Sequence of DPV Shallot virus X
Shallot mite-borne latent virus isolate IPO-DLO coat protein (CP) gene, complete cds; and putative nucleic acid binding protein (NABP) gene, partial cds.
ACC No: EU835196
Dated: 2009-04-01 | Length: 912 | CRC: -415948577
ID EU835196; SV 1; linear; genomic RNA; STD; VRL; 912 BP.
XX
AC EU835196;
XX
DT 21-JUL-2008 (Rel. 96, Created)
DT 01-APR-2009 (Rel. 100, Last updated, Version 2)
XX
DE Shallot mite-borne latent virus isolate IPO-DLO coat protein (CP) gene,
DE complete cds; and putative nucleic acid binding protein (NABP) gene,
DE partial cds.
XX
KW .
XX
OS Shallot mite-borne latent virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Allexivirus; unclassified Allexivirus.
XX
RN [1]
RP 1-912
RA Perez-Egusquiza Z., Ward L.I., Clover G.R.G., Fletcher J.D.,
RA Van der Vlugt R.A.A.;
RT "First report of Shallot virus X in shallot in New Zealand";
RL Plant Pathol. 58(2):407-407(2009).
XX
RN [2]
RP 1-912
RA Perez-Egusquiza Z.C., Ward L.I., Clover G.R.G.;
RT ;
RL Submitted (18-JUN-2008) to the EMBL/GenBank/DDBJ databases.
RL Ministry of Agriculture and Forestry, Plant Health and Environment
RL Laboratory, 231 Morrin Road, St. Johns, Auckland 1140, New Zealand
XX
FH Key Location/Qualifiers
FH
FT source 1. .912
FT /organism="Shallot mite-borne latent virus"
FT /host="shallot"
FT /isolate="IPO-DLO"
FT /mol_type="genomic RNA"
FT /country="Netherlands"
FT /collected_by="Rene Van der Vlugt"
FT /db_xref="taxon:547128"
FT gene 49. .837
FT /gene="CP"
FT CDS 49. .837
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:B5ABX2"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:B5ABX2"
FT /protein_id="ACF37242.1"
FT /translation="MNEDDLNRLNASGDLNGANNQRIPAGPSGVNQPTPSVTAGGQNQF
FT RPSGGLGNQGARPTEPSNQDELLPTEAEIEAITSDVESNSVAPKATIREILDALQAKRQ
FT NATPKDLFSLAWACYHNGSSRFVNLNTDAPCGITHAELKDLVEGFCTLRQFCSYYAKSC
FT YVSGKQQKKPPANWSRKGYPEEAKFAGFDFFNAVLSESSPAPPGGMRFKPTQAEILGHS
FT MNAKMSIVESRQSSHMVSTRADLLGRQQINEQPKPPMITF"
FT gene 837. .>912
FT /gene="NABP"
FT CDS 837. .>912
FT /codon_start=1
FT /gene="NABP"
FT /product="putative nucleic acid binding protein"
FT /db_xref="InterPro:IPR008891"
FT /db_xref="UniProtKB/TrEMBL:B5ABX3"
FT /protein_id="ACF37243.1"
FT /translation="MHPHDLNLLCCLHFSKPSLPNDLKT"
XX
SQ Sequence 912 BP; 256 A; 263 C; 206 G; 187 T; 0 other;
eu835196 Length: 912 01-APR-2009 Type: N Check: 7729 ..
1 atttaggggt gaaggtctgt gttaagttgt cgggtagctc gaaatacaat
51 gaacgaagac gatttgaatc gtttgaatgc atcaggggac ctcaacggcg
101 ccaataatca acgaatcccg gcgggaccat ctggcgtcaa ccaaccgacc
151 ccgagcgtaa ctgcaggtgg tcaaaaccaa ttcagaccct cgggaggact
201 aggcaaccaa ggcgcgcgcc caactgaacc aagtaatcag gatgaactat
251 tgcccaccga agccgagatt gaagccatca ctagtgacgt ggagtccaat
301 tctgtagcac ccaaggccac cattcgcgaa atcttggacg ccttgcaagc
351 taagaggcaa aatgccaccc cgaaagatct attctcatta gcctgggcct
401 gctaccacaa tggatcctca aggttcgtga acttgaacac tgacgcccct
451 tgcggaataa cgcacgcgga gcttaaagac cttgtggaag gcttctgcac
501 actcaggcag ttctgcagct actacgctaa atcatgctac gtttcaggaa
551 aacagcagaa gaaacctcct gctaattggt ctcggaaagg atatcctgaa
601 gaggccaagt ttgccggctt cgacttcttc aatgcagtgc tgagcgagtc
651 ttccccagct ccaccgggcg gaatgcggtt caaacccacg caagctgaaa
701 ttctcggcca ctcaatgaac gccaaaatgt ccatagtcga gtcccgacaa
751 tcatcgcaca tggtctcaac tagagcagac ctcctaggcc gccaacagat
801 taacgaacaa cccaagccgc cgatgataac tttctgatgc atccccacga
851 tctaaatctt ctttgctgcc tacatttctc gaaaccttcc ctgcccaacg
901 acctcaaaac tc