Sequence of DPV Rice stripe virus
Rice stripe virus isolate SJN07 segment RNA3, complete sequence.
ACC No: EU931512
Dated: 2008-08-11 | Length: 2479 | CRC: 1652941987
ID EU931512; SV 1; linear; genomic RNA; STD; VRL; 2479 BP.
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AC EU931512;
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DT 11-AUG-2008 (Rel. 96, Created)
DT 11-AUG-2008 (Rel. 96, Last updated, Version 1)
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DE Rice stripe virus isolate SJN07 segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2479
RA Cheng w., Yang j., Wu z., Xie l.;
RT "Molecular Variability of RNA3 of Rice Stripe Virus in China";
RL Unpublished.
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RN [2]
RP 1-2479
RA Cheng W., Yang J., Wu Z., Xie L.;
RT ;
RL Submitted (29-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Virology, Fujian Agriculture and Forestry University,
RL Jinshan, Fuzhou, Fujian 350002, China
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CC GenBank Accession Numbers EU931510-EU931513 represent sequences
CC from the 4 segments of Rice stripe virus isolate SJN07.
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FH Key Location/Qualifiers
FH
FT source 1. .2479
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /specific_host="Oryza sativa (rice)"
FT /isolate="SJN07"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="infected leaves"
FT /collection_date="Jul-2007"
FT /db_xref="taxon:12331"
FT CDS 66. .701
FT /codon_start=1
FT /product="NS3 protein"
FT /protein_id="ACG58353.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPKPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSPAVL"
FT CDS complement(1419. .2387)
FT /codon_start=1
FT /product="CP protein"
FT /note="coat protein"
FT /protein_id="ACG58354.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2479 BP; 766 A; 525 C; 426 G; 762 T; 0 other;
eu931512 Length: 2479 11-AUG-2008 Type: N Check: 4023 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaaaaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttaccctt taccgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat ggaaagcctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagtg cactagaacc ctcaccaggc agctctccag ctgtgctgta
701 gaaataaaaa gaaaaaaaga aaaaagaaaa taaaacaaat aatcaaaaaa
751 acacaaaaaa aatcttaaaa atgaaaaaca caaaaaaacc aaaaaactaa
801 aaaaactaaa aaacatcatg acctaaaaaa actgcacacc actggttgtc
851 tagtgggttc tagttggtag agaaagctat gcttttgcct aaagccatga
901 ttggccaatc cttaaaatgt gctaagcaca ttatccgaag atgtctcgga
951 tgttttttta cctaacctaa tttttttgta tttttatata attttttgat
1001 ttttttgtat tttatataca tatttttgtt ttttgatttt tttgtttttt
1051 aatatttttt cttctaattt ctacattaat atatttgatt attcatatac
1101 ttaaaatata tagtatgtat tataaaaata gagcaatata ataaagctag
1151 tataactaca ttacaaacat atatctaaat atttagatag acttatcaaa
1201 ctaaagactc tactagagag tgagtaataa taatggcaat acatcacaca
1251 caaagcccaa aaccacacag acaaaataac ttatggaata taattaaaaa
1301 ctaaaataca cacatataaa tatacatatt aacttacacc taaagaaaca
1351 acacactgtt tgaagacata catcttccag ggagatatga gatcccccac
1401 aactactgac ctgtcagttt agtcatctgc accttctgcc tcgtcctcga
1451 agaactcctt caccaacccg ctgacttcag atgctgtctt tgaagtgttc
1501 tcagcaagga tcttcatcag cttgctctgt tgagccaagt acagccttgt
1551 ctgattccca taagtgctga tcgtattgac agacatacca gccagcgcat
1601 cgaagattgt ggtcttcact ttcccattgg tgatgaattc atctaagacc
1651 ttctttctgc catcttcctt cttcttgtca gccaggttct ttgacttgca
1701 tgtgatgacc aggagaccag ttgtgtactt catcatgtct atgtcttttg
1751 tcagaccacg ctccttcttc ttaccctctg gcatggtctt tttggttatt
1801 tggaaggagt gaatgatgtg cacaacaaac aaaatgtgac ttagggagtg
1851 agttgtgcag taaggagctg tttcactctc cagtttgatg tattgtggaa
1901 catagtccca cagtaagttg tcacatcctg ttagtcccag gtcagaggag
1951 tccacagcca tcttaacacc agaaatttgt ctcacaactt catgtgagac
2001 attagggaat agctgagcca gccttccaag tgtgatagca ttggcatttg
2051 tccctaccga ggacactatc ccatacctcg acaccaaggt cgaagcctct
2101 gtgcttccag ccgccacttt cactttctta gtgacatctc ttacaaagcc
2151 agtgcctctc acatatctca tggtgatgca catagtcata tccttggcca
2201 gtgtgtcacc acctttgtcc ttcaatatgc caatcagagt tgcagcatca
2251 tagcctgcat actctatctg accagcaaag gtcacaacat cagctttatg
2301 agcagtcagg taagacaacg catctttgga gatgtcattg attgccttct
2351 gcaaatcagc tagagtggct ggcttgttgg tgcccattgt agcaagaggt
2401 actggaggaa tggttgcggc ttagatgaaa tttggaatgt aaaagcaaaa
2451 tcgaaaattt tattacccag actttgtgt