Sequence of DPV Sweet potato leaf curl virus
Sweet potato leaf curl virus-Spain isolate ES:CI:BG12:02, complete genome.
ACC No: EU856364
Dated: 2009-06-18 | Length: 2829 | CRC: 1846596638
ID EU856364; SV 2; circular; genomic DNA; STD; VRL; 2829 BP.
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AC EU856364;
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DT 18-JUN-2009 (Rel. 101, Created)
DT 18-JUN-2009 (Rel. 101, Last updated, Version 1)
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DE Sweet potato leaf curl virus-Spain isolate ES:CI:BG12:02, complete genome.
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KW .
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OS Sweet potato leaf curl virus-Spain
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Available-Online prior to print
RP 1-2829
RX PUBMED; 19515824.
RA Lozano G., Trenado H.P., Valverde R.A., Navas-Castillo J.;
RT "New begomovirus species of recombinant nature in sweet potato (Ipomoea
RT batatas) and I. indica: taxonomic and phylogenetic implications";
RL J. Gen. Virol. 0:0-0(2009).
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RN [2]
RP 1-2829
RA Lozano G., Pinar-Trenado H., Navas-Castillo J.;
RT ;
RL Submitted (27-JUN-2008) to the EMBL/GenBank/DDBJ databases.
RL Fruticultura Subtropical y Fitopatologia, Estacion Experimental La Mayora,
RL Algarrobo-Costa, Malaga 29760, Spain
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RN [3]
RC Sequence update by submitter
RP 1-2829
RA Trenado H.P., Lozano G., Navas-Castillo J.;
RT ;
RL Submitted (16-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Virology, CSIC, Estacion Experimental La Mayora, Algarrobo-Costa, Malaga
RL 29760, Spain
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CC On Jun 17, 2009 this sequence version replaced gi:223047830.
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FH Key Location/Qualifiers
FH
FT source 1. .2829
FT /organism="Sweet potato leaf curl virus-Spain"
FT /host="Ipomoea batatas"
FT /isolate="ES:CI:BG12:02"
FT /mol_type="genomic DNA"
FT /country="Spain"
FT /db_xref="taxon:652719"
FT gene 99. .470
FT /gene="V2"
FT CDS 99. .470
FT /codon_start=1
FT /gene="V2"
FT /product="V2"
FT /protein_id="ACS44337.1"
FT /translation="MLFQSWCPSMADLWDPLQNPLPDTLYGFRCMLSVKYLQGILKKYE
FT PGTLGFELCSELIRIFRVRQYDRANSRFAEISSLWGETGKTEAELRDSYRALHWECCPN
FT CCPKLCPGFKRRPDEEKEG"
FT gene 295. .1059
FT /gene="V1"
FT CDS 295. .1059
FT /codon_start=1
FT /gene="V1"
FT /product="capsid protein"
FT /protein_id="ACS44338.1"
FT /translation="MTGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV
FT PVSRGVRMKRKRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK
FT RVCVKSMGIDGKVWMDDNVAKIDHTNIITYWLIRDRRPNKDPLNFVQVFTMYDNEPTTA
FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLE
FT NALMLYSASSHAINPVYQTLRCRAYFYDSHNN"
FT gene complement(1084. .1509)
FT /gene="C3"
FT CDS complement(1084. .1509)
FT /codon_start=1
FT /gene="C3"
FT /product="REn"
FT /note="replication enhancer protein"
FT /protein_id="ACM79921.1"
FT /translation="MDSRTGESLSRAQTMRALEFDTNPMSVGRTAPFYLRVIYVHQSAQ
FT GRTIIKFQMRVNYRERIALGFHKIFLQFRIVTTRLTGAFHSWTGILERLKWRICNELAN
FT IGFFSLINLVYVIRHLPESVRWIEEVDTIDCNDDVKA"
FT gene complement(1226. .1672)
FT /gene="C2"
FT CDS complement(1226. .1672)
FT /codon_start=1
FT /gene="C2"
FT /product="TrAP"
FT /note="transcriptional activator protein"
FT /protein_id="ACM79922.1"
FT /translation="MSNLPSGIKRKCPIQEPLHAEAKKAKRKAPETRTRIVWKGCGCSA
FT FITQTCKYQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTILPESNLRPPECTGENNH
FT QIPDEGQLQGENSSGIPQNIPAIQDSDDPANWCFSQLDWYFGTP"
FT gene complement(1581. .2675)
FT /gene="C1"
FT CDS complement(1581. .2675)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep"
FT /note="replication-associated protein"
FT /protein_id="ACM79923.1"
FT /translation="MAPPKRFRISSKNYFITYPRCSLSKEDCLSQLLNIQTPTNKKYMH
FT IAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYV
FT DKDGDTITWGEFQVDGGSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQFH
FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP
FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW
FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF
FT WNQEEVSHSGATARRGEEGQEESS"
FT gene complement(2261. .2518)
FT /gene="C4"
FT CDS complement(2261. .2518)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /protein_id="ACM79924.1"
FT /translation="MGNLTSMCLCSSKVNSSAQIADSSTLCHPQGRLTFTPTSRELNHR
FT PMSSPTLIRTGIPSPGVNSRSTADLLEEVSRLLMTQPQRP"
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SQ Sequence 2829 BP; 732 A; 603 C; 674 G; 820 T; 0 other;
eu856364 Length: 2829 18-JUN-2009 Type: N Check: 9013 ..
