Sequence of DPV Sweet potato leaf curl Spain virus
Ipomoea yellow vein virus isolate ES:Mal:IG1:06, complete genome.
ACC No: EU839576
Dated: 2009-06-18 | Length: 2791 | CRC: -191140478
ID EU839576; SV 2; circular; genomic DNA; STD; VRL; 2791 BP.
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AC EU839576;
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DT 18-JUN-2009 (Rel. 101, Created)
DT 18-JUN-2009 (Rel. 101, Last updated, Version 1)
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DE Ipomoea yellow vein virus isolate ES:Mal:IG1:06, complete genome.
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KW .
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OS Ipomoea yellow vein virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Available-Online prior to print
RP 1-2791
RX PUBMED; 19515824.
RA Lozano G., Trenado H.P., Valverde R.A., Navas-Castillo J.;
RT "New begomovirus species of recombinant nature in sweet potato (Ipomoea
RT batatas) and I. indica: taxonomic and phylogenetic implications";
RL J. Gen. Virol. 0:0-0(2009).
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RN [2]
RP 1-2791
RA Trenado H.P., Lozano G., Navas-Castillo J.;
RT ;
RL Submitted (20-JUN-2008) to the EMBL/GenBank/DDBJ databases.
RL Virology, CSIC, Mayora Algarrobo-Costa, Algarrobo-Costa, Malaga 29760,
RL Spain
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RN [3]
RC Sequence update by submitter
RP 1-2791
RA Trenado H.P., Lozano G., Navas-Castillo J.;
RT ;
RL Submitted (16-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Virology, CSIC, Mayora Algarrobo-Costa, Algarrobo-Costa, Malaga 29760,
RL Spain
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CC On Jun 17, 2009 this sequence version replaced gi:213958828.
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FH Key Location/Qualifiers
FH
FT source 1. .2791
FT /organism="Ipomoea yellow vein virus"
FT /host="Ipomoea indica"
FT /isolate="ES:Mal:IG1:06"
FT /mol_type="genomic DNA"
FT /country="Spain"
FT /collection_date="Jun-2006"
FT /clone="IG1"
FT /db_xref="taxon:653358"
FT gene 42. .440
FT /gene="V2"
FT CDS 42. .440
FT /codon_start=1
FT /gene="V2"
FT /product="MP"
FT /protein_id="ACJ54739.1"
FT /translation="MMALLYKDQSGCRAWRPSMAEMWDPLQNPLPDTLYGFRCMLSVKY
FT LQGILKKYEPGTLGFELCSELIRIFRVRQYDRANARFAEISSLWGETGKTEAELRDSYR
FT ALHWECCPNCCPKLCPDFKKRPDEEKEG"
FT gene 265. .1029
FT /gene="V1"
FT CDS 265. .1029
FT /codon_start=1
FT /gene="V1"
FT /product="CP"
FT /protein_id="ACJ54740.1"
FT /translation="MTGRMRVSPRFHPYGGRQVRRRLNFETAIVPYTGNAVPIAARSYV
FT PISRSVQMKRRRGDRIPKGCVGPCKVQDYEFKMEVPHSGTFICVSDFIRGTGLTHRLGK
FT RVCIKSMGIDGKVWMDDNVAKRDHTNIITFWLIRDRRPNKDPLTFTQAFTMYDNEPTTA
FT KIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFKSLYNHVTYNHKEEAKYENHLE
FT NALMLYSASSHASNPVYQTLRCRSYFYDSLKN"
FT gene complement(1026. .1463)
FT /gene="C3"
FT CDS complement(1026. .1463)
FT /codon_start=1
FT /gene="C3"
FT /product="REn"
FT /protein_id="ACJ54741.1"
FT /translation="MDSRTGESLNHAQITRAAEFFNNPMSVGQTAPFHLRLMYVHTNNL
FT DSKTIMKVQLQVNHRNRREIGFQKIFLQFRIITTRLIGAIPNWTGISNRLKWRICNSLA
FT SLGYFSLFNLVYVIRHLPQQCLWVEEVDVIDCKDDIKVLLY"
FT gene complement(1177. .1626)
FT /gene="C2"
FT CDS complement(1177. .1626)
FT /codon_start=1
FT /gene="C2"
FT /product="TrAp"
FT /protein_id="ACJ54742.1"
FT /translation="MSTAPSGYKRKCPAQEPIHAAAKKRQRKIPEPRTRIVWKGCGCSA
FT FITNACKFQHGFTHRGVTKSCTDYESSRILQQSHVCGSDCTIPSTTDVCPYKQPRLKDD
FT HESAASSQPPEQEGNWIPEDLPPIPDHNNASDWCYSQLDWYFQSP"
FT gene complement(1535. .2629)
FT /gene="C1"
FT CDS complement(1535. .2629)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep"
FT /protein_id="ACJ54743.1"
FT /translation="MPRKQGFRVQAKNIFLTYPKCSLSKEQALEQLRATHCPSDKLFIR
FT VSQEKHQDGSLHLHVLIQFKGKAEFKNPRHFDLQHPHNSSQFHPNFQAAKSSSDVKSYI
FT EKDGDYLDWGEFQIDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKFIFQYH
FT NLVSNLDRIFSPPPSVYSSPFSISSFNNVPDIISDWAAENVMDAAARPERPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEALKNWAVKNAVFCDVDSPF
FT WIQEEVSRSGTNTRGGQEEAEENS"
FT gene complement(2215. .2472)
FT /gene="C4"
FT CDS complement(2215. .2472)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /protein_id="ACJ54744.1"
FT /translation="MGLCISMFSSSSRGKQSSKTHDISTYNIHITPPNSIQISRQLSPP
FT RMSSHTSRRTETTSTGVNSRSTADLLEEASRLLTTLPQRH"
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SQ Sequence 2791 BP; 726 A; 579 C; 657 G; 829 T; 0 other;
eu839576 Length: 2791 18-JUN-2009 Type: N Check: 3719 ..
