Sequence of DPV Morogoro virus
Morogoro virus strain 3017/2004 segment L Z protein (Z) and polymerase (L) genes, complete cds.
ACC No: EU914104
Dated: 2009-07-31 | Length: 7207 | CRC: 2050652530
ID EU914104; SV 1; linear; genomic RNA; STD; VRL; 7207 BP.
XX
AC EU914104;
XX
DT 31-JUL-2009 (Rel. 101, Created)
DT 31-JUL-2009 (Rel. 101, Last updated, Version 1)
XX
DE Morogoro virus strain 3017/2004 segment L Z protein (Z) and polymerase (L)
DE genes, complete cds.
XX
KW .
XX
OS Morogoro virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC Old world arenaviruses; unclassified Old world arenaviruses.
XX
RN [1]
RP 1-7207
RA Gunther S., Leirs H.;
RT "A Mopeia-related arenavirus in Mastomys natalensis in Morogoro, Tanzania";
RL Unpublished.
XX
RN [2]
RP 1-7207
RA Gunther S., Leirs H.;
RT ;
RL Submitted (20-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Virology, Bernhard-Nocht-Institute for Tropical Medicine,
RL Bernhard-Nocht-Str. 74, Hamburg 20359, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .7207
FT /organism="Morogoro virus"
FT /segment="L"
FT /host="Mastomys natalensis"
FT /strain="3017/2004"
FT /mol_type="genomic RNA"
FT /country="Tanzania:Morogoro"
FT /collection_date="2004"
FT /db_xref="taxon:573900"
FT gene 57. .368
FT /gene="Z"
FT CDS 57. .368
FT /codon_start=1
FT /gene="Z"
FT /product="Z protein"
FT /protein_id="ACJ24975.1"
FT /translation="MGKSQSKATLRERESSPRENRQPIIPDARGTGPEFCKSCWFERRG
FT LVRCHDHYLCLNCLTLLLTVSNRCPLCKHSLPQRLELHPQPTAPPEAMPSQQPPPYQP"
FT gene complement(463. .7161)
FT /gene="L"
FT CDS complement(463. .7161)
FT /codon_start=1
FT /gene="L"
FT /product="polymerase"
FT /note="L protein"
FT /protein_id="ACJ24976.1"
FT /translation="MEELLGECKDLISKYLAGDERLSQQKLAFLVQTEPKMLLIEGLKL
FT LSLCIEIDSCQANGCEHNTESLSVELILQKKGVLCPGLAFVVPDGFKFSGNTLILLECF
FT VRTSPTNFEQKYREDMVKLEALKSDLNSVDIVLLPLIDGRTSFHTELFPEWANEKFRNN
FT LFSLLEYSQQSSRMFEESEYSRLCESLTKTGVRTSGIESLNILSDSRADHHERLLQLCH
FT RGLNNRMTPLEVRKEIILEYQAFRNKLREESIPRQFVKTDRIKLLDDFNTLYVDREGDG
FT PHNLNVLRERFIWSSPIVTALYGDYGSVHLGEGGDLPTSSCVAGWKSLLNKIKSLKLLN
FT TRRKLLLTFDTIILLAHLRDEKQLGSMVSSEWLGSSFLSVNDRLVSLEATQRELKNWLS
