Sequence of DPV Rice stripe virus
Rice stripe virus isolate JYC07 segment RNA3, complete sequence.
ACC No: EU931516
Dated: 2008-08-11 | Length: 2476 | CRC: 2042490421
ID EU931516; SV 1; linear; genomic RNA; STD; VRL; 2476 BP.
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AC EU931516;
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DT 11-AUG-2008 (Rel. 96, Created)
DT 11-AUG-2008 (Rel. 96, Last updated, Version 1)
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DE Rice stripe virus isolate JYC07 segment RNA3, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2476
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT "Molecular Variability of RNA3 of Rice Stripe Virus in China";
RL Unpublished.
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RN [2]
RP 1-2476
RA Cheng W., Xiao D., Wu Z., Xie L.;
RT ;
RL Submitted (29-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Virology, Fujian Agriculture and Forestry University,
RL Jinshan, Fuzhou, Fujian 350002, China
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CC GenBank Accession Numbers EU931514-EU931517 represent sequences
CC from the 4 segments of Rice stripe virus isolate JYC07.
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FH Key Location/Qualifiers
FH
FT source 1. .2476
FT /organism="Rice stripe virus"
FT /segment="RNA3"
FT /specific_host="Oryza sativa (rice)"
FT /isolate="JYC07"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="infected leaves"
FT /collection_date="Jul-2007"
FT /db_xref="taxon:12331"
FT CDS 66. .701
FT /codon_start=1
FT /product="NS3 protein"
FT /protein_id="ACG58360.1"
FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD
FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY
FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN
FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSTLEPSPGSSPAVL"
FT CDS complement(1416. .2384)
FT /codon_start=1
FT /product="CP protein"
FT /note="coat protein"
FT /protein_id="ACG58361.1"
FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG
FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR
FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV
FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT
FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR
FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD"
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SQ Sequence 2476 BP; 763 A; 527 C; 422 G; 764 T; 0 other;
eu931516 Length: 2476 11-AUG-2008 Type: N Check: 7570 ..
1 acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc
51 cgacatcatc taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga
101 atttgatcat cctctgcttt tggagaatga tctgaccagt ttgagcataa
151 actgtgatga tgtccattgt tcttcaagag ccttatgtta tatatatgac
201 attcattcat ctaggcaccc ttccattgat gagcatcagt ttctgaggct
251 tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc
301 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt
351 cctactataa tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa
401 gccaagaccc ccatcaacaa attgctggac atgcagaatg tccaaagaca
451 atttgccctt tactgttcct agtgtcaagg gatttcctcc agatgcagag
501 ctctacattg tgccaatatc tgaccatgat gggaaacctg tcaaatttga
551 caataggaag actctatata gatcacctag taagaaaagg cataagtatg
601 tcatttcttc cgataaacca cctcttagtg cacgttatgt taagtacgtt
651 gattctagta cactagaacc ctcaccaggc agctctccag ctgtgctgta
701 gaaataaaaa gaaaaaaaga aaaaagaaaa taaaacaaat aatcaaaaaa
751 acacaaaaaa atcttaaaaa tgaaaaacac aaaaaaccaa aaaaactaaa
801 aaaactaaaa aacatcatga cctaagaaac tgcacaccac tggttgtcta
851 gtgggctcta gttggtagag aaagctatgc ttttgcctaa agccatgatt
901 ggccaatcct taaaatgtgc taagcacatt atccgaagat gtctcggatg
951 tttttttacc taacctaatt tttttgtatt tttatataat tttttgattt
1001 ttttgtattt tatacatatt tttgtttttt gatttttttg ttttttaata
1051 ttttttcttc taattactac attaatatat ttgattattc atatacttaa
1101 aatatatagt atgtattata aaaatagagc aatataataa agctagtata
1151 actacatcac aaacatatat ctaaatattt agatagactt atcaaactaa
1201 agactctact agagagtgag taataataat agcaatacat cacacacaaa
1251 gcccaaaacc acacagacaa tataacttat ggaatataat taaaaactaa
1301 aatatacaca tataaatata catattaact tacacctaaa gaaacaacac
1351 actgtttgaa gacatgcatc ttccagggag atatgagatc ccccacaact
1401 actgacttgt tcagtctagt catctgcacc ttctgcctcg tcctcgaaga
1451 actccttcac caacccgctg acttctgatg ctgtctttga agtgttctca
1501 gcaaggatct tcatcagttt gctctgttga gccaagtaca gccttgtctg
1551 attcccataa gtgctgatcg tattgacaga cataccagcc agcgcatcga
1601 agattgtggt cttcactttc ccattggtga tgaattcatc taagaccttc
1651 tttctgccat cttccttctt cttgtcagcc aggttctttg acttgcatgt
1701 gatgaccagg agaccagttg tgtacttcat catgtctatg tcttttgtca
1751 gaccacgctc cttcttctta ccctctggca ttgtcttttt ggttatttgg
1801 aaggagtgaa tgatgtgcac aacaaacaaa atgtgactta gggagtgagt
1851 tgtgcagtaa ggagctgttt cactctccag tttaatatat tgtggaacat
1901 agtcccacag taagttatca catcctgtta gtcccaggtc agaggagtcc
1951 acagccatct taacaccaga aatttgtctc acaacttcat gtgagacatt
2001 tgggaatagc tgagccagcc ttccaagtgt gatagcattg gcatttgtcc
2051 ccaccgagga cactatccca tacctcgaca ccaaagtcga agcctctgtg
2101 cttccagccg ccactttcac tttcttagtg acatctctca caaagccagt
2151 gcctctcaca tatctcatgg tgatgcacat agtcatatcc ttggccagtg
2201 tgtcaccacc tttgtccttc aatatgccaa tcagagttgc agcatcatag
2251 cctgcatact ctatctgacc agcaaaggtc acaacatcag ctttatgagc
2301 agtcaggtaa gacaacgcat ctttggagat gtcattgatt gccttctgca
2351 aatcagctag agtggctggc ttgttggtgc ccattgtagc aagagttact
2401 ggaggaatgg ttgcggctta gatgaaattt ggaatgtaaa agcaaaatcg
2451 aaaattttat tacccagact ttgtgt