Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate PMU08/42 triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and capsid protein (CP) genes, complete cds.
ACC No: FJ263325
Dated: 2009-11-18 | Length: 1921 | CRC: 1519525894
ID FJ263325; SV 1; linear; genomic RNA; STD; VRL; 1921 BP.
XX
AC FJ263325;
XX
DT 02-OCT-2009 (Rel. 102, Created)
DT 18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE Pepino mosaic virus isolate PMU08/42 triple gene block protein 1 (TGBp1),
DE triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3),
DE and capsid protein (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-1921
RX PUBMED; 19759144.
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT dynamics of this emergent virus";
RL J. Virol. 83(23):12378-12387(2009).
XX
RN [2]
RP 1-1921
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT ;
RL Submitted (29-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL Murcia Apdo. Correos 164 30100, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .1921
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="PMU08/42"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="Apr-2008"
FT /note="EU type acronym: PepMV"
FT /db_xref="taxon:112229"
FT gene 1. .705
FT /gene="TGBp1"
FT CDS 1. .705
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /db_xref="UniProtKB/TrEMBL:C9WBU0"
FT /protein_id="ACO59298.1"
FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC
FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT PTIGELNARSNS"
FT gene 686. .1057
FT /gene="TGBp2"
FT CDS 686. .1057
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q8JJH7"
FT /protein_id="ACO59299.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT SCYNTHSATNNTQPLSGHH"
FT gene 909. .1163
FT /gene="TGBp3"
FT CDS 909. .1163
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /db_xref="UniProtKB/TrEMBL:C9WBU2"
FT /protein_id="ACO59300.1"
FT /translation="MSSYLSSFSRWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT QVTIDGAAIVITNCENTPELLKAINFSPWNGLSFPKFEN"
FT gene 1208. .1921
FT /gene="CP"
FT CDS 1208. .1921
FT /codon_start=1
FT /gene="CP"
FT /product="capsid protein"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q8JJF2"
FT /protein_id="ACO59301.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 1921 BP; 565 A; 482 C; 346 G; 528 T; 0 other;
fj263325 Length: 1921 18-NOV-2009 Type: N Check: 1927 ..
1 atggaaagat caactctgat taatttactt caattgcacc acttcgagcc
51 aaaactcagt gttgaaggaa tcatagttgt gcacggaatt gcaggcactg
101 ggaaaaccac tttacttagg actttatttt ctgcttaccc tagcttagtt
151 ataggttcac ctaggccttg ctatttagat aaacaaaaca aaatttcaca
201 agtttgctta tcttgctttc ccaataccca ttgtgatatt gtcgatgagt
251 atcatttgct agaaagtttt ctagaaccaa aattggctat ctttggtgac
301 ccctgtcaat gcacatacat tgagagactt agagtcccac attacacttc
351 cttcagaact catagatttg gaaagtcaac tgctgagatt ttgaacaaac
401 tgtttgacct taatatagtc tcagttaaga aagaagacga catcgttgaa
451 ttctttaacc cttttgaagt tgaccccact gagcatatct ctgcctctga
501 agaagaagtc ttggactttg tttctgacca agtggtgacc actagctcag
551 aggaactagc aggacttgag tttgcagaaa caactttcta ctgcacaaca
601 ttggccgcag ctgttgctga aaatcctgct aagactttca tctctctgac
651 tagacacacc cacaaaccca ccattgggga actaaatgcc aggtctaact
701 cctagagctg acctcactga cacatacaaa atcattgcca ttgctttctt
751 gttgtcagct tgcatttact tccaaaatag ccactaccaa cctgttgctg
801 gagacaactt gcaccgtttg ccttttggtg gccaatatca agacggcacc
851 aaaaagatat cttattttcc acaacagcag tcatactttc attctggaaa
901 caaattaaat gtcctcatac ttatcttcat tctcacgttg ggtattgtcc
951 tcaccaataa atttagtttt agctttagtc gtactactca ccagcattct
1001 tgctataaca cacattcagc aaccaacaat acacaaccat tgtcaggtca
1051 ccattgacgg ggctgcaata gtcataacaa attgtgagaa cacaccagaa
1101 ttgcttaaag caatcaactt ctccccttgg aacgggttaa gttttcctaa
1151 atttgaaaat taaaattaat attgagtgtt cacaaaaatc aacttcaata
1201 aacaatcatg cctgacacaa cacctgttgc tgccacttca agtgcaccac
1251 ccacagccaa agatgctggt gccaaagctc cttctgactt ctcaaatccc
1301 aatacagctc ctagtctcag tgatttgaag aaagtcaagt atgtctccac
1351 cgtgacctcc gtggccacac cagctgaaat tgaagcccta ggcaaaatct
1401 tcaccgctat gggccttgcc gccaatgaga ctggtccggc catgtgggat
1451 ctagctcgtg catatgctga tgtgcagagt tctaaatcgg cacagctgat
1501 tggagctacc ccttccaacc ctgcactatc acgccgagcc cttgctgctc
1551 agtttgatcg aatcaatata acccccaggc aattttgcat gtactttgcc
1601 aaagttgttt ggaacatact tctcgacagc aacattccac cagcaaattg
1651 ggccaaactt ggttaccaag aagatacaaa atttgctgca tttgacttct
1701 tcgatggagt caccaaccct gccagcctgc agcctgctga tggtcttatc
1751 aggcagccaa atgagaaaga actagctgct cactccgtag ctaagtacgg
1801 cgccttggct aggcaaaaga tctccacagg taattatatt accacacttg
1851 gagaagtcac acgtggacac atgggaggag ctaacaccat gtacgcgata
1901 gacgcacccc ctgaacttta a