FT RRRDNIVKKGHPQPQNLSMCFYDIIKKLLTRAEEMLKVVNLSFCDYVTETDILERESFE
FT KLIHLERRGVQPTMSYERLCERDFPYPLLDIDSQGQNDLKRLSSISLALVNSMKTSSVA
FT KVRQNEHGAARYKKVRCKEAFNQSFVMGEKRFNLIYQKTGEGSKCYAINNSERGEVCSF
FT YADPKRFFPAIFSQDVISKVLDAMSSWLSDCVELKEQEASLKLLLKMVIILILANPSKR
FT AQKFLQGLRYFIMAFVSDYHHKQLMEKLREDLITDSEYLLYSVVRTIFSIVLDNKVTTM
FT LTNRFKYVLNLSYMCHFITKETPDRLTDQIKCFEKYLEPKLEFDSLNVNPKESGDEEEK
FT LLLLNSAEKFLSKPDCLTGDTISYKQPGVSRKLFSMMTSSFNNGSLTKGGDLKGGFKDP
FT LVTAGCATALDLASNKSVVVNKYSDGERVLNYDHDKLVATSVCQLSEVFERKTKYLLNK
FT EDYDYKVQKTLTDLVIGTKKDKQGGGKSGEVEQLDEVLLSSDALGCLEEVKESIDTVLN
FT RYKFDRALDDKKEHIEGEHKSLTDLKKVMEVKGFHSTHYNLIQAEITHHTIEDFDESVL
FT PNGSYQLISEGFYENLDLRNRYFYLDSLESCPIRCITQAVSTRTLNEGQYFQCFKSLLL
FT QMNAGRLTGKYSHYKNKCLNFKIDRERLMSDVRISERESNSEALGKALSLTNCTTAVLK
FT NLCFYSQESPQSYTSLGPDTGRLKFSLSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEA
FT LTKQYKGSCLNDENEFSNAILAMKLNVSLAQVSYSLDHSKWGPMMSPFLFLVFLQNLHW
FT ETQDDLGDIKSKDHISTLLSWHIHKLIEVPFNVVNAMMKSYLKSRLGLKRTFHETITES
FT FFFESFRVDEVPSHLSSIIDMGQGILHNTSDFYGLISERFINYCIKCLFEEGVESFTSS
FT DDQITLFGKGLTELMGSDSEEFQNILEFHYYLSDRLNKFISPKSVVGTFVAEFKSRFYV
FT WGDEVPLLTKFVAAALHNVKCKDPHQLAETIDTILDQSIANGVPVSICNALQVRTIDVL
FT KYAQYPIDPFLMFLNSDVKDWVDGBRGYRIMRNIEGILPRGTEKVRKILRVVFNKLKTG
FT ELHEEFTAIYLSGDPVESFTKLSELIGESELQKDDLSVCWLNLTAHHPLRMVMRQKVLY
FT TGAISVEDEKLPTLVKTLQSKLSSGFTRGAQKLLCEAVNKSAFQSSIASGFVGLCKTLG
FT SKCVRYLDKTTTYIRSLISRLSEIQGVKKLKLGGVDLWDTRELTDSIPEDLAGYLRPVL
FT WDYFCISLSTSLELGPWVLGEPKIKSKKPNINFNPCDYFPMKPTHTRLLEDKVGFNHII
FT HSFRRLYPSIYEKHLLPFMSDLASTKMKWTPRIKFLDLCVVLDVNCEAMSLISHVVKWK
FT REEHYIVLSSDLAVAHDRTHLPLTDERVVTTYDVVQNFMRQVYFESFVRPFVATSRTLG
FT SFTWFPHKSSLPESEGLGLLGPFSSFVEKVIYKGIERPMYKNDLHSGYAWLDFECSPAV
FT VNLSQLIACGLTQQKICREPEELFDLLSEVSTGGVQITLTINFQVKSQGESLSEKFSIH
FT LLWKGEILEGGVFKPYSLEGMYSGKVHRSALVDCWRLAQTSSWFKRDCRSMWQLSTENL
FT CEYLADSHSIPDAIPLPVFLEGEIMCLDVYDFNHVGPDYDDIPLVVDSGYLLEGTRKLI
FT PFNPKIFDQDLRVFIGELSEDHRDVLIDSLSRMIKSRVEQSLHWLQVDIVGVVEETMPG
FT SHADFLNEVMSRTDGWVDFKGYSLCFSKSLGKVMVQSSEGTLRLKGRLCRSLHDNPPPP
FT EDID"
XX
SQ Sequence 7207 BP; 2041 A; 1702 C; 1319 G; 2143 T; 2 other;
eu914104 Length: 7207 31-JUL-2009 Type: N Check: 2796 ..
