Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate PMU08/37 triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and capsid protein (CP) genes, complete cds.
ACC No: FJ263358
Dated: 2009-11-18 | Length: 1916 | CRC: 1738877509
ID FJ263358; SV 1; linear; genomic RNA; STD; VRL; 1916 BP.
XX
AC FJ263358;
XX
DT 02-OCT-2009 (Rel. 102, Created)
DT 18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE Pepino mosaic virus isolate PMU08/37 triple gene block protein 1 (TGBp1),
DE triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3),
DE and capsid protein (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-1916
RX PUBMED; 19759144.
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT dynamics of this emergent virus";
RL J. Virol. 83(23):12378-12387(2009).
XX
RN [2]
RP 1-1916
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT ;
RL Submitted (29-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL Murcia Apdo. Correos 164 30100, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .1916
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="PMU08/37"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="Apr-2008"
FT /note="CH2 type acronym: PepMV"
FT /db_xref="taxon:112229"
FT gene 1. .705
FT /gene="TGBp1"
FT CDS 1. .705
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /db_xref="UniProtKB/TrEMBL:C9WC68"
FT /protein_id="ACO59426.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIEGLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTSYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT gene 686. .1057
FT /gene="TGBp2"
FT CDS 686. .1057
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /db_xref="UniProtKB/TrEMBL:C9WC69"
FT /protein_id="ACO59427.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVFILIFILTLGIVLTNQFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT gene 909. .1157
FT /gene="TGBp3"
FT CDS 909. .1157
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q334E8"
FT /protein_id="ACO59428.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT gene 1203. .1916
FT /gene="CP"
FT CDS 1203. .1916
FT /codon_start=1
FT /gene="CP"
FT /product="capsid protein"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q699Z5"
FT /protein_id="ACO59429.1"
FT /translation="MENQPTASNPSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 1916 BP; 561 A; 470 C; 340 G; 545 T; 0 other;
fj263358 Length: 1916 18-NOV-2009 Type: N Check: 8817 ..
1 atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca
51 caagattaac actgaaggaa tcattgttgt gcacggaatt gctggaactg
101 ggaaaaccac attgcttagg actttatttt ctgcataccc tagcttagtt
151 ataggttcac ctaggccttg ttacttagat aaagctaata agatttcaca
201 agtttgcctt tcttgttttc caaatacctt gtgtgacatt gttgacgagt
251 accatctctt agaaagtttt cctgaaccaa aactagccat ttttggtgac
301 ccctgtcagt gcacttacat tgaagggttg agaacaccca actacacatc
351 cttcagaaca caccgatttg gcaaatccac tgctgctcta ctaaacaagt
401 tatttgatct taacatcgag tcagtcaaag cacaagacga cacagtggaa
451 tactttgatc ctttcgcagt ggacccctct gaacacattt ctgcatcaga
501 aaaagaagtt ttggaatttg taggtgatca agttgagact acaagctctg
551 aagaactagc tggtctcgag tttagtgaag ttacttccta ctgtaccaca
601 cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac
651 tagacacact tcaaagctca caattggtga actaaatgcc aggtctgact
701 cctagagctg atcttactga cacgtataaa atcattgcta tagcctttct
751 actgtcagct tgcatttact tccaaaacag tcattatcaa ccagttgcag
801 gtgataattt gcacagacta cccttcggtg gtcagtatca agacggaact
851 aagaagattt cttactttcc gcagcaacaa tcttactttc actcaggaaa
901 caagcttaat gtcttcatac ttatcttcat tcttacactg ggtattgtcc
951 tcaccaatca atttagtttt agcattagcc gtaatactca ccagcatcat
1001 tgctacaaca cacattctgc aacccaaaca ggtcaatcag tgccaggtca
1051 tcattgatgg tgcagccata gttataacaa attgtccaaa cacacccgaa
1101 gttcttaaag caatcaactt ctccccttgg aacgggttaa gttttcctca
1151 attgtgaaat catattcatt atctagttaa atttaaacaa tttaactcaa
1201 ctatggaaaa ccaacctaca gcttctaacc catcagatgc accaccaact
1251 gctgctcaag ctggtgccca gagcccagcc gacttctcaa atcctaatac
1301 agctccttcc ctaagtgatt tgaagaagat caaatacgtg tcaactgtca
1351 cttcagttgc cacgcctgct gaaattgaag cccttggcaa gatctttact
1401 gccatgggtt tagcagccaa tgagaccgga cctgccatgt gggacctcgc
1451 tcgtgcttat gctgatgtgc aaagttcaaa atctgcacaa cttataggtg
1501 ccacaccatc caaccctgct ttgtctagac gtgcacttgc tgcacagttt
1551 gatcgtatca atatcacacc cagacaattc tgcatgtatt ttgcaaaaat
1601 tgtttggaac atactgttag acagcaatgt gccacctgcc aactgggcaa
1651 aattgggcta tcaggaagat accaagtttg ctgcttttga cttctttgat
1701 ggagtcacaa atccagctag tctacagcct gcagatggcc taatcaggca
1751 gcccaatgaa aaagagcttg ctgctcactc ggttgctaaa tatggtgccc
1801 ttgcccgcca gaaaatatcc actggtaact acatcaccac ccttggtgaa
1851 gttacacgtg gtcacatggg cggcgccaac actatgtacg caattgatgc
1901 acctcctgaa ctttaa