Sequence of DPV Rice stripe virus
Rice stripe virus isolate ABB07 segment RNA2, complete sequence.
ACC No: EU931523
Dated: 2008-08-11 | Length: 3514 | CRC: 1415680463
ID EU931523; SV 1; linear; genomic RNA; STD; VRL; 3514 BP.
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AC EU931523;
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DT 11-AUG-2008 (Rel. 96, Created)
DT 11-AUG-2008 (Rel. 96, Last updated, Version 1)
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DE Rice stripe virus isolate ABB07 segment RNA2, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-3514
RA Cheng w., Wu j., Wu z., Xie l.;
RT "Molecular Variability of RNA2 of Rice Stripe Virus in China";
RL Unpublished.
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RN [2]
RP 1-3514
RA Cheng W., Wu J., Wu Z., Xie L.;
RT ;
RL Submitted (29-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Virology, Fujian Agriculture and Forestry University,
RL Jinshan, Fuzhou, Fujian 350002, China
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CC GenBank Accession Numbers EU931522-EU931525 represent sequences
CC from the 4 segments of Rice stripe virus isolate ABB07.
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FH Key Location/Qualifiers
FH
FT source 1. .3514
FT /organism="Rice stripe virus"
FT /segment="RNA2"
FT /specific_host="Oryza sativa (rice)"
FT /isolate="ABB07"
FT /mol_type="genomic RNA"
FT /country="China"
FT /isolation_source="infected leaves"
FT /collection_date="Jul-2007"
FT /db_xref="taxon:12331"
FT CDS 81. .680
FT /codon_start=1
FT /product="NS2 protein"
FT /protein_id="ACG58372.1"
FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI
FT WLMGCCEDFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL
FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV
FT TNGIPISKNFNEIALPDPSPSEDYVLVGAHECPILM"
FT CDS complement(980. .3484)
FT /codon_start=1
FT /product="NSvc2 protein"
FT /protein_id="ACG58373.1"
FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRSREREPSEIVKVPC
FT SARAPPCKLTYELNGYFIENGLICYNRASVNYFETCYTGNYDYKLPLHPSFSKFGGHVY
FT LSCDDAILQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVETRACIQ
FT PDQAKKPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI
FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYRYSLYSIILFFVIVIVFTL
FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED
FT SIAPNTNVSDKVKRKGRKVENGLIFIPYVLMILLLVCSAESCQDLVSSISNIERCTNNS
FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK
FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI
FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA
FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSSKCKTKILSNEDLPVIRYVERDGVDMLE
FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER
FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTVGSMIKCKF
FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS
FT IIPIGLILKTIRSFLDDIRQVD"
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SQ Sequence 3514 BP; 1064 A; 752 C; 634 G; 1064 T; 0 other;
eu931523 Length: 3514 11-AUG-2008 Type: N Check: 7516 ..
1 acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga
51 aatcgtccac ggagtatctc gtcttcagca atggcattac tcctcttcaa
101 tgatcactac tatggttttc tccataagta taaaagacat actggatcat
151 atgataatct cttcaattta aggtgctcta aagaagacca ctatttgaac
201 tctcttgatg ccatctggct catgggatgc tgtgaggatt tcacagatcc
251 agctcttaga gcacatgctc tcgccatagc aactgaatct aacataggtt
301 tggttaacaa taatgccgtg atatctgatg agaggctgaa atgctggctc
351 tgtaaaaaac catctcatca acagactgag catctgaaac tgatcctgtt
401 acccaacttg gtcaacgggt ttcagtttgc tacagagtca taccacatat
451 gcctgaagga tcactctgga gatgacccta cacaatatct tagtgagttc