1 aattctgaca cccataacat tgtgttttca acaagcacaa gccgaggaca
51 gccaacatgg ggaagtccca atccaaggcc accctcagag agagggagtc
101 aagtccaaga gagaataggc agcctataat accagatgca agagggactg
151 ggccagaatt ttgcaaaagc tgctggtttg agaggagagg ccttgtgaga
201 tgtcatgacc attacctctg tctaaattgt ctcacactgc tactcacagt
251 atccaacaga tgccctcttt gcaaacacag cctgccccaa aggctggagc
301 ttcacccaca gcccacagca ccccccgagg caatgcccag ccagcaaccc
351 cccccatacc agccctgaac accccgaaag caccccagac agccccaccc
401 ctcccccccc ggggggaacc cccgccgggg ctccccccgg gggagcgaag
451 agcgcgcggg catcagtcaa tgtcctccgg aggaggtggg ttgtcatgca
501 gggatctgca caatctgccc ttcagcctga gtgttccctc tgagctttgg
551 accatcacct tccccaacga tttactaaaa cacaaactgt accctttgaa
601 atcaacccaa ccgtctgtcc ttgacatcac ctcattgagg aaatctgcat
651 gactcccagg cattgtttcc tccacaaccc cgactatgtc cacctgcagc
701 cagtgaagag actgctccac ccttgattta atcattcttg acagagagtc
751 aatcaacaca tcccggtgat cctctgagag ctctcctatg aaaactctca
801 aatcctggtc aaaaatcttg gggttgaagg ggatcaactt tcttgtcccc
851 tcaaggagat aacctgaatc aaccacgaga ggtatgtcat catagtctgg
901 cccaacatga ttgaaatcat acacatccaa acacattatc tccccctcca
951 ggaatactgg caatgggata gcatcaggaa tcgagtggct gtcagctaaa
1001 tattcacaca ggttttctgt ggatagttgc cacatacttc tgcagtctct
1051 cttgaaccaa gatgaggtct gagctagcct ccaacaatct accagggctg
1101 atctgtgaac tttgccacta tacatgcctt ccagtgagta gggcttaaaa
1151 acacccccct ccaggatttc gcctttccac aagaggtgaa tggagaattt
1201 ctcagacagt gactcccctt ggctcttaac ctgaaagtta atcgttaatg
1251 taatctgcac accaccagtg ctcacctcag agaggagatc gaatagctct
1301 tcaggctcac gacaaatttt ttgctgtgtt aaaccacatg ctatgagttg
1351 acttagattg accacagcag gagaacattc aaagtccaac catgcatagc
1401 cagaatgaag atcattttta tacattggtc gttcaattcc tttgtaaatg
1451 actttttcta caaaagatga gaagggtccc aacagcccta aaccttcgga
1501 ctcaggcaat gaggacttgt gtgggaacca agtgaatgaa cccaatgtcc
1551 tacttgttgc cacaaatggc cttacgaaag actcaaaata cacttgcctc
1601 atgaaatttt gaacaacatc ataagtcgtc actactctct catctgtgag
1651 gggcaaatgc gttctatcat gagccacagc caaatcagaa gataaaacaa
1701 tatagtgttc ttctctcttc catttaacta catgtgatat taatgacata
1751 gcttcgcaat ttacatcaag caccacacat agatctagga attttatcct
1801 tggagtccat ttcatctttg tggatgctaa atcactcata aatgggagta
1851 gatgtttttc ataaattgat gggtaaagtc ttctgaagga gtggattata
1901 tggttgaatc ccaccttgtc ttcaagaagc cttgtgtggg ttggcttcat
1951 gggaaaataa tcacatggat tgaaatttat attaggcttt ttacttttta
2001 tcttaggctc ccccaaaacc catgggccca attcaagaga agtggatagt
2051 gagatacaaa aatagtccca taatactggc cttaagtaac ctgctaaatc
2101 ctcggggata ctgtctgtaa gctcccttgt gtcccacaag tccacccctc
2151 ctagcttgag ctttttgacc ccctggatct cagacaatct agaaatcaat
2201 gaccttatgt atgtggtggt tttatctaga tacctgacac acttactccc
2251 tagagtcttg cacaggccca caaaaccaga tgcaatagag ctttgaaatg
2301 cacttttgtt gacagcctcg cataacagct tttgtgctcc tcttgtgaag
2351 cctgatgaaa gtttactctg taatgtcttc actaaagttg gtagtttttc
