Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus strain Abadeh, complete genome.
ACC No: FJ355946
Dated: 2008-11-05 | Length: 2782 | CRC: 1096463765
ID FJ355946; SV 1; circular; genomic DNA; STD; VRL; 2782 BP.
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AC FJ355946;
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DT 05-NOV-2008 (Rel. 97, Created)
DT 05-NOV-2008 (Rel. 97, Last updated, Version 1)
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DE Tomato yellow leaf curl virus strain Abadeh, complete genome.
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KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2782
RA Pakniat Jahromy A., Behjatnia S.A., Izadpanah K.;
RT "A new strain of Tomato yellow leaf curl virus (TYLCV) in Fars province";
RL (in) Unknown A. (Eds.);
RL PROCEEDING OF 18TH IRANIAN PLANT PROTECTION CONGRESS:491-491;
RL Unknown Publisher (2008)
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RN [2]
RP 1-2782
RA Pakniat Jahromy A., Behjatnia S.A., Izadpanah K.;
RT ;
RL Submitted (30-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Virology Research Center, Shiraz, Fars 71441-65186, Iran
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FH Key Location/Qualifiers
FH
FT source 1. .2782
FT /organism="Tomato yellow leaf curl virus"
FT /strain="Abadeh"
FT /mol_type="genomic DNA"
FT /country="Iran"
FT /db_xref="taxon:10832"
FT CDS 148. .498
FT /codon_start=1
FT /product="V2"
FT /note="pre-coat protein"
FT /protein_id="ACJ05690.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PKAQNIQNVSKS"
FT CDS 308. .1084
FT /codon_start=1
FT /product="V1"
FT /note="coat protein"
FT /protein_id="ACJ05691.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVIFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1103. .1486)
FT /codon_start=1
FT /product="C3"
FT /protein_id="ACJ05692.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPPTGRFLRVFSYEVLKYLDSLWVISINN
FT VIRAGDHVLYDVLEKHTKCNRKS"
FT CDS complement(1227. .1634)
FT /codon_start=1
FT /product="C2"
FT /protein_id="ACJ05693.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKISKKKTIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1543. .2616)
FT /codon_start=1
FT /product="C1"
FT /note="replication associated protein"
FT /protein_id="ACJ05694.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA
FT QELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPTRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFQEPPAHYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT SINQGPTQDIQEENNKT"
FT CDS complement(2172. .2471)
FT /codon_start=1
FT /product="C4"
FT /protein_id="ACJ05695.1"
FT /translation="MKMGLLISMFSSSSKESTNVRTNGSSIYPLQPGQHISIRTFRQLR
FT AQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAANPRPSIY"
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SQ Sequence 2782 BP; 771 A; 533 C; 607 G; 871 T; 0 other;
fj355946 Length: 2782 05-NOV-2008 Type: N Check: 4183 ..
1 accggatggc cgcgcctttt ctttttatgt ggtccccacg aggatttcac
51 agacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagta
101 ttcatttgtc tttatatact tggtccccaa gtattttgtc ttgcataatg
151 tgggacccac ttctaaatga gtttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cgaaagccca gaatatacag aatgtatcga agtcctgatg
501 ttccccgtgg atgtgaaggc ccatgtaagg ttcagtctta tgagcaacgg
551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtt tggatggatg aaaatataaa gaagcagaat
701 cacactaatc aggtcatatt cttcttggtc cgtgatagaa ggccctacgg
751 aagcagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aaccgtgaag aatgatttga gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc
951 atcaagaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgtatctat ttctatgatt ccatatcaaa ttaataaaat ttatatttta
1101 tatcatgact ttctgttaca tttagtgtgt ttttcaagta catcatacaa
1151 tacatgatca cctgctctga ttacattgtt aatcgaaatt acccaaagac
1201 tatctaaata cttaagaact tcatagctaa atactcttaa gaaacgacca
1251 gtcggaggct gtaatgtcgt ccaaattcgg aagttgagaa aacatttgtg
1301 aatccccatt accttcctga tgttgtggtt gaatcttatc tgaatggaaa
1351 tgatgtcgtg gttcattaga aatggcctct ggctgtgttc tgttatcttg
1401 aaatagaggg gattgtttat ctcccagata aaaacgccat tctctgcttg
1451 aggagcagtg atgagttccc ctgtgcgtga atccatgatt attgcagttg
1501 aggtggaggt agtatgagca gccacagtct aggtctacac gcttacgtct
1551 tattgttttc ttcttggata tcttgtgttg gaccttgatt gatacttgcg
1601 aacagtggct cgtagagggt gacgaaggtt gcattcttga gagcccaatt
1651 tttcaaggat atgttttttt cttcgtctag atattcccta tatgaggagg
1701 taggtcctgg attgcagagg aagatagtgg gaattccccc tttaatttga
1751 atgggcttcc cgtactttgt gttgctttgc cagtccctct gggcccccat
1801 gaattcctta aagtgcttta aatagtgcgg gtctacgtca tcaatgacgt
1851 tgtaccacgc atcattactg tacacctttg gacttaggtc tagatgtcca
1901 cataaataat tatgtgggcc tagagacctg gcccacatcg tctttcctgt
1951 tctgctatca ccctcgatga taatactatt aggtctccat ggccgcgcag
2001 ctgaagacat gacgttctct gacacccata cttcaagttc atctggaact
2051 tgattaaaag atgaagataa aaagggagaa atataatgag ccggaggctc
2101 ctgaaaaatt ctatctaaat ttgaacttaa attatgaaat tgtaaaatat
2151 aatcctttgg ggccttctct ttcaatatat tgagggcctc ggatttgctg
2201 cctgaattga gtgcttcggc atatgcgtcg ttggcagatt gctgacctcc
2251 tctagctgat ctgccatcga tttggaaaac tccaaaatca atgaagtctc
2301 cgtctttctc cacgtaggtc ttgacatctg ttgagctctt agctgcctga
2351 atgttcggat ggaaatgtgc tgacctggtt ggagaggata aatcgaagaa
2401 ccgttggttc ttacattggt actttccttc gaactggatg agaacatgga
2451 gatgaggaga cccatcttca tgtagttcct gcgcaactcg tatgaatttc
2501 ttgttagttg gtgtatttag ggcaagtaat tgggaaagtg cttcttcttt
2551 agagagagaa caattaggat aagtcaggaa ataatttttg gcatatattt
2601 taaatagacg aggcatggtg aaatgaatcg gtgtccctca aagctctatg
2651 gcaatcggtg tatcggtgtc ttatttatac ctagacaccc aatggctatt
2701 tggtaatttc gtaaaagtac aatgtaattc aaaattcaaa attcaaaaat
2751 caaatcatta aagcggccat ccgtataata tt