Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak virus isolate NTG10 polyprotein (pol) gene, partial cds.
ACC No: FJ026002
Dated: 2009-06-18 | Length: 3467 | CRC: -1526449226
ID FJ026002; SV 1; linear; genomic RNA; STD; VRL; 3467 BP.
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AC FJ026002;
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DT 15-MAY-2009 (Rel. 100, Created)
DT 18-JUN-2009 (Rel. 101, Last updated, Version 2)
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DE Cassava brown streak virus isolate NTG10 polyprotein (pol) gene, partial
DE cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-3467
RX PUBMED; 19386713.
RA Mbanzibwa D.R., Tian Y., Mukasa S.B., Valkonen J.P.;
RT "Cassava brown streak virus (Potyviridae) encodes a putative Maf/HAM1
RT pyrophosphatase implicated in reduction of mutations and a P1 proteinase
RT that suppresses RNA silencing but contains no HC-Pro";
RL J. Virol. 83(13):6934-6940(2009).
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RN [2]
RP 1-3467
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Valkonen J.P.T.;
RT ;
RL Submitted (14-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL Applied Biology, University of Helsinki, Latokartnonkaari 7, Helsinki
RL 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .3467
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="NTG10"
FT /mol_type="genomic RNA"
FT /country="Uganda"
FT /collection_date="2007"
FT /db_xref="taxon:137758"
FT 5'UTR <1. .130
FT gene 131. .>3467
FT /gene="pol"
FT CDS 131. .>2254
FT /codon_start=1
FT /gene="pol"
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /protein_id="ACM48174.1"
FT /translation="MSTIQLFKTIRFGSFEPVKLDEGNNVIEKVPIDLLAGNDGSGPEE
FT QSEQKYHRKESGESWRKVTDLYSVIGNSVYCRSYVAMKNFLNDTKWGGLFKNKKGQELK
FT AAARLRRATSYGFMYDPVACAFECPVCRTKATALEAFTSDCDHCFEVKHIDDDRIVQTE
FT TKFYPINPIELDVEDNLVEAASLEWLKGEVEERVVDRVLLLEDKEIRVTKKALVKRRAE
FT TKLVANVADLTKKLTEICCESGIPIIDIDNSKRKAIPMVKLKHIFGKIECDDMFGEDRY
FT FLEHSNAGKIFRSCERITYRMIRPGWSGAIILRDNVQGEDHDKFDFINDICVVQGKNLI
FT SNKIENAMRVKTETEMDLIDLYSFNLSWAKSKDKFIKHFESDTTQLIRSCCTPSTLWLY
FT ARKARFYKFVDHMILKGSPIIDILVKMEYVGKHLDLFNSVEDVCTEFFSFMKELISETV
FT NDKSDPDVLRVRNLIRAHFESVLEYNKYELIDRIIEKKTQLEAQEIMSRELIRHQYGEL
FT FSWRERLYLKLGIGSSNLYTYWVEREEKQSEKSSAISCIISKPGIEMLINWVSEVCKSK
FT YHSLVNCVDSGILFLWSRIVHLARVSVYGYWNLWFRQAMCVLFIFLVSNFSCKIVNYLK
FT TLIVNEKKLAIKNEEGFVEVQGRKEESFVLKWCAAATLFLSFLNYDWAVGCVSAIGKMK
FT TIFSALGPDFIEKQ"
FT mat_peptide 131. .1216
FT /gene="pol"
FT /product="P1 protein"
FT mat_peptide 1217. .2098
FT /gene="pol"
FT /product="P3 protein"
FT mat_peptide 2099. .2254
FT /gene="pol"
FT /product="6K1 protein"
FT gap 2255. .2354
FT /estimated_length=unknown
FT CDS <2355. .>3467
FT /codon_start=1
FT /gene="pol"
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /protein_id="ACM48175.1"
FT /translation="VSIIQSRFRELFSECGLDYNFDDVHKSIETIEYMSHSFMLKDDVY
FT IPKLKKERIVAILEWERGDEIMRTRSALNAAYIESYGYDDLMVEIERYAVFWATEKGCE
FT YPLLDRKRVEGLYKDDHTDINEEWLRGILPPSFEHCYVDTQTKDLRREEQPELRPESYD
FT RTTQMQMKFPVTFVTGNLGKLAEVKSILGIANDVIARNIDLPEVQGTPDEIVRKKAQLA
FT VKMTNSPVLVEDTCLCFNAFNGLPGPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFA
FT YVHNESSDPIVFKGVVNGEIVPPRGNNGFGWDPIFKPDECSCTFAEMSSSMKNDFSHRR
FT RALEKVKSFLDNLVVKQEEKKARVALTIDVQ"
FT mat_peptide <2355. .2789
FT /gene="pol"
FT /product="NIb protein"
FT mat_peptide 2790. .3467
FT /gene="pol"
FT /product="HAM1-like protein"
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SQ Sequence 3467 BP; 1088 A; 477 C; 806 G; 996 T; 100 other;
fj026002 Length: 3467 18-JUN-2009 Type: N Check: 4572 ..
