Sequence of DPV Citrus yellow mosaic virus
Citrus yellow mosaic virus, complete genome.
ACC No: EU708317
Dated: 2009-07-01 | Length: 7498 | CRC: -2053925788
ID EU708317; SV 1; circular; genomic DNA; STD; VRL; 7498 BP.
XX
AC EU708317;
XX
DT 22-JUN-2008 (Rel. 96, Created)
DT 01-JUL-2009 (Rel. 101, Last updated, Version 3)
XX
DE Citrus yellow mosaic virus, complete genome.
XX
KW .
XX
OS Citrus yellow mosaic virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7498
RA Baranwal V.K., Prasanna Kumar B.K., Singh J., Ahlawat Y.S.;
RT "Genome characterization and variability analysis in Citrus yellow mosaic
RT virus infecting acid lime isolate from Andhra Pardesh, India";
RL Unpublished.
XX
RN [2]
RP 1-7498
RA Baranwal V.K., Prasanna Kumar B.K., Singh J., Ahlawat Y.S.;
RT ;
RL Submitted (08-MAY-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Virology Unit, Division of Plant Pathology, Indian Agriculture
RL Research Institute, Pusa Road, New Delhi, New Delhi, Delhi 110012, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .7498
FT /organism="Citrus yellow mosaic virus"
FT /host="acid lime"
FT /mol_type="genomic DNA"
FT /country="India:Andhra Pardesh"
FT /db_xref="taxon:174178"
FT CDS 230. .661
FT /codon_start=1
FT /product="unknown"
FT /note="hypothetical protein; ORF I"
FT /protein_id="ACE76862.1"
FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY
FT DRLSLFSRVSIKNFKSIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKTEVKALVTE
FT IAKQPKLIEAQALQLTENLNQKLDRVESLIAKVERWVHS"
FT CDS 658. .1071
FT /codon_start=1
FT /product="unknown"
FT /note="hypothetical protein; ORF II"
FT /protein_id="ACE76863.1"
FT /translation="MNYQATEKTPTYKRALEATESINSPALGFINPEDYSGGITGTKAL
FT IKQNNLLIQLVVEFSVNVNSLSDQVAQLTKQLGKQPQQGSSTTALPDDLVEKLRNLSLD
FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ"
FT CDS 1068. .6974
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains aspatic protease, RNase H, and RT; ORF III
FT ZnF_C2HC; zinc finger"
FT /protein_id="ACE76864.1"
FT /translation="MSSSRARTVVERLPPVTTSRVDERDNTPLYDDQIRDYRQWQRRRH
FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIH
FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVV
FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG
FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSSADVQGQQWFLR
FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEVPLDEDEEQIR
FT NHTIALWREEHEVWDTLGEPSGKFDFYVRYTRPAHALLDPAHIIATGWDDLDDNPTSPS
FT NNIRTYQTPSSSDEDDDMSYLQYLAQQSPVPPTTQNFTNPFSEGGGESTYPYPSFQPPF
FT DLQSDDSYSTLATWSEYDAMSQSNSPSSHSADTVLDFDRYSFTTSEDDVVQSAWISENL
FT FRENTGNGEVHNLVPPRPDTPRGDEVKGTQESMAHTVAVTTEELKHEAEFDYPAFARLQ
FT AHEESGQPKPKTEKVLSSAISSYTPPRDTAMTPVAYPPAQNVAGPSYNPSPQMPMFEGY
FT YPKRPNFKRDNHAFISLPSAHQSTGALFLMPQQIGLFHEVFTSWEAITKAYVAQQGITD
FT PKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMRRVFSLED
FT PATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMP
FT GDLGQRMKKAYEEKHPGNIIGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPG
FT YYGGKSGEKRYGVRRTTTYKGKPHSTHARIEKTKHLRNKKCKCYLCGEEGHFARECPND
FT RRNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEEAGTLEEQCFVFQEECNG
FT TYWLGKRGGYQDLVQISKEIYYCQHEWEENQPINDPAHVRCYPCKRETTQRARLHCKLC
FT HITSCLMCGPTYFNKKITVQPIPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQ
FT LAQERELQLQLEQSRKELAGTDARRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKT
FT RPVRNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGI
FT NSKQQVKQKLKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVRLEGN
FT TITFYKQITSINTRLAAPLLKQEEEEKEEELNLEEHRLIQEMVAYSTERPFVQFQQKFA
FT GLIQDLKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLKHVTPQMEESFRKHVE
FT ALLKIGAIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYS
FT LPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLKN
FT APAVFQRKMDHCFKGTEAFIAVYIDDILVFSKTEKEHEEHLQIMLSICQRNGLILSPTK
FT MKIAQAEIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIP
FT HMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCM
FT DGWGGVCKWKIAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAVMNSLNNFKIYYLDKS
FT SLCLRTDCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNIEHIDGKNNHLADALS
FT RLVTGFVFAEPQCQDKFQDDLGRLEAALQEKKEAPQAMHAEYVSLLIRSADRITLSLCS
FT MRDSSRNRTYSCRPGKEPTKALICEQKSCQSKGDLVNTRTVHSKSAFNQQDNWWPSTNT
FT NSLTSEAKRQGTTHMPISYPHAIGTTSNCVKWSSY"
FT CDS 2233. .2502
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF IV"
FT /protein_id="ACE76865.1"
FT /translation="MILMIIQLVHQIIFAPIRPLPLLMRMMTCLISNTLLNNHLSLLLH
FT RILPILFRKVVGNLPTLTPHFNHHSTFNQMTHIVLWQLGVNMML"
FT CDS 3931. .4218
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF V"
FT /protein_id="ACE76866.1"
FT /translation="MKVIQIVTPSSVFPKEKKLELLRNNVLCSRKNAMERIGLVKEVDI
FT RISCKSLRRSTIVSTNGRRINPLMIQHMFGVTLARGKPLRELAYIASYAT"
FT CDS 6548. .7012
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF VI"
FT /protein_id="ACE76867.1"
FT /translation="MSRQVPGRFREVGSSSSGEERGSASNARRICLPVDQISGPHYPLA
FT LLYEGLVSQQNLLMQARQRTNEGLNLRTEVMPIQRRLSEYEDCALQECIQSARQLVALH
FT QHKLAYIRSKATRDNAYADKLPTCNRDHEQLCEVVELLEGISERISDTAV"
XX
SQ Sequence 7498 BP; 2312 A; 1617 C; 1675 G; 1894 T; 0 other;
eu708317 Length: 7498 01-JUL-2009 Type: N Check: 1398 ..
1 tggtatcaga gcttggttat gttcttacaa cgatgggagc ttaaaacctt
51 ccattaggtc tgaggaaaga gttggttgta tggtgtgtta attcctatct
101 gtgttgttat ttctatgttc ctgatataga taacgatcat cgcgaaaagg
151 gtgaaggcac tatatctggc agcgagagga gagtaagtcc agtgaaaccc
201 ttcgcatgac gctaaaggtg atctaatcta tgtctagaat ttgggaagaa
251 gcaatacaga gatggtatga gacatcccat acagctaatc tcgagtactt
301 agatctagct tcaaaaccta aagtttccaa ttcagaaatc tcacataacc
351 ttgctgtagt ttatgatcgt ttaagtctgt ttagccgtgt ctctattaaa
401 aacttcaaaa gtatccaaga aaccctagaa aaacaagacc ttagaatcca
