Sequence of DPV Rice stripe virus
Rice stripe virus isolate YQJ07 segment RNA4, complete sequence.
ACC No: EU931505
Dated: 2008-08-11 | Length: 2234 | CRC: 1080023849
ID EU931505; SV 1; linear; genomic RNA; STD; VRL; 2234 BP.
XX
AC EU931505;
XX
DT 11-AUG-2008 (Rel. 96, Created)
DT 11-AUG-2008 (Rel. 96, Last updated, Version 1)
XX
DE Rice stripe virus isolate YQJ07 segment RNA4, complete sequence.
XX
KW .
XX
OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
XX
RN [1]
RP 1-2234
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT "Molecular Variability of RNA4 of Rice Stripe Virus in China";
RL Unpublished.
XX
RN [2]
RP 1-2234
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT ;
RL Submitted (28-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Virology, Fujian Agriculture and Forestry University,
RL Jinshan, Fuzhou, Fujian 350002, China
XX
CC GenBank Accession Numbers EU931502-EU931505 represent sequences
CC from the 4 segments of Rice stripe virus isolate YQJ07.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2234
FT /organism="Rice stripe virus"
FT /segment="RNA4"
FT /specific_host="Oryza sativa (rice)"
FT /isolate="YQJ07"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="infected leaves"
FT /collection_date="Jul-2007"
FT /db_xref="taxon:12331"
FT CDS 55. .591
FT /codon_start=1
FT /product="SP protein"
FT /protein_id="ACG58341.1"
FT /translation="MQDVQRTIEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT VTEDTKNLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT GLFFNILQPSLGGWITKNFLRHPNRMSKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKM
FT PTYFESIIQPLLHKT"
FT CDS complement(1323. .2183)
FT /codon_start=1
FT /product="NSvc4 protein"
FT /protein_id="ACG58342.1"
FT /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT HYPFFRVATFAMVWIGIKGRASGVTTLRIIDKSYVNPSDQVEVEVRYPISKNFAVLGSL
FT ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTSDTVMFEFEPL
FT EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT VSVIM"
XX
SQ Sequence 2234 BP; 722 A; 462 C; 416 G; 634 T; 0 other;
eu931505 Length: 2234 11-AUG-2008 Type: N Check: 7637 ..
1 acacaaagtc cagggcattt gtacaacgat ccagcaattt aatcaaaatc
51 aaagatgcaa gacgtacaaa ggacaataga agtttctgtt ggtcctattg
101 taggcctaga ttacactctg ttgtatgaca ctctgcccga gactgtgagc
151 gataatatta ctctgcctga tttgaaagat ccagagagag tcacggaaga
201 tactaagaat ctaatactca aaggctgtgt ttatatagca tatcatcacc
251 ccttggagac tgacactctc ttcattaaag ttcacaagca tataccagag
301 ttttgtcact ccttcctatc acaccttcta ggaggtgaag atgatgacaa
351 tgctctgata gacattggcc tgttcttcaa catcttgcaa ccctctctgg
401 gcggttggat aaccaagaat tttcttagac acccaaacag gatgtctaag
451 gaccaaatta aaatgcttct ggatcagatt ataaagatgg ctaaggcaga
501 gagctcagac acagaagagt atgagaaagt gtggaagaag atgccaactt
551 attttgagtc aatcatccaa cctcttctac acaaaacata gtttattgct
601 tatcatatag tcccacctac gagtgcttgc attctaggag tgaagccagt
651 ttgggttgac ctgctagtat aaaaatataa gtatattata gtttaagaga
701 tatacacgat gtttgttcac ttgagcttgg cagtttgcaa gtaattgtgt
751 gtaattgtgc ataaatatat atatgtcaat atataactat gcataggtgt
801 gcagatgtaa acacttgaaa caaatataca cctatcaact tatatacacg
851 cttgtaagtc ttggttcttc ttaacacaaa catagaaaca tgagagtatc
901 aattagaact gccttggtgt tataagcaca gatatagctg tgtgtagaga
951 acactcaagg ctaagaattc tctaaaatcg ctttatacaa aaaccattat
1001 aaaaatacta acaactttgt tttcacaatg tcaacgctaa aaactgaaat
1051 aacaaaaaca tgagaaaata aaaaatcaaa aacaatgaat ggtgctaagc
1101 accacatccg gatgtggtgc gtagcaccat tttcatagta ttgatctata
1151 acctacttgt ggcataaaca cccacattca tgaagtgcat agcactctct
1201 tatggattgc ctactatgat tacatgaatg catagcatcc tcatggaaaa
1251 aatcagagca gaacagacca catcagatgc ttagcaccag atgttagcat
1301 accctggagc tagttatctc acttacatga taacagaaac ttcagatttt
1351 gatttctttg tgatgggtat cttctttggc tgcttcacca caccgaactc
1401 cttttcagtg tctagctcag ggaagctctt gctggtgaaa gcaccgccaa
1451 cagctttctg aacgacatta gtcgtgaaat tactgaagct agacaaatga
1501 tttattgcct tatcttctag tggttcaaac tcaaacatca cggtgtcact
1551 ggtcttcatg gatactggca gatcagttct ttcaatcccc cagaaccaaa
1601 gagttctaga gatgacacag ttctgcactg agctgtcatc aacagacaca
1651 gacacctgaa gattatgctt atcctctaaa gccagaaaat tcgctagaga
1701 acccaagacg gcaaaattct tgctaatcgg gtagcgaacc tctacctcaa
1751 cttgatcaga ggggttcaca taggacttgt ctattatgcg gagagtagtt
1801 actccactag ctctaccctt aattccaatc cagaccatag caaaagtagc
1851 cactctgaag aatggataat gagtgagagg ttgatgaaac caatatgggt
1901 caacaagtat gttgaaagtt gccttcctat gtgccttcac agaatagtcc
1951 tgtttggcta tgaacatatc atacttgttc accttgacat ctgagaagct
2001 gaaaggctcc aatccgagca ttgtagcagc ctggtcaatt gtgaccctac
2051 cctggttcag aggcctcttg gagagagcta gagatttcct attcttatta
2101 tcaactctct tttgagactc ctcactaagg tcatcataga gtaccttact
2151 ttttgaagtg gacaaaagtc gagacaaagc cataattaaa ttatatatta
2201 gcttaatctc aaaagatatg ccctgacttt gtgt