Sequence of DPV Mesta yellow vein mosaic virus
Mesta yellow vein mosaic virus-[India:Bongaon:2008] segment DNA A, complete sequence.
ACC No: FJ159262
Dated: 2009-04-11 | Length: 2752 | CRC: 345351663
ID FJ159262; SV 1; circular; genomic DNA; STD; VRL; 2752 BP.
XX
AC FJ159262;
XX
DT 28-SEP-2008 (Rel. 97, Created)
DT 11-APR-2009 (Rel. 100, Last updated, Version 3)
XX
DE Mesta yellow vein mosaic virus-[India:Bongaon:2008] segment DNA A, complete
DE sequence.
XX
KW .
XX
OS Mesta yellow vein mosaic virus-[India:Bongaon:2008]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2752
RA Roy A., Acharyya S., Das S., Ghosh R., Paul S., Srivastavab R.M.,
RA Ghosh S.K.;
RT "Distribution, epidemiology and molecular variability of the begomovirus
RT complexes associated with yellow vein mosaic disease of mesta in India";
RL Virus Res. 141(2):237-246(2009).
XX
RN [2]
RP 1-2752
RA Das S., Ghosh R., Acharyya S., Paul S., Palit P., Das A., Roy A.,
RA Ghosh S.K.;
RT ;
RL Submitted (25-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL Crop Protection, Central Research Institute for Jute and Allied Fibres,
RL Barrackpore, Kolkata, West Bengal 700120, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2752
FT /organism="Mesta yellow vein mosaic
FT virus-[India:Bongaon:2008]"
FT /segment="DNA A"
FT /host="Hibiscus cannabinus"
FT /isolate="Bongaon:East India"
FT /mol_type="genomic DNA"
FT /country="India:East India, Bongaon"
FT /clone="EI-FL-20"
FT /db_xref="taxon:562943"
FT gene 132. .479
FT /gene="AV2"
FT CDS 132. .479
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /db_xref="GOA:B6DRQ0"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B6DRQ0"
FT /protein_id="ACI06012.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL
FT ISILRCRNYVEASCRYRHFYPRVEGASSTELRQPVCNPCSCPHCPRHKVSYVGEQAHVS
FT EAQNVQDVQKP"
FT gene complement(271. .600)
FT /gene="AC5"
FT CDS complement(271. .600)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5 protein"
FT /db_xref="InterPro:IPR013671"
FT /db_xref="UniProtKB/TrEMBL:B6DRQ1"
FT /protein_id="ACI06018.1"
FT /translation="MGQPNTPSNIRKTNNLTHVTNIILRIKRLHLTWAFTSLRNIRASV
FT HPVHSGLPIHGPVRPHTRLCDADSGGNCTGCIRAVEVQSTTHLRRGGRNDDIGSSLRHN
FT SYNVR"
FT gene 292. .1062
FT /gene="AV1"
FT CDS 292. .1062
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:B6DRQ2"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:B6DRQ2"
FT /protein_id="ACI06013.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFDSPYATRAVAPTVRVTKSRMWA
FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR
FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP
FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH
FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN"
FT gene complement(1028. .1468)
FT /gene="AC3"
FT /gene_synonym="ren"
FT CDS complement(1028. .1468)
FT /codon_start=1
FT /gene="AC3"
FT /gene_synonym="ren"
FT /product="replication enhancer protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B6DRQ3"
FT /protein_id="ACI06016.1"
FT /translation="MDLRTGEPITAAQAWSGAYIWEVPNPLYFKILSHEDRPYSSNMDI
FT ITVRIQFNYNLRRALGVHKCFLTFRVWTTLHPPTGLFLTVFKTQVLKYLKNLGGISINA
FT IIRAVDHVLYNKLEQTMYVDQYSEIKFDLYNINSLQSRRSNS"
FT gene complement(1161. .1613)
FT /gene="AC2"
FT /gene_synonym="trap"
FT CDS complement(1161. .1613)
FT /codon_start=1
FT /gene="AC2"
FT /gene_synonym="trap"
FT /product="transcription activator protein"
FT /db_xref="GOA:B6DRQ4"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B6DRQ4"
FT /protein_id="ACI06015.1"
FT /translation="MQSSSPLKDHCTQVPIKVQHREAKRRNRRKRVDLECGCSYYLSIN
FT CFNHGFTHRGTHHCSSSMEWRLYLGSSKPPLFQNPQPRGPSLFEQHGHNNSQDPIQLQP
FT SESSGSAQVFSDLPGLDDLTPSDWSFLNGIQNPSAQVSQKSGWNLN"
FT gene complement(1510. .2598)
FT /gene="AC1"
FT /gene_synonym="rep"
FT CDS complement(1510. .2598)
FT /codon_start=1
FT /gene="AC1"
FT /gene_synonym="rep"
FT /product="replication initiator protein"
FT /db_xref="GOA:B6DRQ5"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="UniProtKB/TrEMBL:B6DRQ5"
FT /protein_id="ACI06014.1"
FT /translation="MPPRRNGIYSKNYFVTYPKCSLTKEEALSQLLNLQTPTSKKYIKI
FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYID
FT KDGDILEWGKFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN
FT LNANLDRIFQEPPAPYVSPFSSSSFNQVPEELEEWASENVVDAAARPLRPQSIVIEGDS
FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQ
FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLEEEKNTALKNWAVKNAIFVTLEGPLY
FT SGTNQSTAQGSEETQQEEESRS"
FT gene complement(2142. .2450)
FT /gene="AC4"
FT CDS complement(2142. .2450)
FT /codon_start=1
FT /gene="AC4"
FT /product="regulatory protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:B6DRQ6"
FT /protein_id="ACI06017.1"
FT /translation="MKMGLLTCMFSSSSRGNSSARICDSSTWSPQTDQHISIRTYRELN
FT PAPTSSPTSTRTGTFSNGANFRSTEGQQEEGSRQPTTLTPQHLTREVSQRLLESLRN"
XX
SQ Sequence 2752 BP; 701 A; 573 C; 637 G; 841 T; 0 other;
fj159262 Length: 2752 11-APR-2009 Type: N Check: 61 ..
