Sequence of DPV Rice stripe virus
Rice stripe virus isolate SJN07 segment RNA2, complete sequence.
ACC No: EU931511
Dated: 2008-08-11 | Length: 3514 | CRC: 422320425
ID EU931511; SV 1; linear; genomic RNA; STD; VRL; 3514 BP.
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AC EU931511;
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DT 11-AUG-2008 (Rel. 96, Created)
DT 11-AUG-2008 (Rel. 96, Last updated, Version 1)
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DE Rice stripe virus isolate SJN07 segment RNA2, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-3514
RA Cheng W., Yang J., Wu Z., Xie L.;
RT "Molecular Variability of RNA2 of Rice Stripe Virus in China";
RL Unpublished.
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RN [2]
RP 1-3514
RA Cheng W., Yang J., Wu Z., Xie L.;
RT ;
RL Submitted (29-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Virology, Fujian Agriculture and Forestry University,
RL Jinshan, Fuzhou, Fujian 350002, China
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CC GenBank Accession Numbers EU931510-EU931513 represent sequences
CC from the 4 segments of Rice stripe virus isolate SJN07.
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FH Key Location/Qualifiers
FH
FT source 1. .3514
FT /organism="Rice stripe virus"
FT /segment="RNA2"
FT /specific_host="Oryza sativa (rice)"
FT /isolate="SJN07"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="infected leaves"
FT /collection_date="Jul-2007"
FT /db_xref="taxon:12331"
FT CDS 81. .680
FT /codon_start=1
FT /product="NS2 protein"
FT /protein_id="ACG58351.1"
FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI
FT WLMGCCEEFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL
FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV
FT TNGIPISKNFNEIALPDPSPSEDYVLVGAHECPILM"
FT CDS complement(980. .3484)
FT /codon_start=1
FT /product="NSvc2 protein"
FT /protein_id="ACG58352.1"
FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC
FT SARAPPCKLTYELNGYFIENGLICYNRASANYFETCYTGSYDYKLPLHPSFSKFGGHVY
FT LSCDDAILQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVETRACIQ
FT PDQAKKPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI
FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYRYSLYSIILFLVIVIVFAL
FT ITIMNILFFLRPAFWLLKKVLYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED
FT SIAPNTNVSDKVKRKGRKVENGLIFIPYVLMILLLVCSAESCQDLVSSISNIERCTNNS
FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFRRVISREEWK
FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHILSYCPAYHYNWKRIEYEPTSSRACTI
FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA
FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSSKCKTKILSNEDLPVIRYVERDGVDMLE
FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER
FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTVGSMIKCKF
FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS
FT IIPIGLILKTIRSFLDDIRQVD"
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SQ Sequence 3514 BP; 1067 A; 747 C; 634 G; 1066 T; 0 other;
eu931511 Length: 3514 11-AUG-2008 Type: N Check: 8513 ..
1 acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga
51 aatcgtccac ggagaatctc gtcttcagca atggcattac tcctcttcaa
101 tgatcactac tatggttttc tccataagta taaaagacat actggatcat
151 atgataatct cttcaatttg aggtgctcta aagaagacca ctatttgaac
201 tctcttgatg ctatctggct catgggatgc tgtgaggagt tcacagatcc
251 agctcttaga gcacatgctc tcgccatagc aactgaatct aatataggtt
301 tggttaacaa taatgccgtg atatctgatg agaggctgaa atgctggctc
351 tgtaaaaaac catctcatca acagactgag catctgaaac tgatcctgtt
401 acccaacttg gtcaacgggt ttcagtttgc tacagagtca tatcacatat
451 gcctgaagga tcactctgga gatgacccta cacaatatct tagtgagttc
