Sequence of DPV Rice stripe virus
Rice stripe virus isolate YCX07 segment RNA4, complete sequence.
ACC No: EU931497
Dated: 2008-08-11 | Length: 2233 | CRC: 930839981
ID EU931497; SV 1; linear; genomic RNA; STD; VRL; 2233 BP.
XX
AC EU931497;
XX
DT 11-AUG-2008 (Rel. 96, Created)
DT 11-AUG-2008 (Rel. 96, Last updated, Version 1)
XX
DE Rice stripe virus isolate YCX07 segment RNA4, complete sequence.
XX
KW .
XX
OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-2233
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT "Molecular Variability of RNA4 of Rice Stripe Virus in China";
RL Unpublished.
XX
RN [2]
RP 1-2233
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT ;
RL Submitted (27-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Virology, Fujian Agriculture and Forestry University,
RL Jinshan, Fuzhou, Fujian 350002, China
XX
CC GenBank Accession Numbers EU931494-EU931497 represent sequences
CC from the 4 segments of Rice stripe virus isolate YCX07.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2233
FT /organism="Rice stripe virus"
FT /segment="RNA4"
FT /specific_host="Oryza sativa (rice)"
FT /isolate="YCX07"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="infected leaves"
FT /collection_date="Jul-2007"
FT /db_xref="taxon:12331"
FT CDS 55. .591
FT /codon_start=1
FT /product="SP protein"
FT /protein_id="ACG58327.1"
FT /translation="MQDVLRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT GLFFNILQPSLGGWITKNFLRHPNRMSKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKM
FT PTYFESIIQPLLHKT"
FT CDS complement(1322. .2182)
FT /codon_start=1
FT /product="NSvc4 protein"
FT /protein_id="ACG58328.1"
FT /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT HYPFFRVATFAMVWIGIKGRASGVTTLRIIDKSYVNPSDQVEVEVRYPISKNFAVLGSL
FT ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTSDTVMFEFEPL
FT EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT VSVIM"
XX
SQ Sequence 2233 BP; 719 A; 464 C; 421 G; 629 T; 0 other;
eu931497 Length: 2233 11-AUG-2008 Type: N Check: 4368 ..
1 acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcagaatc
51 gaagatgcaa gacgtactaa ggacaataga agtttctgtt ggtcctattg
101 taggcctaga ttacactctg ttgtatgaca ctctgcccga gactgtgagc
151 gataatatta ctctacctga tttgaaagat ccagagagag tcacggaaga
201 tactaagaag ctaatactca aaggctgtgt ttatatagca tatcatcacc
251 ccttggagac tgacactctc ttcattaaag ttcacaagca tataccagag
301 ttttgtcact ccttcctatc acaccttcta ggaggtgaag atgatgacaa
351 tgctctgata gacattggcc tgttcttcaa catcttgcaa ccctctctgg
401 gcggttggat aaccaagaat tttcttagac acccaaacag gatgtctaag
451 gaccaaatta aaatgctcct ggatcagatt ataaagatgg ctaaggcaga
501 gagctcagac acagaagagt atgagaaagt gtggaagaag atgccaactt
551 attttgagtc aatcatccaa cctcttttac acaaaacata gtttattgca
601 aatcatgtag tctcacctac gagtgcttgc attctaggag tgaagccagt
651 ttgggttgac ctgctagtat aaaaatataa gtatattata gtttaagaga
701 catacacgat gtttgtccac ttgagcttag cagtttgcaa gtaattgtgt
751 gtaattgtgc ataaatatat atatgtcagt atataactat acataggtgt
801 gcagatgtaa acacttgaaa caaatataca cctatcaact tatatacacg
851 cttgtaagtc ttggtttttc tttacacaaa aatagaaaca taagagtatc
901 aattagaact gccttggtgt cataagcaca gatatagctg tgtggaaaga
951 acactcaagg ctaagaattc tctaacatcg ctttatacaa aaaccattat
1001 aaaaatacta acaactttgt tttcacaatg tcaacgctaa aaactgaaat
1051 gccaaaaaca tgaaaaatag aaagtcaaaa acaatgaatg gtgctaagca
1101 ccacatccgg atgtggtgcg tagctccatt ttcatagtat tgatctataa
1151 cctacttgta gcataaacac ccacatgcat gaagtgcata gcactctctt
1201 atgaattgcc tactatgatc acatgaatgc atagcatcct catgggaaag
1251 atcagagcag aacagaccac atcagatgct tagcaccaga tgttagcata
1301 ccctggagct agttatctca cttacatgat gacagaaact tcagattttg
1351 atttctttgt gatgggtatc ttctttggct gcttcaccac accgaactcc
1401 ttttcagtgt ctagctcagg gaagctcttg ctggtgaaag caccgccaac
1451 agctttctga acgacattag tcgtgaaatt actgaagcta gacaaatgat
1501 ttattgcctt gtcttctagt ggttcaaact caaacatcac ggtgtcactg
1551 gtcttcatgg atactggcag atcagttctt tcaatccccc agaaccaaag
1601 agttctagag atgacacagt tctgcactga gctgtcatca acagacacag
1651 acacctgaag attatgctta tcctccaaag ccagaaaatt cgctagagaa
1701 cccaagacgg caaaattctt gctaatcggg tagcgaacct ctacctcaac
1751 ttgatcagag gggttcacat aggacttgtc tattatgcgg agagtagtta
1801 ctccactagc tctaccttta attccaatcc aaaccatagc aaaagtagcc
1851 actctgaaga atggataatg agtgagaggt tgatgaaacc aatatgggtc
1901 aacaagtatg ttgaaagtag ccttcctatg tgccttcaca gaatagtcct
1951 gtttggctat gaacatatca tacttgttca ccttgacatc tgagaagctg
2001 aaaggctcca atccgagcat tgtagcagcc tggtcaattg tgaccctacc
2051 ctggttcaga ggtctcttgg agagagctag agatttccta ttcttattat
2101 caactctctt ttgagactcc tcactaaggt catcatagag taccttactt
2151 tttgaagtgg acaaaagtcg agacaaagcc ataattaaat tatatattag
2201 cttaatcaca aaagatatgc cctgactttg tgt