Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate PMU07/30 triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and capsid protein (CP) genes, complete cds.
ACC No: FJ263352
Dated: 2009-11-18 | Length: 1916 | CRC: 76596391
ID FJ263352; SV 1; linear; genomic RNA; STD; VRL; 1916 BP.
XX
AC FJ263352;
XX
DT 02-OCT-2009 (Rel. 102, Created)
DT 18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE Pepino mosaic virus isolate PMU07/30 triple gene block protein 1 (TGBp1),
DE triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3),
DE and capsid protein (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-1916
RX PUBMED; 19759144.
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT dynamics of this emergent virus";
RL J. Virol. 83(23):12378-12387(2009).
XX
RN [2]
RP 1-1916
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT ;
RL Submitted (29-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL Murcia Apdo. Correos 164 30100, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .1916
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="PMU07/30"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="Mar-2007"
FT /note="CH2 type acronym: PepMV"
FT /db_xref="taxon:112229"
FT gene 1. .705
FT /gene="TGBp1"
FT CDS 1. .705
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /db_xref="UniProtKB/TrEMBL:C9WC44"
FT /protein_id="ACO59402.1"
FT /translation="MERSTLINLLLLHKFELKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT gene 686. .1057
FT /gene="TGBp2"
FT CDS 686. .1057
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT /protein_id="ACO59403.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT gene 909. .1157
FT /gene="TGBp3"
FT CDS 909. .1157
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /db_xref="UniProtKB/TrEMBL:C9WC46"
FT /protein_id="ACO59404.1"
FT /translation="MSSYLSSFLHWVSSSPINLVLALAVILTSIIATTHILQPRQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT gene 1203. .1916
FT /gene="CP"
FT CDS 1203. .1916
FT /codon_start=1
FT /gene="CP"
FT /product="capsid protein"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT /protein_id="ACO59405.1"
FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 1916 BP; 559 A; 470 C; 341 G; 546 T; 0 other;
fj263352 Length: 1916 18-NOV-2009 Type: N Check: 49 ..
1 atggaaagat caactttgat caatttactt ctgttacaca aatttgaact
51 caagattaac actgaaggaa tcattgttgt gcacggaatt gctggaactg
101 ggaaaaccac attgcttagg actttatttt ctgcataccc tagcttagtt
151 ataggttcac ctaggccttg ttacttagat aaagctaata aaatttcaca
201 agtttgcctt tcttgttttc caaatacctt gtgtgacatt gttgacgagt
251 accatctctt agaaagtttt cctgaaccaa aactagccat ttttggtgac
301 ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc
351 cttcagaaca caccgatttg gcaaatccac tgctgctcta ctaaacaagt
401 tatttgatct taacattgag tcagtcaaag cacaagacga cacagtagaa
451 tactttgatc ctttcgcagt ggacccctct gaacacattt ctgcttcaga
501 aaaagaagtt ttggaatttg taggtgatca agttgagact acaagctctg
551 aagaactagc cggtctcgag tttagtgaag ttactttcta ctgtaccaca
601 cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac
651 tagacacact tcaaagctca caattggtga actaaatgcc aggtctgact
701 cctagagctg atcttactga cacgtataaa atcattgcta tagcctttct
751 actgtcagct tgcatttact tccaaaacag tcattatcaa ccagttgcag
801 gtgataattt gcacagacta ccctttggtg gtcagtatca agacggaact
851 aagaagattt cttactttcc gcagcaacaa tcctactttc actcaggaaa
901 caagcttaat gtcctcatac ttatcttcat tcttacactg ggtatcgtcc
951 tcaccaataa atttagtttt agcattagcc gtaatactca ccagcatcat
1001 tgctacaaca cacattctgc aacccagaca ggtcaatcag tgccaggtca
1051 tcattgacgg tgcagccata gttataacaa attgtccaaa cacacccgaa
1101 gttcttaaag caatcaactt ctccccttgg aacgggttaa gttttcctca
1151 attgtgaaat catatttgtt atctagttaa atttgaacaa tttaactcaa
1201 ctatggaaaa ccaacctaca gcttctaacc catcagatgt accaccaact
1251 gctgctcaag ctggtgccca gagcccagcc gacttctcaa atcctaatac
1301 agctccttcc ctaagtgatt tgaagaagat caaatacgtg tcaactgtca
1351 cttcagttgc cacgcctgct gaaattgagg cccttggcaa gatctttact
1401 gccatgggtt tagcagccaa tgagaccgga cctgccatgt gggacctcgc
1451 tcgtgcttat gctgatgtgc aaagttcaaa atctgcacaa cttataggtg
1501 ccacaccatc caaccctgct ttgtctagac gtgcacttgc cgcacagttt
1551 gatcgtatca atatcacacc cagacaattc tgcatgtatt ttgcaaaaat
1601 tgtttggaac atactgttag acagcaatgt gccacctgcc aactgggcaa
1651 aattgggcta tcaggaagat accaagtttg ctgcttttga cttctttgat
1701 ggagtcacaa atccagctag tctacagcct gcagatggcc taatcaggca
1751 gcccaatgaa aaagagcttg ctgctcactc ggttgctaaa tatggtgccc
1801 ttgcccgcca gaaaatatcc actggtaact acatcaccac ccttggtgaa
1851 gttacacgtg gtcacatggg cggcgccaac actatgtacg caattgatgc
1901 acctcctgaa ctttaa