Sequence of DPV Sida micrantha mosaic virus
Sida micrantha mosaic virus - [Brazil:okra] isolate 5157 segment DNA-B, complete sequence.
ACC No: EU908734
Dated: 2008-11-01 | Length: 2653 | CRC: 1061843362
ID EU908734; SV 1; circular; genomic DNA; STD; VRL; 2653 BP.
XX
AC EU908734;
XX
DT 17-SEP-2008 (Rel. 97, Created)
DT 01-NOV-2008 (Rel. 97, Last updated, Version 2)
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DE Sida micrantha mosaic virus - [Brazil:okra] isolate 5157 segment DNA-B,
DE complete sequence.
XX
KW .
XX
OS Sida micrantha mosaic virus - [Brazil:okra]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2653
RA Aranha S.A., Albuquerque L.C., Inoue-Nagata A.K.;
RT "Molecular and biological characterization of an okra begomovirus in
RT Brazil";
RL Unpublished.
XX
RN [2]
RP 1-2653
RA Aranha S.A., Albuquerque L.C., Boiteux L.S., Inoue-Nagata A.K.;
RT "First confirmed report of an okra begomovirus in Brazil";
RL Unpublished.
XX
RN [3]
RP 1-2653
RA Aranha S.A., Albuquerque L.C., Inoue-Nagata A.K.;
RT ;
RL Submitted (17-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Virology, Embrapa Vegetables, Km 9 BR 60, Brasilia, DF 70359970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2653
FT /organism="Sida micrantha mosaic virus - [Brazil:okra]"
FT /segment="DNA-B"
FT /host="okra"
FT /lab_host="Nicotiana benthamiana"
FT /isolate="5157"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /isolation_source="leaf"
FT /collected_by="Alice K Inoue-Nagata"
FT /collection_date="Apr-2007"
FT /clone="1"
FT /db_xref="taxon:555980"
FT gene 547. .1317
FT /gene="BV1"
FT CDS 547. .1317
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /note="NSP"
FT /protein_id="ACH48032.1"
FT /translation="MFPSRYRRGWSSNQRRGYSRNPVFKRSYGLKRSDVKRRPSNPNKA
FT QEDGKMSTQRIHENQFGPEFVMGHNSAISTFITYPTLGKALPNRSRSYIKLRRLRFKGT
FT VKIERAHADVNMDGSNPKVEGVFSLVVVVDRKPHLGSSGALLTFDELFGARIHSHGNLA
FT ISPSLKDRFYIRHVFKRVLSVEKDTTMVDLEGTTTLSNRRFSCWSSFKDVDRESCNGVY
FT ANISKNALLVYYCWMSDNMSKASTFVSFDLDYVG"
FT gene complement(1397. .2278)
FT /gene="BC1"
FT CDS complement(1397. .2278)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /note="MP"
FT /protein_id="ACH48033.1"
FT /translation="MESQLVNPPNAFNYIESQRDEYQLSHDLTEILLQFPSTASQLSAR
FT LSRSCMKIDHCVIEYRQQVPINAVGSVVVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFTEKDIDFSHVGYGKWERKMIRSASISGVGLHSPIEIRPGESWAVRSTVGINHSDAD
FT SDIENATHPYRQLHRLGTSSLDPGDSASIVGAQRAQSNITMSMAQLNELVRATAQECIN
FT SNCTPSQPKSLH"
XX
SQ Sequence 2653 BP; 645 A; 563 C; 669 G; 776 T; 0 other;
eu908734 Length: 2653 01-NOV-2008 Type: N Check: 8541 ..
