Sequence of DPV Rudbeckia flower distortion virus
Rudbeckia flower distortion virus isolate Minnesota, complete genome.
ACC No: FJ493469
Dated: 2009-01-13 | Length: 8222 | CRC: -133686041
ID FJ493469; SV 1; circular; genomic DNA; STD; VRL; 8222 BP.
XX
AC FJ493469;
XX
DT 13-JAN-2009 (Rel. 99, Created)
DT 13-JAN-2009 (Rel. 99, Last updated, Version 1)
XX
DE Rudbeckia flower distortion virus isolate Minnesota, complete genome.
XX
KW .
XX
OS Rudbeckia flower distortion virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae;
OC unclassified Caulimoviridae.
XX
RN [1]
RP 1-8222
RA Lockhart B., Olszewski N.;
RT "Complete sequence of Rudbeckia flower distortion virus (RuFDV), a
RT pararetrovirus in the family Caulimoviridae isolated from Rudbeckia hirta";
RL Unpublished.
XX
RN [2]
RP 1-8222
RA Lockhart B., Olszewski N.;
RT ;
RL Submitted (26-NOV-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St.
RL Paul, MN 55108-1095, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .8222
FT /organism="Rudbeckia flower distortion virus"
FT /host="Rudbeckia hirta"
FT /isolate="Minnesota"
FT /mol_type="genomic DNA"
FT /country="USA:Minnesota"
FT /collection_date="Sep-2008"
FT /db_xref="taxon:587370"
FT misc_feature 1. .12
FT /note="predicted tRNA binding site; priming site for
FT reverse transcription"
FT CDS 113. .451
FT /codon_start=1
FT /product="hypothetical protein"
FT /protein_id="ACL36978.1"
FT /translation="MTDRTESSSNQNLWYIGDGTSYQCYLQGQYPHSFHCTNYELLPAV
FT VNQLQDGLNFLILNSIKKDSQEKPVNNYLEIDNEIKNLFLIQDKKIEDLNSKLDKVLQL
FT QTDILKRI"
FT CDS 453. .1418
FT /codon_start=1
FT /product="putative cell-to-cell movement protein"
FT /protein_id="ACL36979.1"
FT /translation="MSIDITCYDDVTQLVSFNEDQKYYSSDVMIDTAKARKLAKHDAIT
FT IKSGENIKTAILKSIFGRLSRENIIYLGKFVQEHPIEISQADGLTGLNLVTNHQLSERL
FT AKISDHDRSKISYLHIGTIQIILKSTFKEMINSPIDLAIIDNRIKTSDCIIGIIQGNLA
FT YQVIKFNVNLNYAIPLESKNITNSIGILYKFHNKELMEKGDHPFSITYAVGYCLTNSHH
FT SIDYIKHDKIIVDKLFDEVSTRNMHFSFKNDKTPFRTLKRTPSSRIPTLKLTSNADYAN
FT TSIGALPIQPIRRSITLPNEQVQQIAEGVSNLTEIINKRL"
FT CDS 1418. .1984
FT /codon_start=1
FT /product="hypothetical protein"
FT /protein_id="ACL36980.1"
FT /translation="MDASFGKRNEDESLTHYLERVLPTVINQVTDMTQILKELFDKTGI
FT QTYETEFERYFKSKQFSKFRDNECLDSKMEHTMVIPLNVPTIPDYSGQTIECSCSNKGN
FT WPHLLHSGNPVLNTQSDILVYLRKTVSDIQKQQVFDHSNLVQLIQHELKNLKCECNCEK
FT ASASINWEISPNFTQDTGKLFITDK"
FT CDS 1981. .3606
FT /codon_start=1
FT /product="putative capsid protein"
FT /note="structural protein"
FT /protein_id="ACL36981.1"
