Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate PMU06/24 nonfunctional triple gene block protein 1 (TGBp1) gene, complete sequence; and triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and capsid protein (CP) genes, complete cds.
ACC No: FJ263348
Dated: 2009-11-18 | Length: 1915 | CRC: -816256898
ID FJ263348; SV 1; linear; genomic RNA; STD; VRL; 1915 BP.
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AC FJ263348;
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DT 02-OCT-2009 (Rel. 102, Created)
DT 18-NOV-2009 (Rel. 102, Last updated, Version 2)
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DE Pepino mosaic virus isolate PMU06/24 nonfunctional triple gene block
DE protein 1 (TGBp1) gene, complete sequence; and triple gene block protein 2
DE (TGBp2), triple gene block protein 3 (TGBp3), and capsid protein (CP)
DE genes, complete cds.
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KW .
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OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
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RN [1]
RP 1-1915
RX PUBMED; 19759144.
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT dynamics of this emergent virus";
RL J. Virol. 83(23):12378-12387(2009).
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RN [2]
RP 1-1915
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT ;
RL Submitted (29-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL Murcia Apdo. Correos 164 30100, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .1915
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="PMU06/24"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="May-2006"
FT /note="CH2 type acronym: PepMV"
FT /db_xref="taxon:112229"
FT gene 1. .704
FT /gene="TGBp1"
FT misc_feature 1. .704
FT /gene="TGBp1"
FT /note="nonfunctional triple gene block protein 1 due to
FT mutation"
FT gene 685. .1056
FT /gene="TGBp2"
FT CDS 685. .1056
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT /protein_id="ACO59388.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT gene 908. .1156
FT /gene="TGBp3"
FT CDS 908. .1156
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q334E8"
FT /protein_id="ACO59389.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT gene 1202. .1915
FT /gene="CP"
FT CDS 1202. .1915
FT /codon_start=1
FT /gene="CP"
FT /product="capsid protein"
FT /db_xref="UniProtKB/TrEMBL:C9WC29"
FT /protein_id="ACO59390.1"
FT /translation="METQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 1915 BP; 563 A; 470 C; 337 G; 545 T; 0 other;
fj263348 Length: 1915 18-NOV-2009 Type: N Check: 7312 ..
1 atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca
51 taagattaac actgaaggaa tcattgttgt gcacggaatt gctggaactg
101 ggaaaaccac attgcttagg actttatttt ctgcataccc tagcttagtt
151 ataggttcac ctaggccttg ttacctagat aaagctaata aaatttcaca
201 agttgccttt cttgttttcc caataccttg tgtgacattg ttgacgagta
251 ccatctctta gaaagttttc ctgaaccaaa actagccatt tttggtgacc
301 cctgtcagtg cacttacatt gaaaggttga gaacacccaa ctacacatcc
351 ttcagaacac accgatttgg caaatccact gctgctctac taaacaagtt
401 atttgatctt aacattgagt cagtcaaagc acaagacgac acagtagaat
451 actttgatcc tttcgcagtg gacccctctg aacacatttc tgcttcagaa
501 aaagaagttt tggaatttgt aggtgatcaa gttgagacta caagctctga
551 agaactagct ggtctcgagt ttagtgaagt tactttctac tgtaccacac
601 ttgctggtgc tgttcaagaa aatcctgcca aaaccttcat ttcactcact
651 agacacactt caaagctcac aattggtgaa ctaaatgcca ggtctgactc
701 ctagagctga tcttactgac acgtataaaa tcattgctat agcctttcta
751 ctgtcagctt gcatttactt ccaaaacagt cattatcaac cagttgcagg
801 tgataatttg cacagactac cctttggtgg tcagtatcaa gacggaacta
851 agaagatttc ttactttccg cagcaacaat cctactttca ctcaggaaac
901 aagcttaatg tcctcatact tatcttcatt cttacactgg gtattgtcct
951 caccaataaa tttagtttta gcattagccg taatactcac cagcatcatt
1001 gctacaacac acattctgca acccaaacag gtcaatcagt gccaggtcat
1051 cattgacggt gcagccatag ttataacaaa ttgtccaaac acacccgaag
1101 ttcttaaagc aatcaacttc tccccttgga acgggttaag ttttcctcaa
1151 ttgtgaaatc atatttgtta tctagttaaa ttcaaacaat ttaactcaac
1201 tatggaaacc caaccaacag cttctaaccc atcagatgta ccaccaactg
1251 ctgctcaagc tggtgcccag agcccagccg acttctcaaa tcctaataca
1301 gctccttccc taagtgattt gaagaagatc aaatacgtgt caactgtcac
1351 ttcagttgcc acgcctgctg aaattgaggc ccttggcaaa atctttactg
1401 ccatgggttt agcagccaat gagaccggac ctgccatgtg ggacctcgct
1451 cgtgcttatg ctgatgtgca aagttcaaaa tctgcacaac ttataggtgc
1501 cacaccatcc aaccctgctt tgtctagacg tgcacttgct gcacagtttg
1551 atcgtatcaa tatcacaccc agacaattct gcatgtattt tgcaaaaatt
1601 gtttggaaca tactgttaga cagcaatgta ccacctgcca actgggcaaa
1651 attgggctat caggaagata ccaagtttgc tgcttttgac ttctttgatg
1701 gagtcacaaa tccagctagt ctacagcctg cagatggcct aatcaggcag
1751 cccaatgaaa aagagcttgc tgctcactcg gttgctaaat atggtgccct
1801 tgcccgccag aaaatatcca ctggtaacta catcaccacc cttggtgaag
1851 ttacacgtgg tcacatgggc ggcgccaaca ctatgtacgc aattgatgca
1901 cctcctgaac tttaa