Sequence of DPV Rice stripe virus
Rice stripe virus isolate YQJ07 segment RNA2, complete sequence.
ACC No: EU931503
Dated: 2008-08-11 | Length: 3514 | CRC: -1723680266
ID EU931503; SV 1; linear; genomic RNA; STD; VRL; 3514 BP.
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AC EU931503;
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DT 11-AUG-2008 (Rel. 96, Created)
DT 11-AUG-2008 (Rel. 96, Last updated, Version 1)
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DE Rice stripe virus isolate YQJ07 segment RNA2, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-3514
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT "Molecular Variability of RNA2 of Rice Stripe Virus in China";
RL Unpublished.
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RN [2]
RP 1-3514
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT ;
RL Submitted (28-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Virology, Fujian Agriculture and Forestry University,
RL Jinshan, Fuzhou, Fujian 350002, China
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CC GenBank Accession Numbers EU931502-EU931505 represent sequences
CC from the 4 segments of Rice stripe virus isolate YQJ07.
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FH Key Location/Qualifiers
FH
FT source 1. .3514
FT /organism="Rice stripe virus"
FT /segment="RNA2"
FT /specific_host="Oryza sativa (rice)"
FT /isolate="YQJ07"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="infected leaves"
FT /collection_date="Jul-2007"
FT /db_xref="taxon:12331"
FT CDS 81. .686
FT /codon_start=1
FT /product="mutant NS2 protein"
FT /protein_id="ACG58337.1"
FT /translation="MAVLLFNDHYYSFLHKYKRHTGSYDNLFNLRCSKEDYYLNSLDAI
FT WFMGCCEEFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL
FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMVHKHIVV
FT TNGIPISKNFNEIALPETSLSDDYVLVGAHECPILLRD"
FT CDS complement(980. .3484)
FT /codon_start=1
FT /product="NSvc2 protein"
FT /protein_id="ACG58338.1"
FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC
FT SARAPPCKLTYDLNGYFIENGLICYNRASVNYFETCYTGSYDYKLPLHPSFSKFGGHVY
FT LSCDDAILQNVSLIGIQQTEYTSSPLLITTSNSEKISYSNLRTGFLGMVYAVETRACIQ
FT PDQAKKPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI
FT EVCDKGGCHNVTCHPGEICDKYERMDIIMRIKNYQCSHIYRYSLYSIILFFVIVIVFTL
FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPAVDEVSIDMSTVRVVDEVEEGLLVVED
FT SIAPNTNVSDKVRRKGRKVENGLIFIPYVLMILLLVCSAESCQDLVSSISNIERCTNNS
FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK
FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI
FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYTECDGKA
FT YLRTANDLGSFDKELLGNIQCPTKDDAVVLSSKCKTKILSNEDLPVIRYIERDGVDMLE
FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER
FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVSVGSMVKCKF
FT IYSGDTIMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS
FT IIPIGLILKTIRSFLDDIRQVD"
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SQ Sequence 3514 BP; 1071 A; 744 C; 638 G; 1061 T; 0 other;
eu931503 Length: 3514 11-AUG-2008 Type: N Check: 8683 ..
1 acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga
51 aatcgtccac ggagaatctc gttctcagca atggcagtac ttcttttcaa
101 tgatcactac tatagttttc tccataagta caaaagacat actggatcat
151 atgataatct cttcaatttg aggtgctcta aagaagacta ctatttgaac
201 tctcttgatg ctatctggtt catgggatgc tgtgaggagt ttacagaccc
251 agctcttaga gcacatgctc tcgccatagc aactgaatca aacataggtt
301 tggttaacaa caatgctgtg atatctgatg agaggctgaa gtgctggctc
351 tgtaaaaaac catctcatca acagacggag catttgaaac tgattctgtt
401 gcccaacttg gtcaatgggt ttcagtttgc aacagagtca tatcacatat
451 gcctgaagga tcactctgga gatgacccca cacaatatct tagtgaattc