FT /translation="MIFPILVKTFIIISGSHTVHRFIKNISKPEQTEQLYPLIDTNVSN
FT EILTQEVIDNIQSFQIKTEQDEPVQEKLYGYEDDEEEILVDNSSYGSIPEDEDPEERAY
FT NEEGQGSGIPEFNVIPKNEGAEHYDPFNDFQRNYDSDRRRYPRGHFNFSDLRFPRETNV
FT PLEFQPRSYKNSTLSVLNIDCIVNKAQAIDDWIAATDVMILTNEGLRNNIKNAWAFITH
FT LVSGNITEYINRLNEEQKKKLFEESKDGHDLLRLFRAALYAAFLGIDIKNNPEEAQLKK
FT EENAMWRLNNICISDLCLLDEFHCEFEKYFYQLSVDNQERYLQVYSDKIPGEVGFEHRR
FT SWRERDPSILDTLGGRKRSLDEYIARECTRRLLFKQVKRTAKICCKPNNLNIPGNYGCY
FT PTVPAKNRNKKLFQKKKLKRFKKTNRNSYYKAKPAFRRKFFRKRKTVVKPTTKTADNKA
FT KYCPKGKPNCRCWLCKEEGHYANACPNKEKIDSKQVKLFETIYLLQGFEPIEDDENLSD
FT SDSIYYLTDDEIEDYSSDESESEN"
FT CDS 3557. .5662
FT /codon_start=1
FT /product="putative enzymatic polyprotein"
FT /note="contains aspartic protease, endonuclease, and
FT reverse transcriptase"
FT /protein_id="ACL36982.1"
FT /translation="MTKSKITLLMNLNLKTSGKSTKTNPYSTYVTVGFYFNGYKGFHLH
FT AYVDTGATSCTASPHIIPTELWEELPKPILVNIANDTNIEIRYVTRNLKVSMTDTNGNK
FT HTFIIPTVYQQNTGMDFIFGQNFLKLYRPFTQDLYEIYLTPKLLKFKIQQRAFKQASPG
FT FLDSIRKQKRGEIISKHATNPINITKLEDNLRIVETILEDSNSKTLSEVSDSKTLSEDS
FT DDYFVYSIQRHNTIVNDLLTQACSENPLDENKNHNGLLAEIKLINPATTVNVKSMAYSP
FT DDAVEINKQIQELLEIKVIRPSRSPHSSPCFLVQNHNEIKRGKKRLVINYKALNAATIS
FT DGYLLPNKETILTAIRGRKYFSTLDCKSGFWQIRLNENSKPLTAFSCPMGQYEWNVVPF
FT GLKQAPGLFQRFMDNSFKEYSAFCAVYVDDILVFSKTLDEHYDHLETVLRKCIETGIIL
FT SKKKAEVAKTKINYLGFTISNGEIELQSHILENIKLFPSRIPDKKSLQRFLGILTYADQ
FT YIRKLAEWRKPLQRKLKKDTVWEWNDSDTQYVEKFKRNLKEFPKLHHPLPDEYLIIETD
FT ASHEHWAGVLKSRGTDNLERLCRYTSGSFKPAEINYHSNEKEVLAVKRTITKFKGYLAS
FT SEFLVRTDNKYFTYFLRTSIKDDYKQGRLIRWQQWFSHYKFNVEHLAGTHNFTADSLTR
FT EFANKPP"
FT CDS 5672. .6769
FT /codon_start=1
FT /product="putative translational transactivator"
FT /protein_id="ACL36983.1"
FT /translation="MASLAEINAAEQALLAKLEGLIKEVKTEFSKLRKNTASSSSEKDQ
FT PPKKIQKAEDKTLSLRPNYKRILEQEFDEDERKFTVLGKIPQNHAKLAELPALPLIKLN
FT PEELTSKNFLEAFNFLRTASKEDFEEKHIFPTRRTTKEDPRAIIFPMAMPSDVYELFCL
FT GLIKTIYLTGKNETISHFPNKFRQAVQGWMKRTSTENAVLTILSTIPDWKNGKIVLPYH
FT MIKIEQTSTFPALTVSKPLAEKETIWIKHQISSIDRITRAAEKLDNNKNVKINYQTSRM
FT LMYSDYKKCSSSDEQLVRKWHTNSYNIIQEMSDETRAAYFELEEDMKKIMMTDDVPVAL
FT SNSSTIDDVELDKLPNTGPLNNEDA"
FT CDS 7619. .8128
FT /codon_start=1
FT /product="hypothetical protein"
FT /protein_id="ACL36984.1"
FT /translation="MDNDFLELLYRNKQPLCENNAIRYANKVDDLLYYQEFLVLKAIDE
FT LIFMRNCQQTYNQVYSRGSDLNRFYGLQLESEIKIEKLEDIRKQFLMHSDNNYCLHNNL
FT PRGVQPPITSVYNGTTTFKGNYSENYLCSLDSRIVEKRSKELLELRQALSESLPLLSSS
FT EDENSD"
XX
SQ Sequence 8222 BP; 3038 A; 1659 C; 1339 G; 2186 T; 0 other;
fj493469 Length: 8222 13-JAN-2009 Type: N Check: 5070 ..