1 accggatggc cgcgcgattt ttttgtggtc ccctccacta actcttgtcg
51 gccaatcata tgacgcgctc aaagcttaaa taaatttcct gcctattata
101 agtacttcgt cgctaagttc ttgtttgaaa aatgtgggat ccacttttaa
151 acgagttccc cgagacggtt cacgggtttc gttgcatgct tgctatcaaa
201 tatcttcaac aattgtctga ggaatactcc cctgatacgg ttgggtacga
251 tctaattcgc gatttaattt ctatcttacg ttgtaggaat tatgtcgaag
301 cgagctgccg atatcgtcat ttctaccccc gcgtcgaagg tgcgtcgtcg
351 actgaacttc gacagcccgt atgcaacccg tgcagttgcc cccactgtcc
401 gcgtcacaaa gtctcgtatg tgggcgaaca ggcccatgta tcggaagccc
451 agaatgtaca ggatgtacag aagccctgat gttcctaagg gatgtgaagg
501 cccatgtaag gtgcagtctt ttgatgcgaa gaatgatatt ggtcacatgg
551 gtaaggttat ttgtctttct gatgttacta ggggtattgg gctgacccat
601 cgagtaggga aacgtttctg cgtgaagtca ttgtattttg ttggcaaaat
651 ttggatggac gagaacatca agaccaagaa ccatacgaat actgttatgt
701 tttggattgt tagagatagg cgtccttcag gaaccccaaa cgatttccag
751 caagtgttca atgtttatga taacgagccc tctacggcta ctgtgaagaa
801 cgaccagcgt gatcgttttc aggtgttgag gaggtttcaa gcaacagtca
851 caggtggtca atatgctgct aaggaacaag ctataattag gaaattctat
901 cgtgttaaca attatgtggt gtataatcac caggaagctg ggaagtatga
951 gaatcacact gagaatgctt tgttgttgta tatggcatgt actcatgcct
1001 ctaaccctgt gtatgctact ttgaaagtta ggagttactt ctacgactct
1051 gtaacgaatt gatattataa agatcgaatt ttatttctga atattgatct
1101 acatacatag tttgttccaa tttattatac aatacatgat ctactgctct
1151 aataattgcg ttaattgaga ttccacccag atttttgaga tacttgagca
1201 cttgggtttt gaataccgtt aagaaaagac cagtcggagg gtgtaaggtc
1251 gtccagaccc ggaaggtcag aaaacacttg tgcactccca gagctctccg
1301 aaggttgtag ttgaattgga tcctgactgt tattatgtcc atgttgctcg
1351 aataaggacg gtcctcgtgg ctgaggattt tgaaatagag ggggtttgga
1401 acttcccaga tataggcgcc actccatgct tgagctgcag tgatgggttc
1451 ccctgtgcgt aaatccatgg ttgaagcagt taattgatag gtaataagaa
1501 cacccgcatt caagatctac tctcttcctc ctgttgcgtc tcttcgcttc
1551 cctgtgctgt actttgattg gtacctgagt acagtggtcc ttcaagggtg
1601 acgaagattg cattcttcac tgcccagttt ttgagtgcgg tgttcttttc
1651 ctcctccaga aattctttat aactgctgtt gggaccagga ttgcagagga
1701 agattgttgg tattccgcct ttaatttgaa ctggcttccc gtacttggta
1751 ttggattgcc agtccctttg ggcccccatg aactctttaa agtgcttgag
1801 gaagtgcgga tctacgtcat caatgacgtt ataccatgcg tcgttactgt
1851 acacctttgg actaagatct aagtgcccac acagatagtt atgtgggcct
1901 aaagacctag cccacattgt cttcccagta cgactatctc cctcaattac
1951 tatactttga ggtctcaggg gccgcgcagc ggcgtcgaca acattttccg
2001 acgcccactc ttcaagttct tctggaactt gattgaaaga agaagaggaa
2051 aaaggagaaa cataaggagc tggtggctcc tgaaatatcc tgtctagatt
2101 tgcatttaaa ttatgaaatt gtagtacaaa atctttagga gctagttcct
2151 taatgactct aagagcctct gacttacttc ccgcgttaag tgctgcggcg
2201 taagcgtcgt tggctgtctg ctgccctcct cttgctgacc ttccgtcgat
2251 ctgaaatttg ccccattcga gaatgtcccc gtccttgtcg atgtaggact
2301 tgacgtcgga gctggattta gctccctgta tgttcggatg gaaatgtgct
2351 gatctgtttg gggagaccaa gtcgaagaat cgcatattct ggcacttgaa
2401 tttcccctcg aactggatga gaacatgcaa gtgaggagtc ccatcttcat
2451 gaagctctct gcagatttta atatattttt ttgaagttgg ggtttggaga
2501 tttaataatt gggaaagtgc ttcctctttg gtgagagaac atttgggata
2551 agtgacgaaa tagtttttgg aataaatacc gttacgcctt ggaggcatgt
2601 tgactagaat tgatcaccga ttgaccgctc ttgcaactct ctcctgtata
2651 tcggtgatca atatatagtg atcaccaaat ggcataatgg taataaaaca
2701 acttttattt gaaattcgaa aaaaaaattt ttgcggccat ccgcttaata
2751 tt