Sequence of DPV Rice stripe virus
Rice stripe virus isolate YQJ07 segment RNA3, complete sequence.
ACC No: EU931504
Dated: 2008-08-11 | Length: 2508 | CRC: 1939780602
ID EU931504; SV 1; linear; genomic RNA; STD; VRL; 2508 BP.
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AC EU931504;
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DT 11-AUG-2008 (Rel. 96, Created)
DT 11-AUG-2008 (Rel. 96, Last updated, Version 1)
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DE Rice stripe virus isolate YQJ07 segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2508
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT "Molecular Variability of RNA3 of Rice Stripe Virus in China";
RL Unpublished.
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RN [2]
RP 1-2508
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT ;
RL Submitted (28-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Virology, Fujian Agriculture and Forestry University,
RL Jinshan, Fuzhou, Fujian 350002, China
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CC GenBank Accession Numbers EU931502-EU931505 represent sequences
CC from the 4 segments of Rice stripe virus isolate YQJ07.
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FH Key Location/Qualifiers
FH
FT source 1. .2508
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /specific_host="Oryza sativa (rice)"
FT /isolate="YQJ07"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="infected leaves"
FT /collection_date="Jul-2007"
FT /db_xref="taxon:12331"
FT CDS 66. .701
FT /codon_start=1
FT /product="NS3 protein"
FT /protein_id="ACG58339.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCEDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEFRLPAIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKKHKYVISSDKPPLSARYVKYVDSSALGPSPGSSPAVL"
FT CDS complement(1448. .2416)
FT /codon_start=1
FT /product="CP protein"
FT /note="coat protein"
FT /protein_id="ACG58340.1"
FT /translation="MGTNKPATLADLQKAINDISKDALNYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGSNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLIDKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTK
FT LYLAQQSKLMKILAENTSKTATEVSGLVKDFFEDEAEGADD"
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SQ Sequence 2508 BP; 758 A; 538 C; 439 G; 773 T; 0 other;
eu931504 Length: 2508 11-AUG-2008 Type: N Check: 9866 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgatatcatc taagcatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctacttt tggagaatga tctgaccagt ttgagcatca
151 actgtgaaga tgtccactgc tcttcaagag ctttatgtta tatatatgac
201 atccattcat ctaggcaccc ctccattgat gagcatcagt ttctgaggct
251 tctccatggt cctgatgatg ctgtcactct aggctctttc ttaaagactc
301 tgatctggat tctgtcccat gataagaacc tcccagaaga gttcagactt
351 cctgctataa tgatgtcatc ctcttatgtg aagttcttca ctgaagtgaa
401 gccacgaccc ccatcaacaa attgctggac atgcaggatg tctaaggaca
451 atttgccctt taccgttcct agtgtcaagg ggtttcctcc agatgctgag
501 ctttacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaaag cataagtatg
601 tcatttcctc agacaagcca cctctcagtg cacgttatgt taagtacgtg
651 gattctagtg cactaggacc atcaccaggc agctctccag ctgtgctgta
701 gaaataaaga aaaaagagaa ggaaaattaa aacaaaaacc aaaaaaacaa
751 caaaaaaatc ttaaaaataa aaaataaaaa taaaaacaca aaaaacacaa
801 aaaactaaaa aaactaaaaa aactggaaag catcgtaatc taaaaaccta
851 cacaccactg gctgtctagt ggactctagc tggtagagaa agctatgctt
901 ttgcctaaag ccatgattgg ccaatcctta aaatgtgcta agcacattat
951 ccgaggatgt ctcggatgtt tttttaccta acctaatttt tttgtatttt
1001 tatatatttt ttgatttttt tgttttttat atacacattt ttgatttttt
1051 tgtttttttg gtcttttcat tttttatttt aatatatatt cttctagtta
1101 ctacatttat atatttactt agtcatatac tttacatata tagtatatat
1151 cacaaaacag agctatacaa taaaactaat atcactatac tacaagctta
1201 catctgaata tttagataga cttatcaaac taaagactct attagagagt
1251 gagcgataat aatagcaata tatcatacac aaaacctaaa agcacacaga
1301 taaaataact tatgttatat aatttatgac taaaatagac atgttatata
1351 tacatattaa cttacactta aaggaacaac acactgtttg aagacatgcg
1401 tcttctaggg agatatgaga cccccagcaa ctgctgacca gttcagtcta
1451 gtcatctgca ccttctgcct catcctcgaa gaaatccttc accaacccgc
1501 tgacttctgt tgctgtcttt gaagtgttct cagcaaggat cttcatcagc
1551 ttgctctgtt gagccaagta cagcttggtc tggttcccat atgtactgat
1601 cgtgttgaca gacataccag ccagtgcatc gaagattgtg gtcttcactt
1651 tcccattggt gatgaattca tctaagacct tctttctacc atcctccttc
1701 ttcttgtcaa tcaagttctt tgacttgcat gtgatgacca ggagaccagt
1751 tgtgtacttc atcatgtcta tgtcctttgt cagaccacgc tccttcttct
1801 taccctctgg catggtcttt ttagttattt ggaaggagtg aatgatgtgc
1851 acgacaaaca agatgtgact aagggagtga gttgtgcagt aaggagctgt
1901 ttcactctcc agtttgatgt attgtggaac atagtcccac agtaggttgt
1951 cacatcctgt cagccccaga tcagaagagt ccacagccat cttaacacca
2001 gaaatttgtc gcacaacttc atgtgagaca tttgggaata gctgagccaa
2051 cctcccaagt gtgatggcat tggcatttga tcccacagag gacactatcc
2101 cataccttga caccaaggtt gaagcctcag tgcttccagc cgccactttc
2151 actttcttgg tgacatctct cacaaagcca gtgcctctca catacctcat
2201 ggtgatgcac atagtcatat ccttggccaa tgtgtcacca cctttgtcct
2251 tcaatatgcc aatcagagtt gcagcatcat agcctgcata ctctatctga
2301 ccagcaaaag tcacaacatc agctttatga gcagtcaggt aattcaacgc
2351 atcttttgag atgtcattaa ttgccttctg caaatcagct agagtggctg
2401 gcttgttggt gcccattgta gcaagaggta ctggaggaat ggttgcggct
2451 tagatgaaat ttggaatgta aaagcaaaat cgaaaatttt attacccaga
2501 ctttgtgt