Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate PMU06/22 triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and capsid protein (CP) genes, complete cds.
ACC No: FJ263346
Dated: 2009-11-18 | Length: 1915 | CRC: -1821085362
ID FJ263346; SV 1; linear; genomic RNA; STD; VRL; 1915 BP.
XX
AC FJ263346;
XX
DT 02-OCT-2009 (Rel. 102, Created)
DT 18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE Pepino mosaic virus isolate PMU06/22 triple gene block protein 1 (TGBp1),
DE triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3),
DE and capsid protein (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-1915
RX PUBMED; 19759144.
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT dynamics of this emergent virus";
RL J. Virol. 83(23):12378-12387(2009).
XX
RN [2]
RP 1-1915
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT ;
RL Submitted (29-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL Murcia Apdo. Correos 164 30100, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .1915
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="PMU06/22"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="May-2006"
FT /note="CH2 type acronym: PepMV"
FT /db_xref="taxon:112229"
FT gene 1. .705
FT /gene="TGBp1"
FT CDS 1. .705
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /db_xref="UniProtKB/TrEMBL:C9WC22"
FT /protein_id="ACO59380.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKVSQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETKSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT gene 686. .1057
FT /gene="TGBp2"
FT CDS 686. .1057
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT /protein_id="ACO59381.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT gene 909. .1157
FT /gene="TGBp3"
FT CDS 909. .1157
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q334E8"
FT /protein_id="ACO59382.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT gene 1202. .1915
FT /gene="CP"
FT CDS 1202. .1915
FT /codon_start=1
FT /gene="CP"
FT /product="capsid protein"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT /protein_id="ACO59383.1"
FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 1915 BP; 561 A; 469 C; 342 G; 543 T; 0 other;
fj263346 Length: 1915 18-NOV-2009 Type: N Check: 5658 ..
1 atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca
51 caagattaac actgaaggaa tcattgttgt gcacggaatt gctggaactg
101 ggaaaaccac attgcttagg acattatttt ctgcataccc tagcttagtt
151 ataggttcac ctaggccttg ttacttggat aaagctaata aagtttcaca
201 agtttgcctt tcttgttttc caaatacctt gtgtgacatt gttgacgagt
251 accatctctt agaaagtttt cctgaaccaa aactagccat ttttggtgac
301 ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc
351 cttcagaaca caccgatttg gcaaatccac tgctgctcta ctaaacaagt
401 tatttgatct caacattgag tcagtcaaag cacaagacga cacagtagaa
451 tactttgatc ctttcgcagt ggacccctct gaacacattt ctgcttcaga
501 aaaagaagtt ttggaatttg taggtgatca agttgagact aaaagctctg
551 aagaactagc tggtctcgag tttagtgaag ttactttcta ctgtaccaca
601 cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac
651 tagacacact tcaaagctca caattggtga actaaatgcc aggtctgact
701 cctagagctg atcttactga cacgtataaa atcattgcta tagcctttct
751 actgtcagct tgcatttact tccaaaacag tcattatcaa ccagttgcag
801 gtgataattt gcacagacta ccctttggtg gtcagtatca agacggaact
851 aagaagattt cttactttcc gcagcaacaa tcctactttc actcaggaaa
901 caagcttaat gtcctcatac ttatcttcat tcttacactg ggtattgtcc
951 tcaccaataa atttagtttt agcattagcc gtaatactca ccagcatcat
1001 tgctacaaca cacattctgc aacccaaaca ggtcaatcag tgccaggtca
1051 tcattgacgg tgcagccata gttataacaa attgtccaaa cacacccgaa
1101 gttcttaaag caatcaactt ctccccttgg aacgggttaa gttttcctca
1151 attgtgaaat catattgtta tctagttaaa ttcaaacaat ttaactcaac
1201 tatggaaaac caacccacag cttctaaccc atcagatgta ccaccaactg
1251 ctgctcaagc tggtgcccag agcccagccg acttctcaaa tcctaataca
1301 gctccttccc taagtgattt gaagaagatc aaatacgtgt caactgtcac
1351 ttcagttgcc acgcctgctg aaattgaggc ccttggcaag atctttactg
1401 ccatgggttt agcagccaat gagaccggac ctgccatgtg ggacctcgct
1451 cgtgcttatg ctgatgtgca aagttcaaaa tctgcacaac ttataggtgc
1501 cacaccatcc aaccctgctt tgtctagacg tgcacttgct gcacagtttg
1551 atcgtatcaa tatcacaccc agacaattct gcatgtattt tgcaaaaatt
1601 gtttggaaca tactgttaga cagcaatgtg ccacctgcca actgggcaaa
1651 attgggctat caggaagata ccaagtttgc tgcttttgac ttctttgatg
1701 gagtcacaaa tccagctagt ctacagcctg cagatggcct aatcaggcag
1751 cccaatgaaa aagagcttgc tgctcactcg gttgctaaat atggtgccct
1801 tgcccgccag aaaatatcca ctggtaacta catcaccacc cttggtgaag
1851 ttacacgtgg tcacatgggc ggcgccaaca ctatgtacgc aattgatgcg
1901 cctcctgaac tttaa