Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate PMU08/48 triple gene block protein 1 (TGBp1) gene, complete cds; nonfunctional triple gene block protein 2 (TGBp2) gene, complete sequence; and triple gene block protein 3 (TGBp3) and capsid protein (CP) genes, complete cds.
ACC No: FJ263365
Dated: 2009-11-18 | Length: 1915 | CRC: 1479446601
ID FJ263365; SV 1; linear; genomic RNA; STD; VRL; 1915 BP.
XX
AC FJ263365;
XX
DT 02-OCT-2009 (Rel. 102, Created)
DT 18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE Pepino mosaic virus isolate PMU08/48 triple gene block protein 1 (TGBp1)
DE gene, complete cds; nonfunctional triple gene block protein 2 (TGBp2) gene,
DE complete sequence; and triple gene block protein 3 (TGBp3) and capsid
DE protein (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-1915
RX PUBMED; 19759144.
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT dynamics of this emergent virus";
RL J. Virol. 83(23):12378-12387(2009).
XX
RN [2]
RP 1-1915
RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT ;
RL Submitted (29-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL Murcia Apdo. Correos 164 30100, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .1915
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="PMU08/48"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="Apr-2008"
FT /note="CH2 type acronym: PepMV"
FT /db_xref="taxon:112229"
FT gene 1. .705
FT /gene="TGBp1"
FT CDS 1. .705
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /db_xref="UniProtKB/TrEMBL:C9WC95"
FT /protein_id="ACO59453.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHV
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT gene 686. .1056
FT /gene="TGBp2"
FT misc_feature 686. .1056
FT /gene="TGBp2"
FT /note="nonfunctional triple gene block protein 2 due to
FT mutation"
FT gene 908. .1156
FT /gene="TGBp3"
FT CDS 908. .1156
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /db_xref="UniProtKB/TrEMBL:C9WC96"
FT /protein_id="ACO59454.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNVLSFPQL"
FT gene 1202. .1915
FT /gene="CP"
FT CDS 1202. .1915
FT /codon_start=1
FT /gene="CP"
FT /product="capsid protein"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT /protein_id="ACO59455.1"
FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 1915 BP; 560 A; 470 C; 338 G; 547 T; 0 other;
fj263365 Length: 1915 18-NOV-2009 Type: N Check: 6846 ..
1 atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca
51 caagattaac actgaaggaa tcattgttgt gcacggaatt gctggaactg
101 ggaaaaccac attgcttagg actttatttt ctgcttaccc tagcttagtt
151 ataggttcac ctaggccttg ttacttagat aaagctaata aaatttcaca
201 agtttgcctt tcttgttttc caaatacctt gtgtgacatt gttgacgagt
251 accatctctt agaaagtttt cctgaaccaa aactagccat ttttggtgac
301 ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc
351 cttcagaaca caccgatttg gcaaatccac tgctgctcta ctaaacaagt
401 tatttgatct taacattgag tcagtcaaag cacaagacga cacagtagaa
451 tactttgatc ctttcgcagt ggacccctct gaacacgttt ctgcttcaga
501 aaaagaagtt ttggaatttg taggtgatca agttgagact acaagctctg
551 aagaactagc tggtctcgag tttagtgaag ttactttcta ctgtaccaca
601 cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac
651 cagacacact tcaaagctca caattggtga actaaatgcc aggtctgact
701 cctagagctg atcttactga cacgtataaa atcattgcta tagcctttct
751 actgtcagct tgcatttact tccaaacagt cattatcaac cagttacagg
801 tgataatttg cacagactac cctttggtgg tcagtatcaa gacggaacta
851 agaagatctc ttactttccg cagcaacaat cctactttca ctcaggaaac
901 aagcttaatg tcctcatact tatcttcatt cttacactgg gtattgtcct
951 caccaataaa tttagtttta gcattagccg taatactcac cagcatcatt
1001 gctacaacac acattctgca acccaagcag gtcaatcagt gccaggtcat
1051 cattgatggt gcagccatag tcataacaaa ttgtccaaac acacccgaag
1101 ttcttaaagc aatcaacttc tccccttgga acgtgttaag ttttcctcaa
1151 ttgtgaaatc atatttgtta tctagttaaa ttcaaacaat ttaactcaac
1201 tatggaaaac caacctacag cttctaaccc atcagatgta ccaccaactg
1251 ctgctcaagc tggtgcccag agcccagccg acttctcaaa tcctaataca
1301 gctccttccc taagtgattt gaagaagatc aaatacgtgt caactgtcac
1351 ttcagttgcc acgcctgctg aaattgaagc ccttggcaag atctttactg
1401 ccatgggttt agcagccaat gagaccggac ctgccatgtg ggacctcgct
1451 cgtgcttatg ctgatgtgca aagttcaaaa tctgcacaac ttataggtgc
1501 cacaccatcc aaccctgctt tgtctagacg tgcacttgct gcacagtttg
1551 atcgtatcaa tatcacaccc agacaattct gcatgtattt tgcaaaaatt
1601 gtttggaaca tactgttaga cagcaatgtg ccacctgcca actgggcaaa
1651 attgggctat caggaagata ccaagtttgc tgcttttgac ttctttgatg
1701 gagtcacaaa cccagctagt ctacagcctg cagatggcct aattaggcag
1751 cccaatgaaa aagagcttgc tgctcactcg gttgctaaat atggtgccct
1801 tgcccgccag aaaatatcca ctggtaacta catcaccacc cttggtgaag
1851 ttacacgtgg tcacatgggc ggcgccaaca ctatgtacgc aattgatgca
1901 cctcctgaac tttaa