1 accggatggc cgcgcgattt tgcccccccc ctacgtggcg cgctggtgcc
51 cgttggatac cgctctccct ggtggtcccc cttccctggt gctactcccc
101 cctcccccgg ctcaattcaa ttgagcgcta ttttggagtc cgcgaaatga
151 gttaaccgca ttttttgacg tccgccttcc gtcagcgcct ttaattcgaa
201 ttaaaggcat ttcatttatt gtgtccaatc attttgcttg ggttgtctcc
251 tcgcgcgacg atcgcttttg cccaactgga tgagatgcga tcttgatcgt
301 tggataataa tatattttat gcagcctctt taatttgaaa tttgaattat
351 tggcgagcgt cgtgctacca tgtcccatcg tacgaacttg atgagctgga
401 ccagttaagt tgcacctaca gagttaattt gatcaaggaa tttatgttta
451 aattccctgt tgacagatgg tgatatcagg ttaattgtcc acgtctattg
501 tttgagtagc tacagttaac gtttgtgtac tagtcagttt gataacatgt
551 ttcccagtag gtatagacgt ggttggtcgt ccaatcaacg acgtggttat
601 tcacgtaatc ctgtgtttaa gcgttcttac ggacttaaac gaagtgatgt
651 caagcgacga cccagtaatc ctaacaaagc ccaagaggac ggcaagatgt
701 ctactcaacg tatacacgag aaccagtttg ggcctgaatt tgtgatgggt
751 cataattcag ccatttcgac cttcataaca taccctactc ttgggaaggc
801 tctccctaac cggtccaggt catatatcaa gttaagacga ctgcgtttta
851 agggtactgt caagattgag cgtgcacatg ctgacgtcaa catggatggg
901 tcgaacccaa aggtggaagg agtcttctct ctcgttgttg ttgtggatcg
951 taaacctcat ttgggctcat ctggagccct gctgaccttt gatgagttat
1001 tcggagctag gatccacagc catggtaatc tggcgatatc gccgtctctc
1051 aaggatcggt tctacataag acacgtgttc aaacgtgtgt tgtccgttga
1101 gaaggatacg acgatggtgg acctggaagg gacgacgact ctttcgaaca
1151 gacgttttag ttgttggtca tcgtttaagg acgttgaccg tgaatcgtgt
1201 aatggcgtct atgcgaacat aagcaagaac gcccttttag tttattactg
1251 ttggatgtcg gataatatgt ccaaggcatc gacatttgta tcgtttgacc
1301 tcgattatgt tgggtaaatt ggaaatttaa tacaagctta atgcaaagaa
1351 ccttatttat atttattaat aagtagacac gttcttcaca ataatctcag
1401 tgcaatgatt tgggctgaga aggggtacag ttgctgttga tacattcctg
1451 ggccgtagcc cgaactagtt cgtttagttg ggccattgac atggttatgt
1501 tggattgggc cctctgagca cccactattg aggccgagtc tccagggtct
1551 aggctactgg ttcccagcct gtgcagctgc ctgtatgggt gcgttgcgtt
1601 ctctatatcg gagtctgcgt ctgagtgatt gattcctaca gtgcttctga
1651 cagcccagga ctctccaggc ctgatttcaa ttgggctgtg cagcccaaca
1701 cccgatatgg acgcagatct gatcatcttc ctctcccact ttccgtagcc
1751 cacgtggctg aagtcgatgt ctttctctgt aaattgcttg gagaggatct
1801 tcactgttgg ggcacggaaa ggtatgtcta cagagtgttt cgccgtcgac
1851 aacttcagct ttcccttgaa tttcgcgaag tgggtcctct gatggacgtt
1901 agtgtcgcac actctgtagt acaatttcca tggaattggg tccttgaggg
1951 agaagaatga cgaggaaaag taatggaggt cgatgttgca tcgtatcgga
2001 aacgtccagg acgcttgcag cgactcgttg tcagtcattc tcttgtcatg
2051 gatctccacg acgacggaac ccacggcgtt aatgggtact tgctgtctgt
2101 attctatgac gcagtggtct attttcatac aactgcgact gagccgggcg
2151 cttaattggg acgccgtgga gggaaattga agaagaatct ctgtcaggtc
2201 atgagaaagc tgatattcat cacgctgaga ctcaatgtaa ttgaatgcgt
2251 ttggaggatt cactagctga gattccatta cttttaatta tcagaaatag
2301 gccgcgcagc ggaaacgaca gcgagatttg agcaggtgaa actaacaggt
2351 ctgaaagact ctagggttta tgttgattat gaaagagtaa agtggagaag
2401 atgataatga agacgagttg ggttgggctg ttactggacg gattgagagg
2451 agatattgtc caattgaggt gtttcattta acaactcgtc tgattcctcc
2501 ttaaatagaa gatgagtacg gagtggcata tttgtaaata aggggggaac
2551 cccgattgag agctcgctct ataagtcata tgtattgggg taaaggggac
2601 aatatatagt agaagatcct aagggccttt aagcggccat ccgcactaat
2651 att