451 aaaacttgag tccagtctga aaaccttaac tagtgagttt atagcccata
501 aaccgttgtc caaaactgag gtgaaagcct tagtaacaga aattgccaaa
551 cagcctaagc ttattgaagc acaggccctt cagctcacag aaaacttgaa
601 ccagaagctt gatagggttg aatccctgat agctaaggtt gaacggtggg
651 ttcattcatg aactatcagg ctactgaaaa gactcccact tacaaaagag
701 ctttggaagc tacagagtct attaacagtc cagcccttgg tttcataaat
751 ccagaagatt attccggagg cattactggc acaaaggcct tgatcaagca
801 gaacaatttg ctcatccaac ttgttgtgga attttctgtc aacgtcaaca
851 gtttgtccga tcaagttgct cagcttacaa agcaacttgg aaagcagccc
901 caacaaggct catcaacaac agccttacct gacgatttgg ttgaaaaact
951 caggaacctt tccttagata ctgagaaaaa gaaggagaag cgtggtacct
1001 tctacgctta caaagaccca tacctgatct acaaggaaga ggtagaaaag
1051 ctaaagaaac agcaacaatg agcagtagcc gtgcaagaac agtggtggaa
1101 cgactcccac cagtaaccac ttcccgagta gacgagcggg ataacactcc
1151 cctctatgat gatcaaatac gggattatag gcagtggcag cggcggcggc
1201 acaacatggg gcggagatgg aatcagttga taggacgacc ctacaatcag
1251 accttggaac aggttgtgga ccctgaagta gctttacagc tatcaatgca
1301 ggagcgtgcc agactagtac cagcagaggt actttatagg tccaggagtg
1351 atgatcggca ccaccaagtt tacattcaca gatcagagga ggcaatcctt
1401 tgtgttgatg gtgatcaagt tgaccggtta cttatacaac cggaaagtgc
1451 tgaacaacta aacaggagcg gtatgtcctt tattcatatg ggcatagttc
1501 aagtccggat ccagatccta cacaggcaac atgagggaac aacagccctt
1551 gtggttttca gggataatcg gtggcaagga gaccagtcaa tattcgctac
1601 catggagctt gatttaacta aaggtatgca gatggtgtac ataatcccgg
1651 acaccatgat gacagtcagg gacttctgcc ggaatgttca aatttccata
1701 ttaacaaaag gatatgggaa ttggcagaat ggcgaggcaa atctgcttgt
1751 tacaagggga attgttggac gattatcaaa tacccctaat gtggcctttg
1801 cctatcagat ccaaaatgtt accgactact tggtcagcca tggaattcaa
1851 gcattgccag gacggcggta ttcatctgca gatgtacagg gccaacaatg
1901 gtttctacga ccatccaata ttccagctgt tccaatggcc cccactaacg
1951 tggatacacg caacatgata gacggatcta tttctctcag attcaacagt
2001 taccaaccag ctccagatcc ggcacctgtt gcttataatc aacatgatga
2051 ggaggtacct cttgatgagg atgaagaaca gatccgtaat cacaccattg
2101 ctttatggcg tgaggaacac gaggtatggg atacccttgg tgaaccctcg
2151 ggtaaatttg atttttatgt tcgttacacc cgacctgcac atgctttact
2201 agaccctgct cacattattg ccactggttg ggatgatctt gatgataatc
2251 caactagtcc atcaaataat attcgcacct atcagacccc ttcctcttct
2301 gatgaggatg atgacatgtc ttatctccaa taccttgctc aacaatcacc
2351 tgtccctcct actacacaga attttaccaa tcctttttcg gaaggtggtg
2401 gggaatctac ctacccttac ccctcatttc aaccaccatt cgaccttcaa
2451 tcagatgact catatagtac tttggcaact tggagtgaat atgatgctat
2501 gagtcaatca aacagtcctt catcacacag tgcggatact gtccttgatt
2551 ttgacagata ttcttttaca acaagtgagg atgacgtggt tcaatcagcc
2601 tggatctctg aaaatctatt tcgtgaaaac accggaaacg gtgaagttca
2651 caatcttgtt ccacctagac cggacacccc tcggggtgat gaggtcaaag
2701 gaactcaaga atccatggcc catactgttg cagtaaccac agaggaatta
2751 aaacatgagg ctgaatttga ctatccggct tttgccagat tacaagccca
