Sequence of DPV Prunus necrotic ringspot virus

Prunus necrotic ringspot virus isolate ChrT43 coat protein (CP) mRNA, complete cds.

ACC No: FJ231732

Dated: 2012-09-03 | Length: 675 | CRC: -1897370213

                
ID   FJ231732; SV 1; linear; mRNA; STD; VRL; 675 BP.
XX
AC   FJ231732;
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DT   02-OCT-2009 (Rel. 102, Created)
DT   03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE   Prunus necrotic ringspot virus isolate ChrT43 coat protein (CP) mRNA,
DE   complete cds.
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KW   .
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OS   Prunus necrotic ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Ilarvirus.
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RN   [1]
RP   1-675
RX   DOI; 10.1094/PDIS-93-6-0599.
RX   AGRICOLA; IND44241176.
RA   Oliver J.E., Freer J., Andersen R.L., Cox K.D., Robinson T.L., Fuchs M.;
RT   "Genetic Diversity of Prunus necrotic ringspot virus Isolates Within a
RT   Cherry Orchard in New York";
RL   Plant Dis. 93(6):599-606(2009).
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RN   [2]
RP   1-675
RA   Oliver J.E., Freer J., Andersen R.L., Robinson T.L., Cox K., Fuchs M.;
RT   ;
RL   Submitted (23-SEP-2008) to the INSDC.
RL   Plant Pathology and Plant-Microbe Biology, Cornell University, 630 W. North
RL   Street, Geneva, NY 14456, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .675
FT                   /organism="Prunus necrotic ringspot virus"
FT                   /host="Prunus avium L."
FT                   /isolate="ChrT43"
FT                   /mol_type="mRNA"
FT                   /country="USA"
FT                   /collection_date="24-Apr-2007"
FT                   /db_xref="taxon:37733"
FT   gene            1. .675
FT                   /gene="CP"
FT   CDS             1. .675
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:C9WAK7"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:C9WAK7"
FT                   /protein_id="ACO52355.1"
FT                   /translation="MVCRICNHTHAGGCRSCNKCHPNGALVPLRAQQRAANNPNRNPNR
FT                   ASSGTGPVVRPQPVVKTTWTVRGPNVPPRIPKGFVAHNHREVTTTEAVKYLSIDFTTTL
FT                   PQLMGQNLTLLTVIVRMNSMSSNGWIGMVEDYKVEQPDGPNALSRKGFLKDQPRGWQFE
FT                   PPSDLDFDTFARTHRVVIEFKTEVPAGAKVLVRDLYVVVSDLPRVQIPTDVLLVDEDLL
FT                   EI"
XX
SQ   Sequence 675 BP; 164 A; 157 C; 190 G; 164 T; 0 other;

fj231732 Length: 675  03-SEP-2012  Type: N  Check: 7594  ..

       1  atggtttgcc gaatttgcaa tcatacccac gctggtggat gccgttcttg
      51  caacaagtgc catccgaatg gagctctggt cccactcagg gctcaacaga
     101  gggctgcgaa taacccgaat agaaacccga atagggcttc gagtggtacc
     151  ggaccagtgg tccgaccaca gccggtcgtg aagaccacct ggaccgtgag
     201  aggtccgaat gtgcctcccc gaattcctaa ggggtttgta gcacacaatc
     251  accgagaggt gacgacgaca gaggcagtga agtacttgag catagacttc
     301  acgaccactc tccctcagtt gatgggtcag aatttgaccc tattgactgt
     351  tatagtccga atgaactcta tgagttcgaa tggttggatt gggatggtgg
     401  aggactataa ggtggaacaa cctgatggtc cgaatgccct gtctaggaag
     451  ggtttcttga aggaccaacc gagaggttgg cagttcgaac ctccttccga
     501  tttagatttc gacacttttg cgcgtacgca tcgtgtcgtt atcgaattca
     551  agaccgaagt gcccgctggg gccaaggtct tggttaggga tttgtacgta
     601  gtggtaagtg atttaccacg agtgcaaatt ccgactgatg tcttgctggt
     651  cgatgaagac ctgcttgaga tctag