1 accggtgccc gccgcgccct tttaaagtgg gccccacatt ggggaccacg
51 cgtcttttct gttcttactt taatgatgac attgctttat aaggaccaat
101 gctgttccag tcttggtgcc caagtatggc tgatttgtgg gacccacttc
151 agaacccgct cccagatact ttatacggtt ttaggtgtat gctttctgta
201 aaatacctgc aaggtatttt gaagaaatac gagccaggaa ccttagggtt
251 tgagctctgt tcggaattaa tccgtatatt cagggtcagg cagtatgaca
301 gggcgaattc ccgtttcgcg gagatttcat ccctatgggg ggagaccggt
351 aagacggagg ctgaacttcg agacagctat cgtgccttac actgggaatg
401 ctgtcccaat tgctgcccga agctatgtcc cggtttcaag aggcgtccgg
451 atgaagagaa agaggggtga ccgcatcccg aagggttgtg tgggtccctg
501 taaggtccag gactatgagt tcaagatgga cgttccccac acgggaacgt
551 ttgtctgtgt ctcggatttt acaaggggga ctgggcttac ccatcgcctg
601 ggtaagcgtg tttgtgttaa gtcaatgggt atagatggga aggtctggat
651 ggatgacaat gtggccaaga tagatcacac caatatcatc acgtattggt
701 tgatccgtga cagaaggccc aataaggatc cgcttaattt tgttcaggtt
751 ttcaccatgt acgacaacga gccaactact gctaagatcc gaatggatct
801 gagggataga atgcaggtct tgaagaagtt ctctgttaca gtttcaggag
851 gcccctacag ccacaaggaa caggctttgg ttagaaagtt ttttaagggt
901 ttgtataatc atgtaactta caatcacaag gaagaagcta aatacgagaa
951 tcacttagag aatgccctta tgctgtatag tgctagtagt catgctatta
1001 atcctgtgta tcagaccctg cgttgcaggg cttatttcta tgattcacac
1051 aataattaat aaaattttat tttattaata cagttatgct tttacatcat
1101 cattacaatc tatagtatct acttcttcta tccatctaac tgattcaggc
1151 agatgcctga ttacataaac taaattaata agagaaaaaa aacctatatt
1201 agctaattca ttacagatac gccatttaag gcgttccaaa ataccagtcc
1251 aactgtgaaa agcaccagtt agccgggtcg tcactatcct gaattgcagg
1301 aatattttgt ggaatcccag agctattctc tccctgtagt tgaccctcat
1351 ctggaatttg atgattgttc tcccctgtgc actctggtgg acgtagatta
1401 ctctcaggta gaatggtgca gtccgaccca cagacatggg gttggtgtcg
1451 aattctagtg ctctcatagt ctgagcacga cttagtgatt cccctgtgcg
1501 tgaatccatg ctggtacttg caggtttggg tgatgaaggc tgagcagccg
1551 cagcccttcc acactatcct tgtccttgtt tcaggagctt tcctcttggc
1601 cttcttcgcc tctgcgtgca gtggctcctg aatgggacac ttcctcttga
1651 ttccagaagg gagattggac atcgcagaat atagcgtttg ctgttgccca
1701 attcttgagt gctccttgct ctggtttgtc caaccagagt ttaaatgaag
1751 agccctctcc tggattgcag aggaagatag tgggaattcc gcctttaatt
1801 tgaactggct tcccgtactt acagttggat tgccagtcct tctgggcccc
1851 catgaattcc ttaaagtgct ttaggtattg ggggttgacg tcatcaatga
1901 cgttatacca agcactgttg ctataaactt tagggcttag atctaaatgc
1951 ccacacaaat aattgtgagg gcccaaagat ctggcccata ctgttttgcc
2001 tattctgctt gggccttcaa taacaatgga tatgggtcta tccggccgcg
2051 cagcggaatc catgacattt tcagcggccc agtcgctgat aatgtcagga
2101 acggcattga aagaagaaga agaaaaaggt gaagaatata cagaaggtgg
2151 aggagaaaaa atcctatcta aattagaaac taaattatga aactgaaata
2201 aatatttttc agggagtttc tccctaatta tttgcaacgc agcttcttta
2251 gaacctgcgt ttagggcctc tgcggctgcg tcattagcag tctgctgacc
2301 tcctctagca gatccgccgt cgacctggaa ttcaccccag gtgatggtat
2351 ccccgtcctt atcaacgtag gacttgacat cggacgatga tttagctccc
2401 tggatgttgg ggtgaaagtg agccgacctt gtgggtgaca caaggtcgaa
2451 gaatctgcta tttgtgcaga cgaatttacc ttcgaactgc acaagcacat
2501 ggaggtgagg ttccccatcc tcgtgcagtt ctttggctat gtgcatgtat
2551 tttttatttg tgggggtttg gatgttaagt agttgggaga ggcagtcctc
2601 tttagagagc gaacatcgtg gataagtaat aaaatagttt tttgaagaaa
2651 ttctaaaacg tttgggcgga gccatttggt gacactcaga ctttcaaatg
2701 aattggtgac tggtgacaat ttatactatg tcaccaaatg gcatttctgt
2751 aatttagaag atccttttag ctttaattca aattccgaca actctggctc
2801 caccaaaagg cgggcaccgt attaatatt