Sequence of DPV Rice stripe virus
Rice stripe virus isolate YWD07 segment RNA3, complete sequence.
ACC No: EU931508
Dated: 2008-08-11 | Length: 2510 | CRC: -423139499
ID EU931508; SV 1; linear; genomic RNA; STD; VRL; 2510 BP.
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AC EU931508;
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DT 11-AUG-2008 (Rel. 96, Created)
DT 11-AUG-2008 (Rel. 96, Last updated, Version 1)
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DE Rice stripe virus isolate YWD07 segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2510
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT "Molecular Variability of RNA3 of Rice Stripe Virus in China";
RL Unpublished.
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RN [2]
RP 1-2510
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT ;
RL Submitted (29-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Virology, Fujian Agriculture and Forestry University,
RL Jinshan, Fuzhou, Fujian 350002, China
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CC GenBank Accession Numbers EU931506-EU931509 represent sequences
CC from the 4 segments of Rice stripe virus isolate YWD07.
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FH Key Location/Qualifiers
FH
FT source 1. .2510
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /specific_host="Oryza sativa (rice)"
FT /isolate="YWD07"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="infected leaves"
FT /collection_date="Jul-2007"
FT /db_xref="taxon:12331"
FT CDS 66. .701
FT /codon_start=1
FT /product="NS3 protein"
FT /protein_id="ACG58346.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCEDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAITLGSFLKTLIWILSHDKNLPEEFRLPAIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKKHKYVISSDKPPLSARYVKYVDSSALGPSPGSSPAVL"
FT CDS complement(1450. .2418)
FT /codon_start=1
FT /product="CP protein"
FT /note="coat protein"
FT /protein_id="ACG58347.1"
FT /translation="MGTNKPATLADLQKAINDISKDALNYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGSNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLIDKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTK
FT LYLAQQSKLMKILAENTSKTATEVSGLVKDFFEDEAEGADD"
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SQ Sequence 2510 BP; 769 A; 535 C; 436 G; 770 T; 0 other;
eu931508 Length: 2510 11-AUG-2008 Type: N Check: 1098 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagcatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctacttt tggagaatga tctgaccagt ctgagcatca
151 actgtgaaga tgtccactgc tcttcaaggg ctttatgtta tatatatgac
201 atccattcat ctaggcaccc ctccattgat gagcatcagt ttctgaggct
251 tctccatggt cctgatgatg ctatcactct aggctctttc ttaaagactc
301 tgatctggat tctgtcccat gataagaacc tcccagaaga gttcagactt
351 cctgctataa tgatgtcatc ctcttatgtg aagttcttca ctgaagtgaa
401 gccacgaccc ccatcaacaa attgctggac atgcaggatg tctaaggaca
451 atttgccctt taccgttcct agtgtcaagg ggtttcctcc agatgcagag
501 ctttacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaaag cataagtatg
601 tcatttcctc agataagcca cctctcagtg cacgttatgt taagtacgtg
651 gattctagtg cactaggacc atcaccaggc agctctccag ctgtgctgta
701 gaaataaaga aaaaagagaa ggaaaattaa aacaaaaacc aaaaaaacaa
751 aaaaatctta aaaataaaaa aataaaaata aaaaataaaa ataaaaacac
801 aaaaaacaca aaaaaactaa aaaactggaa aacatcgtaa tctaaaaacc
851 tacacaccac tggctgtcta gtggactcta gctggtagag aaagctatgc
901 ttttgcctaa agccatgatt ggccaatcct taaaatgtgc taagcacatt
951 atccgaggat gtctcggatg tttttttacc taacctaatt tttttgtatt
1001 tttatatatt ttttgatttt tttgtttttt atatacatat ttttgatttt
1051 tttgtttttt tgtttttccc attttttatt ttaatatata ttcttctaga
1101 tactacattt atatatttac ctagtcatat actttacata tatagtatat
1151 atcacaaaat agagctatac aataaaacta atatcactat actacaagct
1201 aacatctgaa tatttagata gacttatcaa actaaagact ctattagaga
1251 gtgagcgata ataatagcaa tacatcatac acaaaaccta aaaccacata
1301 gataaaataa cttatgtgat ataatttaaa actaaaatag acatgttata
1351 tatacatatt aacttacact taaaggaaca acacactgtt tgaagacatg
1401 cgtcttctag ggagatatga gaaccccagc aactgctgac cagttcagtc
1451 tagtcatctg caccttctgc ctcatcctcg aagaaatcct tcaccaaccc
1501 gctgacttca gttgctgtct ttgaagtgtt ctcagcaagg atcttcatca
1551 gcttgctctg ttgagccaag tacagcttgg tctggttccc atatgtactg
1601 atcgtgttga cagacatacc agccagtgca tcgaagattg tggtcttcac
1651 tttcccattg gtgatgaatt catctaagac cttctttcta ccatcctcct
1701 tcttcttgtc aatcaagttc tttgacttgc atgtgatgac caggagacca
1751 gttgtgtact tcatcatgtc tatgtccttt gtcagaccac gctccttctt
1801 cttaccctct ggcatggtct ttttagttat ttggaaggag tgaatgatgt
1851 gcacaacaaa taagatgtga ctaagggagt gagttgtgca gtaaggagct
1901 gtttcactct ccagtttgat gtattgtgga acatagtccc acagtaggtt
1951 gtcacatcct gtcagcccca gatcagaaga gtccacagcc atcttaacac
2001 cagaaatttg tcgcacaact tcatgtgaga catttgggaa tagctgagcc
2051 aaccttccaa gtgtgatggc attggcattt gatcccacag aggacactat
2101 cccatacctt gacaccaagg ttgaagcctc agtgcttcca gccgccactt
2151 tcactttctt ggtgacatct ctcacaaagc cagtgcctct cacatacctc
2201 atggtgatgc acatagtcat atccttggcc aatgtgtcac cacctttgtc
2251 cttcaatatg ccaatcagag ttgcagcatc atagcctgca tactctatct
2301 gaccagcaaa agtcacaaca tcagctttat gagcagtcag gtaattcagc
2351 gcatcttttg agatgtcatt gattgccttc tgcaaatcag ctagagtggc
2401 tggcttgttg gtgcccattg tagcaagaag tactggagga atggttgcgg
2451 cttagatgaa atttggaatg taaaagcaaa atcgaaaatt ttattaccca
2501 gactttgtgt