1 accggtgccc gccgcgcccc cttttgtggg tcccacgaat aatgatggca
51 ttgctttata aggaccaatc aggttgccgt gcttggcgcc caagtatggc
101 tgaaatgtgg gatcctcttc agaacccact accagatact ttatacggtt
151 tcaggtgtat gctttccgtt aaatacctac aaggtatttt gaagaaatac
201 gagccaggaa ccctagggtt cgagctctgt tcggagttaa tccgtatatt
251 cagggtcagg cagtatgacc gggcgaatgc gcgtttcgcc gagatttcat
301 ccctatgggg ggagacaggt aagacggagg ctgaacttcg agacagctat
351 cgtgccttac actgggaatg ctgtcccaat tgctgcccga agctatgtcc
401 cgatttcaag aagcgtccag atgaagagaa ggaggggtga tcgcattccg
451 aagggatgcg tgggtccttg taaggtacag gattacgaat tcaagatgga
501 agtcccacat agtgggacct ttatttgtgt ttctgatttt attagaggta
551 ctgggcttac ccatcgtttg ggtaagaggg tgtgtattaa gtccatgggt
601 attgatggta aggtttggat ggatgacaac gtcgccaaga gggaccacac
651 caacatcatt actttctggt tgatccgaga taggaggccc aataaggatc
701 cattgacgtt tacacaggcg tttacaatgt atgataacga gcccactact
751 gctaagatcc gaatggatct gagagataga atgcaggtgt tgaagaaatt
801 ttctgttact gtttccggtg gtccttataa ccacaaagag caggctttgg
851 ttcggaagtt ttttaagagt ttgtataatc atgttactta taatcataag
901 gaggaagcta agtatgagaa tcatttagag aatgcattaa tgttgtattc
951 tgctagcagt catgctagca atcctgtgta tcagacactg cgttgcaggt
1001 cttattttta tgactcgctc aaaaattaat aaagaagtac ttttatatca
1051 tctttgcaat ctattacatc gacttcttct acccacaagc attgttgtgg
1101 taaatgtcta attacataaa ctaaattaaa caatgaaaaa taacctaaac
1151 tagctaaact attacaaatt cgccatttaa ggcgattgga aataccagtc
1201 caattgggaa tagcaccaat cagacgcgtt gttatgatcc ggaattggag
1251 gaagatcttc tggaatccaa tttccctcct gttccggtgg ttgacttgaa
1301 gctgcacttt catgatcgtc tttgagtcta ggttgtttgt atggacatac
1351 atcagtcgta gatggaatgg tgcagtctga cccacagaca tgggattgtt
1401 gaagaattct gctgctctcg taatctgtgc atgatttagt gactccccgg
1451 tgcgtgaatc catgctggaa cttgcaggcg ttggtgatga aggctgaaca
1501 accgcagccc ttccacacta tccttgtcct tggctcagga attttcctct
1551 gcctcttctt ggccgccgcg tgtattggtt cctgagcggg acacttcctc
1601 ttgtatccag aaggggctgt cgacatcaca gaaaactgcg tttttcacag
1651 cccagttctt cagtgcttct tgctctggct tgtccagcca gagtttaaat
1701 gaagagcctt ctcctggatt gcagaggaag atagtgggta ttccaccttt
1751 aatttgaact ggctttccgt atttacaatt gctttgccag tccttctggg
1801 cccccatgaa ctctttaaag tgctttaggt attgggggtt gacgtcatca
1851 atgacgttat accaagcact gttgctatac acctttggac tcaggtccaa
1901 atgcccacac agataattat gtggtcctaa ggatctagcc caaactgttt
1951 tacctattct acttggccct tctataacta tacttatggg cctctctggc
2001 cgcgcagcgg catccatgac attctcagca gcccaatcgc tgataatgtc
2051 aggaacatta ttgaaagaag aaatggaaaa aggtgaagaa tatacagaag
2101 gaggaggaga aaatatccta tctaaattgc taactaaatt atgatattga
2151 aatataaatt tttcagggag tttctccctg attatttgta acgcagcttc
2201 tttagaacct gcgtttaatg cctctgcggc agcgtcgtta gcagtctgct
2251 ggcctcctct agcagatctg ccgtcgatct ggaattcacc ccagtcgagg
2301 tagtctccgt ccttctcgat gtatgacttg acatccgagg aggacttagc
2351 tgcctggaaa tttggatgga attgggagga gttatgtgga tgttgtaggt
2401 cgaaatgtcg tgggtttttg aactctgctt tccccttgaa ctggatgaga
2451 acatggagat gcaaagaccc atcttggtgt ttctcttggc taactctgat
2501 aaacagttta tcagacgggc aatgggttgc ccttaattgc tcaagcgctt
2551 gctctttaga taaagaacat ttggggtacg ttaagaaaat atttttggct
2601 tgaactctaa acccttgctt acgtggcatt ttgaatcgga ggctctcaaa
2651 gctctacgga attggaggat ttggaggact atatatagtg agcctccaaa
2701 tggcattttg gtaatttaga agttcatttt acctttaatt caaattccga
2751 caattctggg accaccaaaa ggcgggcacc gtattaatat t