Sequence of DPV Pepino mosaic virus

Pepino mosaic virus isolate PV-0632 pop-variant mutant 22 capsid protein gene, complete cds.

ACC No: EU730962

Dated: 2011-03-31 | Length: 714 | CRC: 666810761

                
ID   EU730962; SV 1; linear; genomic RNA; STD; VRL; 714 BP.
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AC   EU730962;
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DT   31-MAY-2009 (Rel. 101, Created)
DT   31-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE   Pepino mosaic virus isolate PV-0632 pop-variant mutant 22 capsid protein
DE   gene, complete cds.
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KW   .
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OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Potexvirus.
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RN   [1]
RP   1-714
RX   PUBMED; 20192825.
RA   Candresse T., Marais A., Faure C., Dubrana M.P., Gombert J., Bendahmane A.;
RT   "Multiple coat protein mutations abolish recognition of Pepino mosaic
RT   potexvirus (PepMV) by the potato rx resistance gene in transgenic
RT   tomatoes";
RL   Mol. Plant Microbe Interact. 23(4):376-383(2010).
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RN   [2]
RP   1-714
RA   Candresse T., Marais A., Faure C., Dubrana M.P., Bendahmane A.;
RT   ;
RL   Submitted (20-MAY-2008) to the EMBL/GenBank/DDBJ databases.
RL   UMR GDPP, INRA, 78 Avenue E. Bourleaux, Villenave d'Ornon 33883, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .714
FT                   /organism="Pepino mosaic virus"
FT                   /isolate="PV-0632"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /pop_variant="mutant 22"
FT                   /db_xref="taxon:112229"
FT                   /culture_collection="DSMZ:PV-0632"
FT   CDS             1. .714
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:C4MMD0"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:C4MMD0"
FT                   /protein_id="ACI01030.1"
FT                   /translation="MENQPTASNPSDAPPTATQAGAQSPADFSNPNTAPSLSDLRKIKY
FT                   VSTVTSVATPAEIEALGKIFIAMGLAANETGPAMWDLARAYADVQSSKSAQLIDATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
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SQ   Sequence 714 BP; 196 A; 191 C; 145 G; 182 T; 0 other;

eu730962 Length: 714  31-MAR-2011  Type: N  Check: 233  ..

       1  atggaaaacc aacctacagc ttctaaccca tcagatgcac caccaactgc
      51  tactcaagct ggtgcccaga gcccagctga cttctcaaat cctaatacag
     101  ctccttccct aagtgatttg aggaagatca aatacgtgtc aactgtcact
     151  tcagttgcca cgcctgctga aattgaggcc cttggcaaga tctttattgc
     201  catgggttta gcagccaatg agaccggacc tgccatgtgg gacctcgctc
     251  gtgcttatgc tgatgtgcaa agttcaaaat ctgcacaact tatagatgcc
     301  acaccatcca accctgcttt gtctagacgt gcacttgctg cacagtttga
     351  tcgtatcaat atcacaccca gacaattctg catgtatttt gcaaaaattg
     401  tttggaacat actgttagac agcaatgtgc cacctgccaa ctgggcaaaa
     451  ttgggctatc aggaagatac caagtttgct gcttttgact tttttgatgg
     501  agtcacaaac ccagctagtc tacagcctgc agatggccta atcaggcagc
     551  ccaatgaaaa agagcttgct gctcactcgg ttgctaaata tggtgccctt
     601  gcccgccaga aaatatccac tggtaactac atcaccaccc ttggtgaagt
     651  tacacgtggt cacatgggcg gagccaacac tatgtacgca attgatgcac
     701  ctcctgaact ttaa