501 tcctttccca caggattaag agcctactac aagccacatc aaaagatgga
551 gcataaacat atagttgtaa ccaatggaat acccatctca aagaatttca
601 acgaaattgc tctccctgac ccatctccta gtgaagacta tgtcttagtt
651 ggagcacatg agtgccctat tctaatgtga acttggaaga tgatattgac
701 tgtggcctac aggcacatac acacactggc cacaaacact acaatggtgc
751 tatgcatcaa tttataatct tatatcctcg aaatggtgct acgcaccaca
801 tccggatggt gagcctagct cactttgatt attgagtaaa ttaatgaaac
851 caaacaagta tatttgtaac tataatagct ttcttattat tatgtgatca
901 agacacttaa aactacacac ttaagcttaa gggaagatta ttaatagaaa
951 tatgggcata catgagtgaa cctattggct taatcaacct gtctgatgtc
1001 atctagaaaa ctcctaatgg tcttcaaaat gagtcctatt ggtattattg
1051 aagctactag agataacttt gggttgtcct tgactatccc ggctagcaat
1101 tccatccaat tagtggtgct ggtcttcaca gcttcaaaag agctcacatc
1151 aaggctcggc gatatcacgg tgatttccaa tggtgaaaca tcatacttgc
1201 acatgagagt atcaccggag tatatgaatt tgcatttgat catggaacca
1251 actgtgaccg aatagtaagt tgttgttatg catgttcctt ttttaatgtt
1301 gttcagtatc atagggcaaa ctgccaatcc ttcgcaggcc aagatatcac
1351 tgagatagac tttgtttgaa gattcaatgc ttacagttgt cttcttaaat
1401 ttcctctcta ttccagtgat cttgcatgag gtcccattga gagatatctt
1451 actagttatt atactggtga tcgcttcctt gaattgcaag tttagctcta
1501 ctgggaatag atccaaagtg cccagagata taccagagct agagaccaac
1551 acatccttta agggttcact tttcacatgc tctagcatat ccactccatc
1601 cctctctaca tacctaataa ctggcaaatc ttcatttgaa agtatcttag
1651 ttttacactt actgctaaga acaacagcat cttctttagt tggacactgt
1701 atgttgccta gtaactcctt gtcaaaagac cctaaatcat ttgcggtcct
1751 taaataagct ttcccatcgc actctgcata ttctctaggc attctggcac
1801 tattatagtt tgacaatgat atggaaacta aagggctatc atacttacta
1851 gtaatgcctc ctagttcttt taacacatgc ccattttttt gaatataccc
1901 aactatttca aacttagtat ccatgcactt cataatggtg catgctcttg
1951 aagatgttgg ttcatattct attctcttcc aattgtagtg gtatgctggg
2001 caataggaaa ggatgtggaa atcagtgaca caataatcaa agctcagact
2051 agtggattcc ccccatatcg agtgtgttcc atcagttctg caaccttccc
2101 cttcaaagca tttccattcc tctctagaga tcacccttct gaaactgttg
2151 gtataataca gaggcactga taagcacata acccgaacac tattaaatcg
2201 tatcttgtag acatcagtcg atgtcttgaa gcagaaatcc tgaggagtgt
2251 ttagtagggt caatttcatt ttagagatga agtcacaact attatttgtg
2301 cacctctcta tattggagat gcttgaaaca aggtcttgac aggattctgc
2351 agaacaaact aatagcaaga tcatcaatac atatggtatg aatatcagcc
2401 cattctctac ttttctaccc ttcctcttta ctttatcgga aacattagtg
2451 ttaggtgcaa tggagtcttc tacaactaac aggccctcct ctgcttcatc
2501 tactactcta actgttgaca tatctacaga cacttcatct acaacaggtc
2551 ttctatgaca tagtccaacc attgaatata gtaccttttt tagcagccaa
2601 aatgcaggtc ttaggaaaaa taagatattc attatggtga tgagagcgaa
2651 tactatcact ataacaagga acaagattat agagtacaat gaatatctat
2701 agatgtgaga gcattgataa ttctttatcc tcattatcat gtccattctc
2751 tcatacttat cacaaatctc tcctgggtga caagtaacat tttgacaacc
2801 acccttatca caaacctcaa tagtatcatc ataagttgga agtttgaccg
2851 attcacaaga agggatagaa aatgtttggt cactaacatt gacctcacat
2901 gcagaattga tataatacag cacaccatct gtgcaagagg gcttgattgc
2951 aacaccatga tttatgattt cttctggttt cttagcttgg tcaggctgaa
3001 tgcatgccct agtctcaaca gcatacacta ttcccaagaa accagttttg
3051 agatttgagt atgaaatctt ttcagaattg gaattagtta tcaatagagg
3101 gcttgaagtg tattctgttt gctgtatgcc aaccagagat acattctgca
3151 gaatagcatc atcacaactg agatagacgt gaccaccgaa cttagagaaa
3201 gaaggatgga gtggcagctt gtaatcgtag cttccagtgt agcatgtctc
3251 aaagtaattc gcactagccc tgttgtaaca aatcagacca ttttcaatga
3301 aatatccatt cagctcataa gtcaatttgc agggaggggc tctggcactg
3351 caagggacct tgacaatctc agatggctcc ctctccctgt tcctcatcca
3401 ggaatgggtg tcagggaaag gtattggtgc accccacgcc atattaaaga
3451 ttgtggtgta gatgaaatat gatttaaaat gcatcttcga agaagttata
3501 cccagacttt gtgt