Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak virus isolate HMA9 polyprotein (pol) gene, partial cds.
ACC No: FJ039521
Dated: 2009-06-18 | Length: 1275 | CRC: 2038960619
ID FJ039521; SV 1; linear; genomic RNA; STD; VRL; 1275 BP.
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AC FJ039521;
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DT 15-MAY-2009 (Rel. 100, Created)
DT 18-JUN-2009 (Rel. 101, Last updated, Version 2)
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DE Cassava brown streak virus isolate HMA9 polyprotein (pol) gene, partial
DE cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-1275
RX PUBMED; 19386713.
RA Mbanzibwa D.R., Tian Y., Mukasa S.B., Valkonen J.P.;
RT "Cassava brown streak virus (Potyviridae) encodes a putative Maf/HAM1
RT pyrophosphatase implicated in reduction of mutations and a P1 proteinase
RT that suppresses RNA silencing but contains no HC-Pro";
RL J. Virol. 83(13):6934-6940(2009).
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RN [2]
RP 1-1275
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Valkonen J.P.T.;
RT ;
RL Submitted (18-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL Applied Biology, University of Helsinki, Latokartnonkaari 7, Helsinki
RL 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1275
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="HMA9"
FT /mol_type="genomic RNA"
FT /country="Uganda"
FT /collection_date="2007"
FT /db_xref="taxon:137758"
FT gene <1. .>1275
FT /gene="pol"
FT CDS <1. .>1275
FT /codon_start=1
FT /gene="pol"
FT /product="polyprotein"
FT /protein_id="ACM48177.1"
FT /translation="GNNSGQPSTVVDNTIILMIVVEYCKAVMESEGREMQFKYMCNGDD
FT LILNCFDDEVSIIQSRFRELFSECGLDYNFDDVHKSIETIEYMSHSFMLKDDVYIPKLK
FT KERIVAILEWERGDEIMRTRSALNAAYIESYGYDDLMVEIERYAVFWATEKGCEYPLLD
FT RKRVEGLYKDDHTDINEEWLRGILPPSFEHCYVDTQTKDLRREEQPELRTESYDRTTQM
FT QMKFPVTFVTGNFGKLAEVKSILGIANDVIARNIDLPEVQGTPDEIVRKKAQLAVKMTN
FT SPVLVEDTCLCFNAFNGLPGPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFAYVHNE
FT SSDPIVFKGVVNGEIVPPRGNNGFGWDPIFKPDECSCTFAEMSSSMKNDFSHRRRALEK
FT VKSFLDNLVVKQEEKKARVALTIDVQ"
FT mat_peptide <1. .597
FT /gene="pol"
FT /product="NIb protein"
FT mat_peptide 598. .1275
FT /gene="pol"
FT /product="HAM1-like protein"
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SQ Sequence 1275 BP; 402 A; 172 C; 326 G; 375 T; 0 other;
fj039521 Length: 1275 18-JUN-2009 Type: N Check: 9923 ..
1 ggtaataaca gtggtcagcc ttctacagtt gtcgacaaca ctattatact
51 aatgattgtt gtggaatatt gcaaggctgt catggagagt gagggaagag
101 aaatgcaatt caagtacatg tgtaatggag atgacttgat tctcaattgt
151 tttgatgatg aagtgagtat aatccagagt aggttcagag agttgttttc
201 agaatgtggt ttggattata attttgatga tgttcataag tcaatagaga
251 ctattgagta tatgagccat tcattcatgc tgaaagatga tgtgtacatt
301 ccaaagttga agaaagaaag aattgttgca attcttgaat gggagagagg
351 tgatgagatt atgcgaacac ggagtgctct taatgctgct tatatcgaaa
401 gttatggata tgatgatctt atggttgaaa ttgagcggta cgcggttttc
451 tgggctaccg aaaaaggttg tgagtatcca ttactagata ggaagcgtgt
501 ggaaggactt tacaaagatg atcacacaga tattaatgaa gaatggctga
551 gaggtatttt accaccatca ttcgagcatt gttatgttga cacgcaaact
601 aaggatttga gaagggaaga gcagcctgag ttgagaactg aaagttatga
651 cagaacaacc caaatgcaga tgaagttccc agttacattt gtgacaggaa
701 attttggaaa gttagctgaa gtgaagtcta ttcttggcat tgcaaatgat
751 gttatagcta ggaacattga tttaccagaa gtgcaaggaa ccccagatga
801 gattgtgaga aagaaggctc aattagcagt gaagatgact aatagtcctg
851 ttttagtcga agacacgtgt ctttgtttca atgcttttaa tggactgcct
901 gggccataca tcaaatggtt tctaaaagaa ttgggtcttg aaggtgttgt
951 caaaatgctg tcagcatttg gagataagtc agcatacgca ctatgtacat
1001 ttgcatatgt gcacaatgag tcgtctgatc caattgtgtt taaaggagtt
1051 gtgaatggtg aaattgtgcc accgcgaggt aacaatggtt ttggttggga
1101 tcctatattc aaacctgatg aatgtagttg cacgtttgca gaaatgtcaa
1151 gcagcatgaa gaatgatttt tcccatagaa gaagagcttt agagaaagtc
1201 aaatcgtttc ttgataactt ggtggtgaag caagaggaga agaaggcaag
1251 ggtggctcta acgattgatg ttcag