2801 tgaagagtca gggcaaccca agcccaaaac tgaaaaggtt ctgtcctcag
2851 caatttcttc atatacccca ccaagggata ctgcaatgac acctgttgca
2901 tatccaccgg ctcaaaacgt tgccggccca agttacaatc caagcccaca
2951 aatgcccatg tttgaagggt attatcccaa aaggccaaat ttcaagaggg
3001 ataatcatgc ctttatcagt cttccctcgg cccaccaaag tactggggct
3051 ttatttctta tgcctcaaca aattggcctg tttcatgagg tttttacttc
3101 atgggaagca atcaccaaag cttatgttgc tcaacagggt atcacagacc
3151 caaaagataa ggccgatttc attgaaaata tgttgggtcc aacagagaaa
3201 ataatttgga ctcaatggcg aatgggctac gccgatgaat atgagaacct
3251 tgtcacaaca gctgacggac gtgagggtac tcagaatatc ctctctcaga
3301 tgcgaagggt cttttcctta gaagatccag caacaggttc aactgcagtc
3351 caagatgaag cctatagaga tttggaaagg cttacctgtg attctgtcaa
3401 gcatatagtc caatatttaa atgactttat gcggattgca gcaaaaactg
3451 ggcgcatgtt cataggccca gagctaagtg aaaagttgtg gcttaaaatg
3501 ccaggtgact taggccaaag gatgaagaag gcctacgaag aaaaacatcc
3551 agggaacatt attggtgttt gccctaggat cttgtttgcc tataagtatt
3601 tagaaggcga gtgtaaagat gcagcgttca gacgctccct gaaaaatcta
3651 tccttttgca gctcaatccc tatcccaggc tattacggtg gtaaaagtgg
3701 agaaaagcgt tatggtgtaa ggcgcacaac cacttataag ggaaagcctc
3751 atagcaccca tgcaaggatt gaaaagacaa aacatttgcg caataaaaag
3801 tgcaagtgtt atctgtgtgg agaagaaggt cacttcgccc gggaatgtcc
3851 aaatgaccgg cgaaatgtga aacgagttgc aatgttcgaa ggtttagacc
3901 tcccagatga ctgtgagata gtctccatcg atgaaggtga tccagatagt
3951 gacgccatct tcagtatttc cgaaggagaa gaagctggaa ctcttgagga
4001 acaatgtttt gtgttccagg aagaatgcaa tggaacgtat tggcttggta
4051 aaagaggtgg atatcaggat ctcgtgcaaa tctctaagga gatctactat
4101 tgtcagcacg aatgggagga gaatcaaccc attaatgatc cagcacatgt
4151 tcggtgttac ccttgcaaga gggaaaccac tcagagagct cgcttacatt
4201 gcaagctatg ccacataaca tcttgcctta tgtgtggccc cacctatttt
4251 aacaagaaga ttactgtcca gccaatacct caagcaccct tcaaccaaaa
4301 aggattgcta cagcaacaac aagagtacat cgcctggtgc aacaatgaaa
4351 ttgccagatt aaaggaagaa gttgcttttt ataagcagct tgcccaggaa
4401 agagagttgc aattacaact cgagcagtcc agaaaggaac tcgcaggaac
4451 agacgctcgc aggcgaaaag acaaaggagt agtaattgat gagggatcat
4501 gctacttcaa cccagaagaa acaactagaa tcgttgctca tggagataca
4551 caggttacta aaaccagacc agtgaggaat atgctctaca acatggatgt
4601 gcgaatggag attccaggca tcccagcttt tacagtaaag gcgattcttg
4651 acacaggagc aacaacctgc tgtattgaca gcagaagtgt accaaaagat
4701 gcccttgaag agaattcatt tgtggtaaat ttctcaggca tcaattccaa
4751 gcagcaagtt aagcagaagc ttaaagctgg aaaaatgttc atcaatgagc
4801 attacttccg gatcccatat tgttacagct ttgagatgca aattggtgat
4851 ggcatccaac ttatccttgg gtgcaacttt atacgaagta tgtacggtgg
4901 tgtacgatta gaaggtaata ctataacctt ctacaagcag ataacaagta
4951 tcaacaccag gcttgctgca cctctcctta agcaagaaga agaggagaaa
5001 gaagaagaac tcaacctgga agagcacagg ttgattcaag aaatggttgc
5051 atactccact gagcggccat ttgttcagtt ccaacaaaag tttgcagggc
5101 ttattcaaga cttaaaagcc cagggataca ttggggaaga gcctatgaag