1 tggtatcaga gcttcaggct ctatccttgg gaacaacttt ttccttgatt
51 gtgaaaacaa cttagtaaat ttcttaactt gaaatcttac acttactttt
101 cttaaaagga aaatgactga tagaactgaa agttcttcaa accaaaacct
151 atggtacata ggtgatggca cctcttatca gtgttactta cagggccaat
201 accctcatag ttttcactgt acaaactatg aactcctacc agcagtagtc
251 aaccaactac aggacggatt aaacttcctt atacttaata gtataaagaa
301 agactctcag gaaaaacctg taaacaatta tctagaaata gataatgaaa
351 ttaaaaatct atttttaatt caagacaaaa agatcgaaga tcttaactct
401 aaacttgata aagttttaca acttcaaacg gatattttaa aaaggattta
451 aaatgtctat tgatatcact tgttacgatg atgtaacaca acttgtatct
501 tttaacgaag atcaaaaata ctattcatca gatgtgatga tagatactgc
551 aaaagctaga aagcttgcaa aacatgatgc aattaccatc aagagtggtg
601 agaacatcaa aacagctata cttaaatcga tctttggacg attaagtaga
651 gaaaacatta tttacctcgg taaatttgta caagaacatc ccattgagat
701 atctcaagca gatggtctaa ctggtctaaa cctagtcact aatcaccaat
751 taagtgaacg gttagccaag atatctgacc acgacaggtc aaaaatatct
801 tacctacata taggtacaat acagatcata cttaaatcta cgtttaagga
851 aatgatcaac tcacctattg atctcgcgat catagacaac aggataaaaa
901 cttctgattg tataatcgga attatccaag gaaacttagc ctatcaggtt
951 ataaagttta atgttaattt aaactacgct attcctttgg aatcaaaaaa
1001 cattaccaat tcaattggta ttctttacaa attccataac aaggaattaa
1051 tggaaaaagg agatcatcct ttctctataa cctatgcagt cggatactgc
1101 ctcactaata gtcatcacag catagactat attaaacacg acaagataat
1151 tgtcgacaaa ctttttgacg aagtaagcac tagaaatatg cacttctcat
1201 tcaaaaacga taagactccg ttcaggactc ttaaaagaac tcctagtagt
1251 aggataccta ctcttaaact aacaagtaat gcagattatg ccaacacatc
1301 cattggagca ttaccgatac aaccgatcag aagatcgatt actttaccta
1351 atgaacaggt acaacaaatc gcagaaggcg tctccaactt gacagaaatt
1401 ataaacaaac gtttataatg gatgcctcct tcggaaaacg aaatgaggat
1451 gaatccctca ctcactatct cgaaagagtt cttcctacag tcatcaacca
1501 ggtaactgac atgactcaaa ttttaaaaga acttttcgac aaaacaggta
1551 ttcaaaccta cgaaactgaa tttgaaagat atttcaaatc aaaacaattc
1601 tctaaattta gagacaacga atgcttagat agcaaaatgg aacatacaat
1651 ggttatacct ttgaatgtcc caactattcc agattactct ggacaaacta
1701 ttgaatgtag ctgttccaat aaaggaaact ggccacattt gcttcattca
1751 ggaaatcccg tcctgaatac acaatcggat atactcgtat atctgagaaa
1801 gaccgtttct gatattcaga agcaacaagt gtttgatcat tcaaaccttg
1851 tacaattaat tcaacatgaa ttaaaaaact tgaaatgcga gtgcaactgt
1901 gaaaaagcat cagcatcaat caactgggaa atttctccca attttacaca
1951 ggacactgga aaacttttta tcactgataa atgatttttc caattcttgt
2001 caaaactttt ataataatca gtggaagcca cacagtccac agatttatta
