYAIAGPIAPSGETARLPVVVQIEEIVRPDLSLPSFEDDYFVWVDFSEFTLDREEIEIG
FT                   SRFFDFTSSTCKVAMGENPFAAMIACHGLHSGILDLKLQWSLNTEFGKSSGSITITKLV
FT                   GDKAMGLDGPSRVFAIQRLEGTTDLLIGNFAGANPNTHFSLYSRWMAIKMDQAKSIKVL
FT                   RILCKPRPGFSFYGRTSFPV"
FT   mat_peptide     <1. .198
FT                   /product="movement protein"
FT                   /note="2B"
FT   mat_peptide     199. .1611
FT                   /product="coat protein"
FT                   /note="2C"
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SQ   Sequence 1762 BP; 440 A; 330 C; 436 G; 556 T; 0 other;

eu702451 Length: 1762  13-MAY-2009  Type: N  Check: 4621  ..

       1  tacttctcta tcaggagtcg ctcaagatct gtgaggatcg atagaaacgt
      51  tgatcttcca caacttgagg ctgagcccag gttgagctca accgtgaggg
     101  gattagctgg tagaggagtg gtctacattc ctaaggattg ccaggcaaat
     151  aggtacttgg gcaccttgaa tacacgtgat atgatctcag atttcaaggg
     201  tgttcagtat gaaaagtgga taactgcagg actagtcatg cctactttta
     251  agatagttgt taggctacct gcaaatgctt tcactggatt gacgtgggtg
     301  atgagttttg acgcctacaa ccggataact agtagaatta ctgctagtgc
     351  agatcctgta tacaccctgt cagtccctca ttggcttatc caccataagt
     401  tgggcacgtt ttcatgtgag atagactatg gagaattgtg cggtcacgcc
     451  atgtggttta agtccacaac atttgaatct cctaggttac atttcacgtg
     501  tttaacgggt aacaacaaag aactagcggc agactggcaa gctgtcgtag
     551  agttgtatgc cgagttggaa gaggccacct cttttcttgg aaaaccaact
     601  ttggtttttg atccaggtgt tttcaatggc aaattccaat ttcttacttg
     651  ccctcccatt ttttttgatt tgacagacgt tacggctctc aagagtgctg
     701  ggctgacatt gggtcaggtc ccaatggttg gcactaccaa ggtttataat
     751  ctgaacagtg ctcttgtaag ttgtgttctg ggtatgggag gtactattaa
     801  agggaaggtt cacatttgtg cgccaatctt ttatagtatt gttttgtggg
     851  ttgtcagcga gtggaacggg accactatgg attggaatga atttttcaaa
     901  tatcccggag tgtatgtgga agaagacgga agctttgaag ttaaaatccg
     951  ctctccatat caccgaacgc ctgctagatt gcttgctggt caaagtcaaa
    1001  gggatatgag ctccctaaac ttttatgcaa tagcaggacc tattgctcct
    1051  tcgggtgaga ctgcacgact ccctgttgtc gtgcagattg aggaaattgt
    1101  gcgcccagac ctttccttac cgagttttga agatgattat ttcgtgtggg
    1151  tagacttctc cgagtttact cttgataggg aagaaattga gattggatct
    1201  cgtttctttg attttacttc aagcacttgt aaggttgcta tgggagagaa
    1251  cccatttgct gcgatgattg cctgccatgg attgcacagt ggtattttag
    1301  atctcaaact tcagtggagt ttaaataccg agtttggcaa aagtagcggg
    1351  agcattacta ttacgaagct ggtaggtgat aaggccatgg gcctggatgg
    1401  accgtctcga gtttttgcaa tacaaagact ggagggaacc acagatttgt
    1451  tgattgggaa ttttgcagga gcaaacccaa acacccattt ctccctctac
    1501  agtcgatgga tggcaattaa aatggatcaa gcaaagagta tcaaggtact
    1551  ccggatcttg tgtaagcctc gtccaggttt cagtttttat ggaagaacca
    1601  gtttcccagt ctagggtatc tgactttaaa agacccatat gtacgtggtt
    1651  atttcttttg ttttgattgt gtgcattgct ttgtgttata atttgtttta
    1701  acttgtttac tgctttagtg tgtttaattt catgctttta gtggcgacag
    1751  tgtgttgttt gt