2401 gtcttcaaca ctgatggctc ctgtgtatag cactttttgt ctcatgacca
2451 tccgtaatgg atggtgtgca gtcaagttta accagcaaac ggataaatca
2501 tccttttgaa gttcagattc acctatgagt tcgcttagtt tagtgaatga
2551 ttccactggg tcaccagaca agtaaatagc tgtgaattct tcgtgtaatt
2601 cacctgtctt tagcttatta aataccactc tgagaatctt ccttaccttc
2651 tcagtacctc ttggtagtat gccctcaatg ttcctcataa ttctgtaccc
2701 tctgtygcca tcaacccagt ctttaacatc tgagttcaga aacattaaaa
2751 agggatctat gggatactga gcatatttta aaacatctat tgttcgcacc
2801 tgtagagcat tacatataga aacaggcaca ccatttgcta ttgactgatc
2851 cagaattgta tcaatcgtct cagcgagctg atgggggtct ttgcatttta
2901 cgttgtgaag agcagcagca acgaatttgg ttaaaagggg tacttcatca
2951 ccccaaacat aaaatctaga tttgaactca gcaacaaagg tccctaccac
3001 actcttagga cttatgaatt tgttaagcct gtcacttaaa tagtagtgaa
3051 actctaagat gttttgaaat tcctcggaat cacttcccat tagttccgtc
3101 agccccttgc caaagagggt tatttgatca tcacttgatg tgaaggattc
3151 aacaccctct tcaaacaagc actttatgca gtaatttatg aatctctcac
3201 taatcaaccc ataaaaatct gaggtattgt gcaatatgcc ctgacccatg
3251 tcaataatgg aactcagatg tgatggtacc tcatcaactc taaagctctc
3301 gaagaagaag gactctgtga ttgtctcatg aaaagttctc ttcaaaccta
3351 acctagattt gaggtaggac ttcatcattg cattgacaac attgaaagga
3401 acttcaatca atttgtgaat gtgccaagat aacaaagtac taatatggtc
3451 tttgctttta atgtctccaa ggtcatcttg tgtttcccag tgcaggttct
3501 gtaaaaacac caagaataga aatggggaca tcattgggcc ccacttacta
3551 tggtctaaac tatatgaaac ctgagccagt gagacattga gcttcattgc
3601 cagaatggca ttgctaaact cattctcatc atttaagcaa ctccccttgt
3651 attgcttagt caatgcctca aaataatctt ctatcagtct ggtgaacatc
3701 ttggtcctga ggtcccctat ataaagctct ctatttcccc caacttgctc
3751 tttgtaggac aatgagaact ttaacctccc agtatcaggt cccaacgatg
3801 tgtaagattg tggtgactct tggctgtaaa agcataaatt ctttagcact
3851 gctgttgtgc aattagttag tgagagtgct ttcccaagtg cttctgaatt
3901 actctctctc tcactaatcc taacatcact catcaacctc tctctgtcaa
3951 ttttgaaatt cagacacttg ttcttataat gagaatactt gccagttaat
4001 cttccagcat tcatctgtag taatagagat ttaaaacatt gaaagtactg
4051 accttcattg agtgtcctag ttgacacagc ctgggtaata catctgatag
4101 gacaagattc cagagaatca agatagaaat acctattcct caaatctaga
4151 ttttcataaa acccttctga gatcagttgg taagacccat tgggcaaaac
4201 tgattcatca aagtcctcta tagtatgatg ggttatctca gcctgaatta
4251 aattgtaatg ggtgctgtga aatcctttga cctccataac tttcttcaaa
4301 tcagttagtg atttatgttc tccttctata tgttccttct tgtcatctaa
4351 ggctcgatca aatttgtacc tgttcagtac agtgtcaatt gattctttaa
4401 cctcttcaag gcaccctaat gcatcactac tcagtaagac ttcatctagc
4451 tgctcaactt caccactctt accacctccc tgcttatcct tcttggttcc
4501 aatcaccaaa tcagtgaggg ttttctgaac tttgtagtca taatcttctt
4551 tattaagtaa gtactttgtt ttcctctcaa acacttcaga cagttggcaa
4601 acagaggtgg ctactaattt gtcatggtcg taattcaata ccctctcacc
4651 atctgaatac ttatttacaa ccacactctt attgctggca aggtctaatg
4701 ctgttgcaca cccagcggtg accaaggggt ctttgaaccc acctttgaga
4751 tctcctcctt ttgtcaatga tccattgttg aatgaggagg tcatcattga
