Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus isolate YM30H polyprotein gene, partial cds.
ACC No: FJ531812
Dated: 2009-06-03 | Length: 2088 | CRC: 1442744522
ID FJ531812; SV 1; linear; genomic RNA; STD; VRL; 2088 BP.
XX
AC FJ531812;
XX
DT 03-JUN-2009 (Rel. 101, Created)
DT 03-JUN-2009 (Rel. 101, Last updated, Version 1)
XX
DE Grapevine fanleaf virus isolate YM30H polyprotein gene, partial cds.
XX
KW .
XX
OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup A.
XX
RN [1]
RP 1-2088
RA Jawhar J., Minafra A., Boscia D., Martelli G.P.;
RT "Molecular differentiation of grapevine fanleaf virus isolates causing
RT yellow mosaic and infectious malformation";
RL Unpublished.
XX
RN [2]
RP 1-2088
RA Jawhar J., Minafra A., Boscia D., Martelli G.P.;
RT ;
RL Submitted (06-DEC-2008) to the EMBL/GenBank/DDBJ databases.
RL DPPMA, University of Bari, Amendola, Bari, Bari 70126, Italy
XX
FH Key Location/Qualifiers
FH
FT source 1. .2088
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /host="Nicotiana occidentalis"
FT /isolate="YM30H"
FT /mol_type="genomic RNA"
FT /country="Italy:Puglia"
FT /collection_date="2008"
FT /note="causes yellow mosaic"
FT /db_xref="taxon:12274"
FT CDS 1. .>2088
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="ACR48168.1"
FT /translation="MGKFYYSSRRLACWAAGKNPHLGGSVEQWLAAIETDPSFRQTVKE
FT DVQLNRERLDAIRMFSWKLGYGPIDNPEKCNWHFVLTGEVSAQPTQPVKADEVVGVPQP
FT KKVVIPSPPPPPAPYFRAVGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQ
FT GAPLKLSLAMKFAMLKHTTWRKWYDTSDERLLEAHPGGPCLPPPPPIQSPPSFYERRRE
FT FCRVKSCARAFALETSLGLNRAWVGLVDIPSTSVCCADGRTTGGQTIAQEADLLQHTVS
FT TSVAPGRAQWSSERRQLLRRKEPANSLQVFACLTDETXXXXXXXXXXXXXXXXXXXXXX
FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEEYRDRGMSA
FT VVVDAPEIDVNPFGMSGDSTDLTVVATYGHERDMARAFIGSASTILGNGLARAIFFPGL
FT QYSQKEPRRESIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASTVHQAQV
FT RGTTLRATMVGNTVVVSPEGSLVTGTPEARVEMGGGSSIRMVGPLQWESVEEPGQTFSI
FT RSRSRSVGIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDMIS
FT DFKGVQYERWITAGLVMPTFKIVIRLPANAFTGLTWVMSFDAYNRITSRITASADPGYP
FT LS"
FT mat_peptide 1. .774
FT /product="home protein"
FT /note="2A"
FT mat_peptide 775. .1818
FT /product="movement protein"
FT /note="2B"
FT mat_peptide 1819. .>2088
FT /product="coat protein"
FT /note="2C"
FT gap 955. .1164
FT /estimated_length=210
XX
SQ Sequence 2088 BP; 433 A; 446 C; 536 G; 463 T; 210 other;
fj531812 Length: 2088 03-JUN-2009 Type: N Check: 4807 ..
1 atgggcaagt tttattactc cagcaggcgt cttgcctgct gggctgctgg
51 taagaacccc catcttgggg gttctgttga acaatggctg gcggccattg
101 aaactgatcc ctccttccgc caaactgtta aggaggatgt ccagttgaac
151 cgggagcgcc tagacgctat ccgaatgttt tcctggaaat tgggatacgg
201 gcccattgac aacccggaaa aatgcaactg gcatttcgtc ctaacgggcg
251 aggtgtcagc gcagccgacc cagccggtta aagctgatga ggttgttggg
301 gtgccacaac cgaagaaggt ggtgatacca tcaccacctc ctcccccagc
351 tccctatttt agggctgttg gggcttttgc accaacccgg tccgggttta
401 ttcgggccac tgtggaaaga ctcacccggg aacgggaaga gtcgagagct
451 gcggcactct ttgccgaatt accattggag tatcctcagg gtgctcctct
501 gaagttgagc ctggcgatga agttcgccat gctcaaacat accacttgga
551 ggaagtggta tgacaccagt gatgaacgcc tcttggaggc tcatcctggt
601 ggtccttgtc ttcctccccc tcccccaatc caaagccctc cctcttttta
651 cgagaggaga agggaatttt gcagggtgaa gtcctgcgcc agggcttttg
701 ccctggaaac ctccctgggc ctcaataggg cttgggtagg tttggtggat
751 atccccagca cttctgtgtg ctgtgcggat ggaaggacta ccggtgggca
801 aacgattgct caagaagctg atctcttgca acatacggtc agcacatcag
851 tagcccccgg tagggcacaa tggtcctccg agcgcagaca gcttctgcga
901 aggaaagagc cagcaaatag cttgcaagtc tttgcttgtc taacagacga
951 aactnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1051 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1151 nnnnnnnnnn nnnnatggaa gagtaccggg acagaggcat gtcggctgtg
1201 gtggttgatg cgccagaaat agatgtaaac ccgtttggca tgagcgggga
1251 ttcaacggac ttgactgtcg tggcaacgta tgggcatgaa cgtgatatgg
1301 cacgtgcctt tattggttct gcttctacaa ttctaggaaa tgggttagct
1351 agagccattt tctttcctgg tttgcaatat agtcagaagg aaccaaggcg
1401 cgaatctata atccgcctat atgttgcctc aaccaatgcc actgtggaca
1451 ctgattcagt cttggcggcc attagtgttg gtaccttgcg tcaacatgtt
1501 ggctccatgc actatcgaac tgtggctagt accgtgcacc aggcccaggt
1551 gcgagggaca acacttaggg ccactatggt gggtaatact gtcgtggtgt
1601 cgcctgaagg aagcctggtt actgggaccc ctgaagcaag agttgaaatg
1651 gggggcgggt ctagtatcag gatggtggga cctctacaat gggaaagtgt
1701 ggaggaaccg gggcaaacct tctctatcag gagtcgctca cggtctgtgg
1751 ggattgacag gaatgttgat cttcctcaac ttgaggctga gcccagattg
1801 agctcaaccg tgagaggatt agctggtagg ggagtgattt atattcccaa
1851 ggattgccag gcaaataggt acttgggcac cctgaacata cgtgacatga
1901 tttcagattt taagggtgtc cagtatgaaa ggtggataac tgcaggattg
1951 gtcatgccta ctttcaagat agttattagg ctgcctgcta atgccttcac
2001 tgggttgaca tgggtgatga gctttgatgc ctacaaccgg ataactagta
2051 ggattactgc tagtgcagat cctggatacc ccttgtca