Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus isolate YMC1 polyprotein gene, complete cds.
ACC No: FJ531814
Dated: 2009-06-03 | Length: 3333 | CRC: 2043210253
ID FJ531814; SV 1; linear; genomic RNA; STD; VRL; 3333 BP.
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AC FJ531814;
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DT 03-JUN-2009 (Rel. 101, Created)
DT 03-JUN-2009 (Rel. 101, Last updated, Version 1)
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DE Grapevine fanleaf virus isolate YMC1 polyprotein gene, complete cds.
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KW .
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OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup A.
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RN [1]
RP 1-3333
RA Jawhar J., Minafra A., Boscia D., Martelli G.P.;
RT "Molecular differentiation of grapevine fanleaf virus isolates causing
RT yellow mosaic and infectious malformation";
RL Unpublished.
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RN [2]
RP 1-3333
RA Jawhar J., Minafra A., Boscia D., Martelli G.P.;
RT ;
RL Submitted (09-DEC-2008) to the EMBL/GenBank/DDBJ databases.
RL DPPMA, University of Bari, Amendola, Bari, Bari 70126, Italy
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FH Key Location/Qualifiers
FH
FT source 1. .3333
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /host="Vitis vinifera cv. italia"
FT /isolate="YMC1"
FT /mol_type="genomic RNA"
FT /country="Italy:Puglia"
FT /collection_date="2008"
FT /note="causes yellow mosaic"
FT /db_xref="taxon:12274"
FT CDS 1. .3333
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="ACR48170.1"
FT /translation="MGKFYYSSRRLACWAAGKNPHLGGSVEQWLAAIETDPSFRQTVKE
FT DVQLNRERLDAIRMFSWKVGFGPIEKPEKCDWHYVLTAEKPAQPTGPAKAQEVVVPPVR
FT VIPSPPPMPRPYFRPIGAFAPTRSGFIRATVERLSREREESRAAALFAELPLEFPQGAP
FT LKLSLAMKFAMLKHTTWRKWYDTSDERLYEAHPGGPCLSPPPPIQSPPSFYERVREFGR
FT MKSCAKAFALETFLALNKAWVGLVDIPSTSVCCADGRTTGGQTIAQEADPLQHRVSTSA
FT APGRAQWIFGGRRMLCKKEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
FT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHICAPIFYSIFLWVVNKWDGTPLGWNET
FT FNYPGVYVEGKGSFKIKIRNQKNQIPNKSFVGQNQEDLSLSNFFQIARAIVTSEGTALL
FT PILVQIDETLRPDLPLPSFEDDYFVRVDFFEIPPYKEKIEIGPCFFDFTSNTCKVSVGE
FT TPFPSINARHGLHNGVPELKTQWSLNPLFGKSSGSVTTTKLVGIKATALDGFPPVFAMQ
FT KLEGTLNLLVGNLAGAKLNTQFSLYSRWIAIKLDQALAFSAPRELGEPGTGFGFYGRTS
FT VPV"
FT mat_peptide 1. .765
FT /product="home protein"
FT /note="2A"
FT mat_peptide 766. .915
FT /product="movement protein"
FT /note="2B"
FT mat_peptide 2530. .3330
FT /product="coat protein"
FT /note="2C"
FT gap 907. .2529
FT /estimated_length=1623
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SQ Sequence 3333 BP; 418 A; 418 C; 436 G; 438 T; 1623 other;
fj531814 Length: 3333 03-JUN-2009 Type: N Check: 4101 ..
1 atgggcaagt tttattactc cagcaggcgt cttgcctgct gggctgctgg
51 taagaacccc catcttgggg gttctgttga acaatggctg gcggccattg
101 aaactgatcc ctccttccgc caaactgtta aggaggatgt ccagttgaac
151 cgggagcgcc tagacgctat ccgaatgttt tcctggaaag tgggattcgg
201 gcccattgaa aaaccggaaa aatgtgactg gcattacgtc cttacggccg
251 aaaagccagc acagccgacc gggccggcca aagcccaaga ggtggtggtg
301 ccacctgtga gggttattcc ttcaccgccc cccatgccaa ggccttattt
351 taggccaatt ggggcttttg caccaaccag gtccgggttt attcgggcca
401 ctgtggaaag actctcccgt gaaagggaag agtcgagagc tgcggcactc
451 tttgccgaac tgccattgga gtttccccaa ggggctcctt tgaagttgag
501 cttggcgatg aaatttgcca tgctcaagca taccacttgg aggaagtggt
551 atgacaccag tgatgagcgt ctctatgagg ctcatcctgg tggtccttgt
601 ctttctcctc ctcccccaat ccaaagccct ccctccttct atgagagggt
651 tagggagttt ggcaggatga agtcctgcgc caaggctttt gccttggaga
701 ctttcctggc cctcaacaag gcctgggtgg gtttggtgga catccccagc
751 acttctgtgt gctgtgcgga tgggagaact accggggggc aaacaattgc
801 tcaagaggct gatcctttgc aacatagggt cagcacatct gcagcccccg
851 gtagggctca atggatattc ggggggcgtc gtatgctctg caagaaagag
901 gaagcannnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
951 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1051 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1151 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1251 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1351 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1451 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1551 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1651 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1751 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1851 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1951 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2051 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2151 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2251 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2351 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2451 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc acatttgtgc gccaatattc
2551 tatagtattt ttttatgggt tgttaataag tgggacggga cccccttggg
2601 ttggaatgaa acctttaatt accccggggt gtatgtggaa ggaaagggaa
2651 gttttaaaat caaaattcga aatcaaaaaa accaaatacc taataaatca
2701 tttgtcggac aaaatcaaga ggacctgagc ctctcaaatt ttttccaaat
2751 agcgagggcc atagtcactt cggaaggaac cgccctactc ccaattcttg
2801 ttcaaattga cgagaccctt cgccccgacc tccctcttcc aagttttgaa
2851 gatgattatt tcgtaagggt ggattttttt gaaatccccc cttacaaaga
2901 aaaaattgag attggtcctt gtttctttga cttcacttca aacacttgta
2951 aagtgtctgt aggcgaaacc ccatttccct caataaatgc ccgtcacgga
3001 ttgcataatg gtgtccccga actcaaaacc caatggagtc tgaacccttt
3051 atttggcaag agcagtggga gcgtgaccac cacgaagctg gttggcatta
3101 aggccaccgc tttggatggt tttcccccgg tttttgccat gcagaaacta
3151 gagggaactc taaacttgtt ggttgggaac ttggcaggag ccaaactcaa
3201 cactcaattc tccctttata gccgatggat cgcaataaaa ctggatcaag
3251 ctttggcttt ttcagcaccc cgagagctgg gggaacctgg aacaggtttt
3301 ggtttttatg gaagaaccag tgtcccagtc tag