4801 gaataatttt ctagacacac ccggttgttt ataggagatt gtatcacctg
4851 ttagacaatc cggtttagag aggaacttct cagcggagtt taacaacaag
4901 agtttttctt cttcatctcc tgattcctta ggattcacat tcaagctgtc
4951 aaactctaac ttaggctcta aatacttctc aaaacacttg atttggtctg
5001 tcaatctatc cggagtttct ttggtgatga agtggcacat atatgaaagg
5051 tttaaaacat atttaaacct atttgttagc atagttgtca ccttgttgtc
5101 gagaacaatt gagaaaatag ttctaactac actatagaga aggtattcag
5151 aatcagttat cagatcctcc ctcaacttct ccattagctg cttgtggtga
5201 tagtctgaca caaaagccat tatgaagtac ctcaaacctt gcaaaaactt
5251 ttgagccctt ttgctagggt tggctaaaat gaggattatg accattttta
5301 ataacaattt caagcttgct tcctgctctt ttagttcaac acaatcagaa
5351 agccagcttg acatggcatc cagtaccttg gatatcacat cttgtgaaaa
5401 aatggctggg aagaatcttt taggatctgc ataaaatgaa caaacttctc
5451 cacgctcaga gttgttgatg gcgtaacatt tagaaccttc accggtcttt
5501 tgataaatga gattaaaacg cttttctccc ataacaaaac tttgattaaa
5551 ggcctcttta catctgactt tcttgtacct agctgcaccg tgctcattct
5601 gtctaacttt tgcaacagaa gatgttttca tcgagttcac caatgccaga
5651 gagatactcg aaagtctttt taagtcgttc tgaccctggg agtcaatatc
5701 aagtagtgga tatgggaagt ccctttcaca aagtctttca taactcatcg
5751 tgggctgaac ccccctcctc tctaggtgaa tcagtttttc aaagctctct
5801 ctttccaaga tgtcagtctc agttacataa tcgcaaaaac tcaaattcac
5851 cacctttagc atttcctctg ccctggttaa gagtttctta atgatgtcat
5901 agaagcacat actcaaattc tgaggctgtg gatggccttt ctttactatg
5951 ttatcccttc tcctgctcaa ccagttcttc aattccctct gagtagcctc
6001 aagtgacacc aacctatcat taacacttag aaaagaagat cccaaccact
6051 cggagctaac catgctcccg agttgtttct catcccttaa gtgggctaag
6101 agtattatgg tatcaaaggt tagtagaagc tttctcctag tgttcaatag
6151 tttgagggat ttaatcttat tgaggagaga tttccagcca gcaacacaac
6201 tggaagttgg caagtcccca ccctcaccta ggtgaacaga rccataatca
6251 ccatacaatg ctgttacaat tggagaggac cagataaatc tttcccttag
6301 cacgtttaaa ttgtgaggac catcaccttc tctatctaca taaagggtgt
6351 taaaatcatc tagaagctta attctgtctg ttttaacaaa ctgtctgggg
6401 atgctttcct ctctgagttt atttctgaat gcttggtatt ccagaatgat
6451 ttcttttcga acctcaagtg gtgtcattct gttattcaac cccctgtgac
6501 acagttgcag caacctttca tgatgatctg ctctagaatc tgataaaatg
6551 ttaaggctct caatcccaga tgttctgact cccgtctttg tcaaggactc
6601 acacaacctt gagtactctg actcttcaaa catcctagat gattgttgag
6651 aatactcaag cagagagaat aaattatttc taaacttttc attagcccac
6701 tcgggaaata attctgtgtg gaagctggtt ctaccatcta tgaggggtag
6751 tagcactatg tcgacagaat taaggtcaga tttcaatgcc tcaagcttca
6801 ccatgtcttc tctatatttt tgctcaaaat tggtgggaga tgttcttaca
6851 aaacattcaa gcaagattaa tgtgttgcct gaaaacttga atccatcagg
6901 aaccacgaaa gctaagccag ggcataggac ccctttcttc tgtagtatga
6951 gctccactga cagggactct gtgttatgtt cacatccgtt ggcttgacag
7001 ctatctatct caatgcagag ggacaaaagc ttcagtccct ctatgagaag
7051 catttttggc tcagtttgca caagaaatgc taacttttgt tgagagagtc
7101 tttcatcacc tgccaagtat ttgcttatca agtccttaca ttctcctaaa
7151 agctcttcca ttgctgatgt tctcacacac cagtaacata tgtaatgaga
7201 gtcaaat