Sequence of DPV Pelargonium line pattern virus
Pelargonium line pattern virus isolate SPA0 clone 2 putative movement protein (p7), putative movement protein (p9), and coat protein (CP) genes, complete cds.
ACC No: EU852913
Dated: 2011-01-28 | Length: 1817 | CRC: 507294174
ID EU852913; SV 1; linear; genomic RNA; STD; VRL; 1817 BP.
XX
AC EU852913;
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DT 01-JUL-2009 (Rel. 101, Created)
DT 28-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Pelargonium line pattern virus isolate SPA0 clone 2 putative movement
DE protein (p7), putative movement protein (p9), and coat protein (CP) genes,
DE complete cds.
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KW .
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OS Pelargonium line pattern virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae.
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RN [1]
RP 1-1817
RX PUBMED; 20979982.
RA Castano A., Ruiz L., Elena S.F., Hernandez C.;
RT "Population differentiation and selective constraints in Pelargonium line
RT pattern virus";
RL Virus Res. 155(1):274-282(2011).
XX
RN [2]
RP 1-1817
RA Castano A., Ruiz L., Hernandez C.;
RT "Sequence variability of distinct isolates of Pelargonium line pattern
RT virus";
RL Unpublished.
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RN [3]
RP 1-1817
RA Castano A., Ruiz L., Hernandez C.;
RT ;
RL Submitted (26-JUN-2008) to the EMBL/GenBank/DDBJ databases.
RL Instituto de Biologia Molecular y Celular de Plantas, Ingeniero Fausto Elio
RL s/n, Valencia, Valencia 46022, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .1817
FT /organism="Pelargonium line pattern virus"
FT /host="Pelargonium zonale"
FT /lab_host="Chenopodium quinoa"
FT /isolate="SPA0"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /clone="2"
FT /db_xref="taxon:167019"
FT gene 208. .399
FT /gene="p7"
FT CDS 208. .399
FT /codon_start=1
FT /gene="p7"
FT /product="putative movement protein"
FT /db_xref="GOA:C6F3J3"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:C6F3J3"
FT /protein_id="ACJ38439.1"
FT /translation="MDIQSKDTNLSVKEAGKSAKRGSTKNKLDIAHSGVSKGTSRDLVG
FT ANFVTVADKVEFVVHLNF"
FT gene 305. .571
FT /gene="p9"
FT CDS 305. .571
FT /codon_start=1
FT /transl_except=(pos:305. .307,aa:Met)
FT /gene="p9"
FT /product="putative movement protein"
FT /note="non-canonical start codon"
FT /db_xref="UniProtKB/TrEMBL:C6F3J4"
FT /protein_id="ACJ38440.1"
FT /translation="MEYPRVHLAILSVLILSQLLIKWNLWSISISSCLPQPHLLHPNLL
FT VCIVLCIFFSSVLSQGQSYSYSYFSTSTSDKFISVAVGNGGQG"
FT gene 555. .1571
FT /gene="CP"
FT CDS 555. .1571
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:C6F3J8"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:C6F3J8"
FT /protein_id="ACJ38441.1"
FT /translation="MAAKDNPAVLAAVARREQWAIKLQSKGWGSLSKAQKATARSYGIG
FT NPPAVVVPRTTRLVAGNPMNVRRARGEPGNAKMGTTITKQEYMGELHSSSKIETYLLDP
FT KNVRSFPQLSGLAIGYNKYKITDFKVRYSPKCSDSECGLTIAYSSDSSDPPPKNKFNLF
FT SMNNKYETAAHKPLLVTLPVSKETRFLRDKCTDDSKLVDSGAVHVLVDGNHEGRLGELF
FT FELTIVFSEPTFCNHHSQVIKGLKESEGPEYVKLEPDKETVKLVFQAAGAYLISIVASK
FT LERIGQLGASEGDKLVVESTDKSACLCRIEAEQPGSAVVLVYASREAITLRAYIDKL"
XX
SQ Sequence 1817 BP; 482 A; 440 C; 472 G; 423 T; 0 other;
eu852913 Length: 1817 28-JAN-2011 Type: N Check: 1814 ..
1 gaaaatggcc ttctacgggg actactattg gaagtgggtc aaccagcata
51 acggcaagta tgaaccggtg actgaggaag ctcggcactc gttccacttg
101 gcgtttgggg tcagccctga ccaacagttg gccttggagg ctatatactc
151 ccgcaagtcg ctactttggg agtcctcccc ctttacattt gaagttggcg
201 ctatcgaatg gatattcaat caaaagatac caatctaagt gtaaaggagg
251 cagggaaatc agcaaagcgc ggaagtacaa agaacaagct agacatagct
301 cacagtggag tatccaaggg tacatctcgc gatcttgtcg gtgctaattt
351 tgtcacagtt gctgataaag tggaatttgt ggtccatctc aatttctagt
401 tgcttaccac agccacattt gttgcaccct aatctacttg tctgcatcgt
451 gttgtgcatc ttctttagtt cagttcttag ccagggacag agttatagtt
501 atagttactt ttcaactagc accagtgata aattcatctc agtagctgta
551 ggaaatggcg gccaaggata atccggcggt cctcgcagct gtggcaaggc
601 gggagcaatg ggcgatcaag ctccaatcca agggttgggg ctctctgtcc
651 aaggcccaaa aagccactgc acgctcgtac gggataggga accctccggc
701 agtcgtggtg cctcgcacta ctcggctggt ggctggaaac cccatgaacg
751 tacggcgggc gcggggagag cctggcaatg ccaaaatggg caccaccatt
801 accaagcaag aatacatggg cgagcttcat tcttcttcaa agattgaaac
851 ttacttgctc gaccccaaga atgtgaggag cttccctcag ctaagcgggc
901 ttgcaatcgg ctataacaag tacaagatca ctgacttcaa ggtgcggtac
951 agtcccaaat gtagcgacag tgagtgtggg ttaaccatag cttactccag
1001 cgactcttca gacccaccgc cgaagaacaa attcaacttg tttagcatga
1051 acaacaagta cgaaacagcc gcgcacaagc cactcctagt aacacttccc
1101 gtgtctaaag agaccagatt cttgcgggat aagtgtactg atgattccaa
1151 gctcgtagat agtggggcgg tgcatgtctt ggtggacggg aatcacgaag
1201 gcaggctagg agaactcttc ttcgagttaa ccatcgtgtt ttccgaacca
1251 accttttgca accaccactc ccaagtcatc aaaggactca aagagagtga
1301 agggcccgaa tatgttaaac ttgagcctga caaggagacc gtgaaactgg
1351 ttttccaggc agcgggggcg tacttaattt ctatagtagc ctccaagcta
1401 gagcgaatcg ggcagcttgg tgcttctgaa ggtgacaagc tggtagttga
1451 aagtactgat aagagtgcct gcctctgtag aatagaggcg gagcaacccg
1501 gtagtgctgt agtattagtt tatgccagca gggaggctat taccctgcga
1551 gcttacatcg ataagctatg aggaaagcca ctgcggtggg gtcagtctcc
1601 tggtgcgcca acacccagaa ggggagacaa cttcagtggt tgataacccg
1651 acgcttagtg taagcctaga aaaaaccaaa aacagagtgc tactgctttc
1701 agtgtgcgag ctttaatcgc tcacttcctc cgtcgataaa atcccgattt
1751 ttcgggtggg cttcggcgga catccttaat gaagaacggg ggggtaaccc
1801 acccccctga tctgccc