501 tcctttccca caggattaag agcctactac aagccacatc agaaaatgga
551 gcataaacac atagttgtaa ccaatggaat acccatctct aagaatttca
601 acgaaattgc tctacctgac ccatctccta gtgaagacta tgtcttggtt
651 ggagcacatg agtgccccat tctaatgtga acttggaaga tgatattgac
701 tgtggcctac aggcatatac tcacactggc cacaaacact acaatggtgc
751 tatgcatcag tttataatct tatatcctcg aaatggtgct acgcaccaca
801 tccggatggt gagcctagct cactttgatt attgagtaaa ttaatgaaaa
851 caaacaagta taattgtaac tataatagct ttcttattat tatgtgatca
901 agacacttaa aactacacac ttaagcctaa gggaagatta ttaatagaaa
951 tatgggcata catgagtgaa cctattggct taatcaacct gtctgatgtc
1001 atctaggaag ctcctaatgg tcttcaaaat gagtcctatt ggtattattg
1051 aagctactag agataacttt gggttgtcct tgactatccc ggctagcaat
1101 tccatccaat tggtggtgct ggtcttcaca gcttcaaaag agctcacatc
1151 aaggctcgga gatatcacgg tgatttccaa tggtgaaaca tcatacttgc
1201 acatgagagt atcaccggag tatatgaatt tgcatttgat catggaacca
1251 actgtgaccg aatagtaagt tgttgttatg catgttcctt ttttaatgtt
1301 gttcagtatc atagggcaaa ctgccaatcc ctcgcaggcc aagatatcac
1351 tgagatagac tttgtttgag gattcaatgc ttacagttgt cttcttaaac
1401 ttcctctcta ttccagtgat cttgcatgag gtcccattga gagatatttt
1451 actagttatt atgctggtga ttgcttcctt gaattgcaag ttcagctcta
1501 ctgggaatag atccaaagtg cccagagata taccagagct agagaccaac
1551 acatccttta agggttcact tttcacatgc tctagcatat ccactccatc
1601 cctctctaca tacctaataa ctggcaaatc ttcatttgaa agtatcttag
1651 ttttacactt gctgctaaga acaacagcat cttctttagt tgggcactgt
1701 atgttgccta gtaactcctt gtcaaaagac cctaaatcat ttgcggtcct
1751 taaataagct ttcccatcac actctgcata ttctctaggc attctggcgc
1801 tattatagtt tgacaatgat atggaaacta aagggctatc atacttacta
1851 gtaatgcctc ctagttcttt caacacatgc ccattttttt gaatataccc
1901 aactatttca aacttagtat ccatgcactt cataatggtg catgctcttg
1951 aagatgttgg ttcatattct attctcttcc aattgtagtg gtatgctggg
2001 caataggaaa atatgtggaa atcagtgaca caataatcaa agctcagact
2051 agtggattcc ccccatatcg agtgtgttcc atcagttctg caaccttccc
2101 cttcaaaaca tttccattcc tctctagaga tcaccctttt gaaactgttg
2151 gtataataca gaggcactga taagcacata acccgaacac tattaaatcg
2201 tatcttgtag acatcagtcg atgtcttgaa gcagaaatcc tgaggagtgt
2251 ttagtagggt caatttcatt ttagagatga agtcacaact attatttgtg
2301 cacctctcta tattggaaat gcttgaaaca aggtcttgac aggattccgc
2351 agaacaaact aatagcaaga tcatcaatac atatggtatg aatatcagcc
2401 cattctctac ttttctaccc ttcctcttta ctttatcgga aacattagtg
2451 ttaggtgcaa tggagtcttc cacaactaac aggccctcct ctgcttcatc
2501 cactacccta actgttgaca tatctacaga cacttcatct acaacaggtc
2551 ttctatgaca tagtccaacc attgaatata gtaccttttt tagcagccag
2601 aatgcaggtt ttaggaaaaa taagatattc attatggtga tgagagtgaa
2651 tactatcact ataacaaaga acaagattat agagtacaat gaatatctat
2701 agatgtgaga gcattgataa ttctttatcc tcattatcat gtccattctc
2751 tcatacttat cacaaatctc tcctgggtga caagttacat tttgacaacc
2801 acccttatca caaacttcaa tagtatcatc ataagttgga agtttgaccg
2851 attcacaaga agggatagaa aatgtttggt cactcacatt gacctcacat
2901 gcagaattga tataatacag cacaccatct gtgcaagagg gcttgattgc
2951 aacaccatga tttatgattt cttctggttt cttagcttgg tcaggctgaa
3001 tgcatgccct agtctcaaca gcatacacta ttcccaagaa accagttttg
3051 agatttgagt atgaaatctt ttcagaattg gaattagtta tcaaaagagg
3101 gcttgatgtg tattctgttt gctgtatgcc aaccagagat acattctgca
3151 gaatagcatc atcgcaactg agatagacgt ggccaccgaa cttagagaaa
3201 gaaggatgga gtggcagctt gtaatcgtag tttccagtgt agcatgtctc
3251 aaagtaattc acactagccc tgttataaca aatcagacca ttttcaatga
3301 aatatccatt cagctcataa gtcaatttac agggaggggc tctggcactg
3351 caagggacct taacaatctc agatggctcc ctctccctgc tcctcatcca
3401 agaatgggtg tcagggaaag gtattggtgc accccacgcc atattaaaga
3451 ttgtggtgta gatgaaatat gatttaaaat gcatcttcga agaagttata
3501 cccagacttt gtgt