2051 aaaacatctc taaaccagag caaactgaac aattgtatcc acttatagat
2101 actaacgttt ctaacgagat cttgactcaa gaagtcatag acaatataca
2151 atcttttcag ataaaaactg aacaggatga accagttcaa gaaaaactgt
2201 atggctacga agatgacgaa gaagagattc tcgtagacaa cagctcttat
2251 ggaagcattc cagaagacga agacccggaa gaacgggcat acaatgaaga
2301 aggacaaggt tctggaatac cagaattcaa cgtcattcca aaaaacgaag
2351 gggcagaaca ctatgatccc tttaacgact ttcagagaaa ctatgattct
2401 gatagaagaa gatacccgag aggacacttc aatttctctg atctacgatt
2451 cccacgtgaa acaaacgtac ctctggagtt ccaacccaga agttacaaaa
2501 acagcacact tagtgtgtta aacattgact gtatagtcaa caaagcacaa
2551 gcaatcgacg actggattgc tgcaactgat gttatgatct taaccaatga
2601 agggttaaga aacaacatta aaaacgcatg ggcattcata acccatcttg
2651 tatccggaaa cattaccgaa tacatcaaca gacttaatga agaacaaaag
2701 aaaaagctct ttgaagagtc aaaagacgga cacgatctac tgagactatt
2751 tcgtgcagca ctatacgcag ccttcttagg aattgacatc aaaaacaatc
2801 ctgaagaagc acaactcaaa aaggaagaaa atgcaatgtg gagactcaac
2851 aacatttgca ttagcgacct ttgtttactt gatgaattcc actgtgaatt
2901 cgaaaaatac ttctatcaac tatcagttga taatcaagaa cgatacctac
2951 aggtatattc agacaagata cccggcgaag tcggttttga acatcgtcgt
3001 tcatggcgag aacgagatcc ctcgatcctt gacacgctcg gcggacgaaa
3051 acgctcactc gacgaataca tcgctcgaga atgcacaaga cgattactgt
3101 tcaaacaggt aaaacgtaca gcaaagattt gctgtaaacc aaacaatctt
3151 aacatccctg gtaactacgg atgttatcca acggttcctg ctaaaaatag
3201 gaacaaaaaa ctttttcaaa agaaaaaact taaacgattt aagaaaacaa
3251 atcgtaattc ttactacaaa gcaaaacctg cttttagacg aaagtttttt
3301 cgaaaacgaa aaacggttgt taaaccaaca acaaaaactg ccgataataa
3351 ggcaaaatac tgtcccaaag ggaaaccaaa ctgccgatgc tggctatgca
3401 aagaagaagg acactatgct aacgcatgtc ctaacaaaga aaagatagac
3451 tctaaacaag tcaaactttt cgaaactatc tatcttctcc aaggttttga
3501 acctatagaa gatgatgaaa acttgtcgga ttccgattcg atatattact
3551 taacagatga cgaaatcgaa gattactctt ctgatgaatc tgaatctgaa
3601 aactagtggt aaatccacaa aaactaaccc atacagtact tatgtaactg
3651 tcggttttta ctttaatgga tacaaaggtt tccatttaca cgcatatgtt
3701 gatacaggtg caacatcttg tacagcatcc ccacatataa ttccaacaga
3751 attatgggaa gaacttccca aaccaatatt ggtaaatatt gccaatgata
3801 ctaatatcga aattcgatat gtaactagaa acttaaaagt ttcgatgact
3851 gatacgaatg gtaataaaca tacgtttatt ataccaaccg tatatcaaca
3901 aaacacgggc atggatttta tttttggaca aaattttcta aaattatacc
3951 gcccttttac tcaagatctc tacgagattt atttaactcc aaaactttta
4001 aagtttaaaa tacaacagag agcttttaag caagcttctc ctggttttct
4051 tgatagtatt agaaagcaaa aacgtggtga gattatatca aagcacgcaa