5151 tattgggcca aaaaccaagt tgtttgccat ctggacatta aaaacccaga
5201 tatggtaatt gaagatcgcc cactgaagca tgtgacaccc cagatggaag
5251 aaagctttcg aaagcatgtg gaagccctgt taaaaatagg agcaatccgg
5301 cccagtaaaa gtcgacacag aaccacagct ataatagtca actctggaac
5351 cagcatagac cctatcacag ggaaggaggt taagggaaag gagcgaatgg
5401 tctttaacta taaaaggtta aatgacctaa ctaataaaga tcagtacagc
5451 cttcctggaa tccagactat cctgcagaga ttaaagggga gcacaatatt
5501 ttccaaattc gacctaaaaa gtggctttca tcaggtagca atgcacccag
5551 attcggtaga atggacagct ttttgggtgc ccagcggtct ctatgaatgg
5601 ttagtcatgc cattcgggtt aaagaatgcc ccagcagtgt tccaaagaaa
5651 gatggatcac tgtttcaagg gaacagaagc ctttattgct gtttatattg
5701 atgatatcct ggtgttctca aagactgaaa aggagcatga agagcactta
5751 cagattatgc tctcgatctg ccaaaggaat gggcttattc tgagcccaac
5801 aaagatgaaa attgcccaag ctgagatcga attccttggg gcaatcattc
5851 ataacgggct tatcaagtta cagccccata ttgttcagaa gttgctaact
5901 tttaccaaca agcaacttga ggaggtcaaa gggcttagat catggctggg
5951 tctgttgaac tatgcaagga gctacattcc tcatatgggc cgcctactta
6001 gcccattata tgccaaagtc agcccaactg gtgagcggag aatgaacagg
6051 caagactggg ccttaattga caaaataaga gcccaagtcc agaacttgcc
6101 agccctggag ctaccacctg cggactgttt catcatcatt gaaacagatg
6151 gatgcatgga tggttgggga ggagtctgca aatggaagat agcacaatac
6201 gaccctagga gttcagaaag ggtttgtgcc tatgcaagtg ggaagttcaa
6251 cccgccaaag tcaacaattg atgcggagat acatgcagtg atgaacagcc
6301 tcaacaactt taaaatctat tacctagaca agtccagttt atgtttgagg
6351 actgactgtc aagctattat tagcttcttt aataagtcca atgttaacaa
6401 accgtctagg gttagatgga ttgctttcac agatttcctt actggtctag
6451 gaatccctgt aaatatagag cacatagatg gaaaaaataa ccatctggct
6501 gatgctctgt ccagattagt aactggtttt gtttttgcag aaccacaatg
6551 tcaagacaag ttccaggacg atttagggag gttggaagca gctcttcagg
6601 agaagaaaga ggctccgcaa gcaatgcacg cagaatatgt ctccctgttg
6651 atcagatcag cggaccgcat taccctctcg ctctgctcta tgagggactc
6701 gtctcgcaac agaacctact catgcaggcc aggcaaagaa ccaacgaagg
6751 ccttaatttg cgaacagaag tcatgccaat ccaaaggcga cttagtgaat
6801 acgaggactg tgcactccaa gagtgcattc aatcagcaag acaactggtg
6851 gccctccacc aacacaaact cgcttacatc agaagcaaag cgacaaggga
6901 caacgcatat gccgataagc tacccacatg caatcgggac cacgagcaac
6951 tgtgtgaagt ggtcgagcta ttagaaggaa tctcagaaag gatcagcgat
7001 acagctgtct aggacagctg gcttcaatta tggagcgtga tggacccccc
7051 cgcaataatc caaagtttgg tgtgaattga gtagtgcgtc tttatggacc
7101 actactttat tgtaataatt gacgcttttt gtagtgcgct cttagtgcgc
7151 tctactttat gctttcgctt ttgtaagtgc gtctgtcttt cttcagatgc
7201 ttatccttta agcatctttt gctttttgcg tggcatcctt tagttcacaa
7251 tttaaagaat gacgatgggg cccaagatgt gcacccggtt ctctaaattg
7301 cctatataag gatatgccat agccttgttt ttgcaagtca ggaatacctg
7351 agcataactt ggctaagcaa aagtttgtaa gtgttctaag ctttcctttg
7401 taagctttct gttttgtttt aataaaatct ctcgtcaatc gttgtgaaca
7451 catattgttt gtttatattg ttgtattgta tttgttgcaa aatcgtaa