501 tcttttccca ctggattaag agcctactac aagccacatc agaagatggt
551 gcacaagcac atagttgtga ccaatggaat acccatctca aagaatttca
601 atgaaattgc tctccctgaa acatctctta gtgatgacta tgtcttggtt
651 ggagcacatg agtgtcctat tctactgaga gattagtaaa taatattgac
701 tgcagcctat gggcacatac acacacaggc cacgaacact acaatggtgc
751 tatgcatcaa tctataatct tatatcctcg aaatggtgct acgcaccaca
801 tccggatggt gagcctagct cactttgggt attgagtaaa ttagtgaaaa
851 caaacaagtg taattataac tataatagct ttcttattac tatatgacta
901 gcaatctagt aactatatac ttaagctaaa gtaaagatta ctaatagaaa
951 catggacata catgagtgga cctatcaact taatcaacct gtctgatgtc
1001 atctagaaaa ctcctaatgg tctttaaaat gagtcctatt ggtattattg
1051 aagccactag agacaacttt gggttatcct tgactatccc agccagtaac
1101 tccatccagt tggttgtgct ggtcttcaca gcctcaaaag agctcacatc
1151 taagctcggt gatatcacgg tgatctctaa tggtgaaaca tcatacttgc
1201 acataatagt atcaccagag tatatgaatt tgcatttgac catggaacca
1251 actgagacag aatagtaagt tgttgtaatg catgtacctt ttttgatgtt
1301 gttcagtatc atcgggcaaa ccgccaatcc ctcgcaagcc aatatatcac
1351 tgagataaac tttgtttgaa gattctatac taaccgttgt cttcttaaat
1401 ttcctctcta ttccagtgat cttgcatgag gtcccattga gggatatctt
1451 actagttatt atgctagtga tcgcctcctt gaattgcaag ttcagctcca
1501 ctgggaatag atccaaagtg cctagagata taccagagct agagactaac
1551 acatccttta agggttcact ctttacatgc tctagcatat ccactccatc
1601 cctctctata tatctgataa ctggcaaatc ctcatttgaa agtatcttag
1651 ttttacactt actgctaagg acaacagcat catctttagt tggacactgt
1701 atgttgccaa gtaactcttt atcaaaagat cctaaatcat ttgctgttct
1751 taaataagcc ttcccatcac actctgtata ttctctgggc attctggcac
1801 tattgtagtt tgacaacgat atagaaacca aagggctatc atacttacta
1851 gtaatgcctc ctaattcttt taaaacatgt ccattcttct gaatataccc
1901 aactatctcg aacttagtat ccatgcattt cataatggtg catgctctag
1951 aagatgttgg ttcatattct attctcttcc aattgtagtg gtatgctggg
2001 caataggaga agatgtggaa atcagtgaca caataatcga agctcagact
2051 agtggattcc ccccatattg agtgtgttcc atcagttctg caaccttccc
2101 cttcaaagca tttccattcc tctctggaga tcaccctttt gaaactgtta
2151 gtgtaataca gaggcactga caagcacatg acacgaacac tattgaatcg
2201 tatcttataa acatctgtcg atgtcttgaa gcagaaatcc tgaggagtgt
2251 ttagtagggt caatttcatc ttggagatga aatcacaact attatttgtg
2301 cacctctcta tattggaaat gcttgaaaca aggtcttgac aggattctgc
2351 agagcaaacc agtagcaaga tcatcaatac atatggtatg aatatcagcc
2401 cattctctac ttttctacct ttccttctta ctttatctga aacattagtg
2451 ttaggtgcaa tggagtcttc aacaactaat aggccctcct ctacttcatc
2501 cacgactcta actgttgaca tatctataga tacctcatct acagcaggtc
2551 ttctatggca cagtccaacc attgaatata gtaccttctt cagcaaccaa
2601 aatgcaggtt ttaggaaaaa taagatgttc attatagtga taagagtgaa
2651 cactatcact ataacaaaga acaaaattat agagtacagc gaatatctat
2701 agatgtgaga gcattgataa ttctttatcc tcattatgat gtccattctc
2751 tcatacttgt cacaaatctc tcctgggtga catgtcacat tgtgacaacc
2801 acccttatca caaacttcaa tagtatcatc ataagttggc agtttgaccg
2851 attcacaaga agggatagaa aatgtttggt cactcacatt aacctcacat
2901 gcagagttga tgtaatacag cacaccatct gtgcatgagg gcttgattgc
2951 aacaccatga tttatgattt cttctggttt cttggcttgg tcaggttgaa
3001 tacatgctct agtttcaaca gcatacacca ttcccaagaa accagttctg
3051 agatttgagt atgaaatctt ttcagaattg gaagtggtta tcaatagggg
3101 gcttgatgtg tattctgttt gctgtatgcc aatcagtgac acattctgca
3151 gaatagcatc atcacaagag agatagacgt gaccaccgaa cttagagaag
3201 gaaggatgga gaggcagctt gtaatcgtaa ctgccagtgt agcatgtctc
3251 aaagtaattc acactagccc tgttgtagca aatcagacca ttctcaataa
3301 agtatccatt tagatcataa gtcaatttgc aaggaggggc tctggcactg
3351 caagggacct tgacaatctc agatggttcc ctctccctat tcctcatcca
3401 tgaatgggtg tcagggaaag gtattggtgc accccacgcc atattaaaga
3451 ttgtggtgta gatgaaatat gatttaaaat gcatcttcga agaagttata
3501 cccagacttt gtgt