4101 ctaatcctat caacatcaca aaacttgaag acaatctaag aattgtcgaa
4151 actatattgg aagattccaa tagcaaaact ttatcagagg tttctgatag
4201 taaaacttta tcagaggatt ctgatgatta ctttgtgtac tctatacaga
4251 gacataacac gatcgttaac gatctactta ctcaagcatg cagtgaaaat
4301 ccactggatg aaaacaaaaa ccataatggt ttacttgctg agattaagtt
4351 aattaatcca gccacaactg taaatgttaa atctatggca tactctccgg
4401 atgatgcagt agaaattaac aaacaaatac aggaactttt agaaataaaa
4451 gttatacgac catcacggtc acctcactcc tcaccatgct ttttggtgca
4501 gaatcacaac gagattaaac gtggtaaaaa acgtttagtt ataaactata
4551 aggctttgaa tgccgcaact atatccgatg gatatttact ccctaacaag
4601 gagactattc ttaccgctat acgtggaaga aaatacttct cgactcttga
4651 ctgtaagtca ggattctggc aaatacgttt gaatgaaaat tcaaaaccac
4701 ttactgcatt ctcttgccct atgggtcaat atgaatggaa cgttgtcccg
4751 tttggactaa aacaagctcc tggactattt caaaggttca tggacaattc
4801 ctttaaggaa tactctgcct tttgtgcagt ctacgtagat gacatacttg
4851 tcttctcaaa aacacttgat gaacattatg atcatctaga aactgtgctt
4901 agaaagtgca ttgaaactgg cataatcctt tctaaaaaga aagctgaggt
4951 tgctaaaact aaaatcaatt atcttggttt tactatctcc aatggagaaa
5001 ttgaacttca atctcatatc cttgagaata taaaactttt tccaagtaga
5051 attcctgata aaaaatcact acaaaggttt cttggaatac taacgtatgc
5101 agatcaatac atacgaaaac ttgccgaatg gcgaaaacct cttcagagaa
5151 aattgaagaa agatactgta tgggaatgga atgattccga tactcagtac
5201 gtggaaaaat ttaagagaaa tcttaaagaa ttcccaaaat tacaccatcc
5251 tttaccggat gaatacttga tcatcgaaac tgatgcatca catgaacact
5301 gggctggtgt cctaaagtcc cgagggactg acaacttaga acgactatgt
5351 cgttatacaa gcggatcatt caaacccgct gaaatcaact atcacagcaa
5401 cgaaaaagaa gtgcttgctg taaaaagaac tattacaaaa ttcaagggct
5451 atcttgcaag ttctgaattt ttagtacgaa cagacaacaa atactttacg
5501 tattttctac ggacgtccat aaaggatgac tacaaacaag gccgtttaat
5551 acggtggcaa cagtggttct cccactataa attcaacgtt gagcaccttg
5601 caggtactca caacttcact gccgattccc ttaccagaga attcgcaaac
5651 aaacctcctt gaaggaactt catggcatca ctagcagaaa tcaatgctgc
5701 tgaacaggct ctcctagcca aactcgaagg cctcataaaa gaggttaaaa
5751 ctgaattctc aaaattgaga aaaaatactg catcttcctc ttctgaaaaa
5801 gatcaaccac caaagaagat ccagaaggca gaagacaaaa cactttccct
5851 ccgtccaaat tacaaaagaa ttcttgaaca agaatttgat gaagacgaaa
5901 ggaaattcac tgttctggga aaaattcccc agaatcatgc taaacttgca
5951 gaactccctg ctttaccgct cattaagctc aacccagaag agcttaccag
6001 caaaaacttt ctcgaagcct tcaactttct tcgaacagca agtaaagaag
6051 actttgaaga aaaacatatc ttcccaacaa gaagaacaac taaagaagat
6101 cccagagcga tcatctttcc gatggcaatg ccatccgacg tatatgagct