1 ataaacatga cataagaata cataaagata catcgcatac aaacactgtg
51 cattcaaatt cgtgagaaag caagctgtta cgaaagttta caatacatcc
101 ttatatattc atagcactga atatctgcag atgtcgacta tccagctatt
151 caagactatc agatttggtt cctttgagcc tgtcaagctt gatgaaggaa
201 acaatgttat agagaaggtc ccaattgatc ttctggcagg aaatgatggc
251 tctggtcctg aggagcaatc ggaacagaaa taccatagga aagaaagcgg
301 tgaaagttgg cggaaagtaa ccgacttata ttctgtaatt ggaaattctg
351 tttactgccg cagttacgta gcaatgaaaa actttctcaa tgatacaaag
401 tggggaggtc ttttcaaaaa taagaagggg caagaactaa aggctgctgc
451 aaggctcaga agggctacaa gctatggatt catgtatgat ccagttgctt
501 gtgcctttga atgccctgtt tgcagaacaa aagctacagc attggaagca
551 tttacaagcg attgtgatca ttgtttcgaa gtcaagcaca ttgatgatga
601 taggatcgtt caaactgaaa caaagtttta tccaataaat cctattgaac
651 tggatgttga ggataactta gtggaagctg catcgctcga gtggttgaaa
701 ggtgaagtgg aagagagagt tgtagacagg gttttactac ttgaggacaa
751 ggagattcgt gttacaaaga aagctctagt caaaaggaga gctgagacaa
801 aactagtggc taacgttgct gatcttacca agaaattgac tgaaatttgc
851 tgtgagtctg gtatccctat cattgacatt gataacagca agaggaaagc
901 cattccgatg gtcaaactca agcatatctt tgggaaaatt gagtgtgatg
951 acatgtttgg ggaagatcgg tatttcctgg agcatagcaa tgcagggaaa
1001 attttccgat catgtgagag aattacttat aggatgattc gtcctggatg
1051 gagtggagca atcattctaa gagacaatgt tcagggagag gatcatgata
1101 agtttgactt tatcaatgat atttgtgttg ttcaagggaa gaatctaata
1151 agcaacaaaa ttgagaacgc catgcgcgtc aagactgaaa cagaaatgga
1201 cttaattgat ttgtattctt tcaatcttag ttgggcgaaa tcaaaagata
1251 agttcattaa gcactttgaa agtgatacaa ctcaattaat tagatcgtgt
1301 tgcactccta gtacattgtg gttgtacgca aggaaagcca ggttttacaa
1351 atttgtggat cacatgatct taaagggtag tccaataatt gatattctag
1401 ttaaaatgga gtatgttggc aaacatttgg atttgtttaa tagtgttgaa
1451 gatgtgtgca ctgagttttt ctcatttatg aaggagttaa ttagtgaaac
1501 tgtcaacgat aaatcagatc cagatgtgtt gcgcgttaga aatttgataa
1551 gagcgcattt tgagtcagtc ttagaataca ataagtatga gttgatagat
1601 aggataattg agaaaaaaac tcagttagaa gcacaagaaa ttatgtctcg
1651 cgagctcatc agacatcagt acggagaatt attttcttgg cgcgaacgtt
1701 tgtatttgaa actaggtata ggctcatcga atctctatac atactgggtg
1751 gaacgcgaag agaaacaatc agagaaatcg agtgcaatct cttgcatcat
1801 ttccaaaccg ggaatagaga tgttgatcaa ttgggtctca gaagtgtgta
1851 agagtaaata tcatagtctt gtaaattgtg tcgatagtgg tattttgttc
1901 ttgtggtcta gaatagttca tttagcgaga gtttcagttt atggttattg
1951 gaatctttgg tttagacaag ctatgtgtgt gttgttcatt ttcttagttt
2001 caaatttctc ttgtaaaata gttaattatc ttaagacatt aattgtgaat
2051 gagaagaagc tagcaataaa gaatgaagaa ggtttcgttg aagtacaagg
2101 ccgaaaagaa gagtcttttg ttttaaagtg gtgtgctgct gcaactctgt
2151 ttcttagttt tctaaactat gattgggcag ttggatgtgt atcagccatt
2201 ggaaagatga aaacaatatt tagtgcacta ggtccagatt tcatagaaaa
2251 gcaannnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2351 nnnngtgagt ataatccaga gtaggttcag agagttgttt tcagaatgtg
2401 gtttggatta taattttgat gatgttcaca agtcaataga gactattgag
2451 tatatgagcc attcattcat gctgaaagat gatgtgtaca ttccaaagtt
2501 gaagaaagaa agaattgttg caattcttga atgggagaga ggtgatgaga
2551 ttatgcgaac acggagtgct cttaatgctg cttatatcga aagttatgga
2601 tatgatgatc ttatggttga aattgagcgg tacgcggttt tctgggctac
2651 cgaaaaaggt tgtgagtatc cattattaga taggaagcgt gtggaaggac
2701 tttacaaaga tgatcacaca gatattaatg aagaatggct gagaggtatt
2751 ttaccaccat cattcgaaca ttgttatgtt gacacgcaaa ctaaggattt
2801 gagaagggaa gagcagcctg agttgagacc tgaaagttat gacagaacaa
2851 cccaaatgca gatgaagttc ccagttacat ttgtgacagg aaatttgggg
2901 aagttagctg aagtgaagtc tattcttggc attgcaaatg atgttatagc
2951 caggaacatt gatttaccag aagtgcaagg aaccccagat gagattgtga
3001 gaaagaaggc tcaattagca gtgaagatga ctaatagtcc tgttttagtc
3051 gaagacacgt gtctttgttt caatgctttt aatggactgc ctgggccata
3101 catcaaatgg tttttaaaag aattgggtct tgaaggtgtt gtcaaaatgc
3151 tgtcagcatt tggagataag tcagcgtacg cactatgtac atttgcatat
3201 gtgcacaatg agtcgtctga tccaattgtg tttaaaggag ttgtgaatgg
3251 tgaaattgtg ccaccgcgag gtaacaatgg ttttggttgg gatcctatat
3301 tcaaacctga tgaatgtagt tgtacgtttg cagaaatgtc aagcagcatg
3351 aagaatgatt tttcccatag aagaagagct ttagagaaag tcaaatcatt
3401 tcttgataac ttggtggtga agcaagagga gaagaaggca agggtggctc
3451 taacgattga tgttcag