6151 tttctgctta gggctcataa aaactattta ccttacaggt aaaaacgaaa
6201 ctatctctca ttttcccaac aaattcagac aggctgtcca gggatggatg
6251 aagagaacct ccactgagaa cgctgttctc accatacttt ccactatacc
6301 ggattggaaa aatggtaaga ttgttcttcc ctatcacatg ataaagatag
6351 aacaaacttc tacatttccg gctcttactg tcagcaaacc ccttgctgaa
6401 aaagaaacta tctggatcaa acaccagata agctcgatag atcgaatcac
6451 tcgagcagcc gaaaaacttg acaacaacaa aaatgtcaaa ataaactatc
6501 aaacatcccg gatgttgatg tactcggact acaaaaaatg tagttcatca
6551 gacgaacaac tcgtcagaaa gtggcataca aacagctaca acatcattca
6601 agagatgtct gacgaaacta gagctgcata ctttgaactc gaagaagaca
6651 tgaagaaaat catgatgacc gacgacgttc cggtagcact ctccaactca
6701 tcaacaattg atgacgtgga gcttgacaag cttccaaata ctgggcccct
6751 caataatgaa gatgcctgac taaaaggcgt ggccgacaat tgcttgcttt
6801 tactttaagc aaagcattta cttttagcac atgggttgct tttactttgc
6851 agaagattcc tgctttcact aaaggaggac agctactctc caccaaacgc
6901 aataatggaa gaagacgtaa gccatgacgt cagaagccca attattgtac
6951 ttatccttat tgtaagctcg tctatataag agcacctaga tgaagcatgt
7001 aagatataga aaaaattgta atctcttctc tgtactacta aactttcaat
7051 aaaattttaa tcttttgatt atgtcttcac aactccttat ggagtagaac
7101 ccttttgggg ttcttcaagg tcttgttcag aatgtctaag tagcaaaggg
7151 tacaggtgtt ctctattccg gcgaacaacc accgtgtaaa acctggaggc
7201 cattaaaagt acgcgtgtta gccaggaggg cgttgaagcg gaaaaaggct
7251 tggtcaagtg cacaagggta tgttgcggaa gacgagatgg gaccataacc
7301 cacagctgat gacaagaaca agatgaagaa gaactccatc tactaaacat
7351 aagagtaaga cttcttaatc atcaaacttt aaacttggtt taaaaactat
7401 gaactggacg ttcaacactc atcagagatt tctaaaagaa tctcttagac
7451 aacttgattt acaaataaat caaattcaac atcttctaaa cgaagaaacg
7501 actcgtctaa agcagacgaa atacaaacga gtaattcaaa ctcgaatttc
7551 tgggcttaaa actcaaaaga ctcttctttt aaaagaaaag aaaactcttg
7601 aaaatcaaat ctgttaacat ggataacgat tttctagaac ttttgtatag
7651 gaataaacaa cccctatgcg aaaacaatgc cataaggtat gcaaacaaag
7701 tagatgacct actttactac caagaattct tggtactaaa ggcaatcgat
7751 gaattaatat tcatgagaaa ctgccaacaa acttataacc aggtatatag
7801 ccgtggttca gatctaaacc gattttatgg tttacaactc gaatctgaaa
7851 taaagattga aaaacttgaa gacataagaa aacaatttct tatgcattca
7901 gacaataatt attgtttaca caataattta ccacgaggag ttcaacctcc
7951 aatcacttcc gtatataacg gaacaacgac ctttaaaggt aattactcag
8001 aaaactactt atgtagttta gattctagaa tcgttgaaaa acgatctaaa
8051 gaactacttg aactaagaca agctcttagt gaaagtcttc cgctactatc
8101 ttcttctgaa gatgaaaact ctgactaact aaaactgttt cgcagatttt
8151 agccaaaact cacccttttt attcatttca aaaaaccatt tttgaaaaat
8201 aaaatgagga cccctttttt cc