Sequence of DPV Wheat dwarf virus
Wheat dwarf virus isolate CZ6482 movement protein (MP), coat protein (CP), replication-associated protein (Rep), and replication-associated protein A (RepA) genes, complete cds.
ACC No: FJ546178
Dated: 2009-04-28 | Length: 2734 | CRC: -2086910337
ID FJ546178; SV 1; linear; genomic DNA; STD; VRL; 2734 BP.
XX
AC FJ546178;
XX
DT 28-APR-2009 (Rel. 100, Created)
DT 28-APR-2009 (Rel. 100, Last updated, Version 1)
XX
DE Wheat dwarf virus isolate CZ6482 movement protein (MP), coat protein (CP),
DE replication-associated protein (Rep), and replication-associated protein A
DE (RepA) genes, complete cds.
XX
KW .
XX
OS Wheat dwarf virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
XX
RN [1]
RP 1-2734
RX PUBMED; 19326201.
RA Kundu J.K., Gadiou S., Cervena G.;
RT "Discrimination and genetic diversity of Wheat dwarf virus in the Czech
RT Republic";
RL Virus Genes 38(3):468-474(2009).
XX
RN [2]
RP 1-2734
RA Gadiou S., Kundu J.K.;
RT ;
RL Submitted (12-DEC-2008) to the EMBL/GenBank/DDBJ databases.
RL Department of Virology, Crop Research Institute, Drnovska 507, Prague 6
RL 16106, Czech Republic
XX
FH Key Location/Qualifiers
FH
FT source 1. .2734
FT /organism="Wheat dwarf virus"
FT /host="Hordeum vulgare"
FT /isolate="CZ6482"
FT /mol_type="genomic DNA"
FT /country="Czech Republic"
FT /db_xref="taxon:10834"
FT misc_feature 1. .171
FT /note="long intergenic region; LIR"
FT gene 172. .444
FT /gene="MP"
FT CDS 172. .444
FT /codon_start=1
FT /gene="MP"
FT /product="movement protein"
FT /protein_id="ACP28883.1"
FT /translation="MDQVFTPPRSIRADQYQAPYDPGSSDYAWRTFVFVSFGLLISVGV
FT VWLAYTLFLKDCILVWKAKKQRRTEEIGYGNTPARPNGDQQGLPR"
FT gene 416. .1198
FT /gene="CP"
FT CDS 416. .1198
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /protein_id="ACP28884.1"
FT /translation="MVTNKDSRGKGKRKLEEGESSGRWKGQVYKRRKQTYKVVPVRPPA
FT LCVYRYNWLNSDKTNIVVGNTPRIDLITCFAAGKADNNRHTNQTVLYKFNLQGTCYVSD
FT SSCMFITPIRVYHWLVYDAEPKQATPDSTDIFTMPWNLLPSSWTVQRAWSHRFVVKRKW
FT CVNLVSDGRKVGSKTVDSRYNYVVGKNIVDASKFVKGLRVTTEWMNTGDGKIGDIKKGA
FT LYLVTCTRGGITGDSASISFEVVCAYTHACYFKSIGIQ"
FT misc_feature 1028. .1369
FT /note="short intergenic region; SIR"
FT gene complement(1370. .2499)
FT /gene="Rep"
FT CDS complement(join(1370. .1783,1870. .2499))
FT /codon_start=1
FT /gene="Rep"
FT /product="replication-associated protein"
FT /protein_id="ACP28885.1"
FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY
FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR
FT DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW
FT SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNEHLYSESPGRHKSIYIC
FT GPTRTGKTSWARSLGIHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF
FT TVNPKYGKRKMIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVIHYMYEGESFFAFG
FT ENVTASQ"
FT gene complement(1705. .2499)
FT /gene="RepA"
FT CDS complement(1705. .2499)
FT /codon_start=1
FT /gene="RepA"
FT /product="replication-associated protein A"
FT /protein_id="ACP28886.1"
FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY
FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNIGMNTSPFSFFHPNIQAAKDCNQVR
FT DYIMKEVDSDVNTAEWGTFVAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW
FT SIRLKDFEYTARHLFPDPVSTYTPEFPIESLMCHETIESWKNEHLYSVSLESYILCTST
FT PADKAVTDLEWMDDYSRSHRDGISPSTSAVRQEQERLPGQDL"
FT misc_feature 2500. .2734
FT /note="long intergenic region; LIR"
XX
SQ Sequence 2734 BP; 691 A; 599 C; 745 G; 699 T; 0 other;
fj546178 Length: 2734 28-APR-2009 Type: N Check: 795 ..
1 accctgcgtg gtgggtcccg aggcgcactc ggcttttcgt gagtgcgccg
51 aggcttttgg accacgtctt tatgtcatca catcaattat tggtggtgag
101 tcatcacata ttccacctgc aattatgtgc catcgcttag cttataagga
151 agtgtcgggg aaggtatctc gatggatcag gtctttacac cgccgcgttc
201 tatacgggca gatcaatacc aggcccctta cgatcccggg tcctccgact
251 acgcctggcg aacctttgtg ttcgtctcct tcggtttgtt aatatccgta
301 ggagttgttt ggttggctta cactctgttc ttgaaggatt gcatattagt
351 gtggaaggcg aagaagcaga ggaggaccga ggaaattggt tacggtaata
401 caccggccag accaaatggt gaccaacaag gactcccgag gtaagggaaa
451 gaggaagctc gaggagggcg aatcgagtgg aaggtggaag gggcaagtgt
501 ataagcggcg taagcagacc tacaaggtag tacctgtgag gccacccgcc
551 ctgtgtgtgt accggtataa ctggctcaat tcagacaaga ccaatatcgt
601 ggtgggtaac acccctcgga ttgatctgat tacctgcttt gcagcgggca
651 aggccgataa taatcggcat acaaatcaga ccgtcctcta caagtttaac
701 ctacagggga cctgttacgt gtcggactct tcatgtatgt tcataacccc
751 aatcagggtt tatcactggt tggtctatga tgcagagccg aagcaggcta
801 cgcctgactc cactgacatc tttacgatgc cttggaatct gctgccgagt
851 tcatggactg tgcagagggc ttggtcgcat cggttcgtgg tgaagaggaa
901 gtggtgcgtg aacctggtct ccgatggaag gaaggttggt tccaagacgg
951 tggactcccg ctacaactac gtagtgggga agaatatcgt tgacgcctcc
1001 aagttcgtga agggtttgcg cgtgacgacg gagtggatga acacgggtga
1051 cggcaagata ggcgatatta agaagggtgc cctgtatcta gtaacctgta
1101 ctcgtggagg tatcactgga gacagtgcct ccatttcatt cgaagttgta
1151 tgtgcctata cgcacgcgtg ttacttcaaa tccattggga ttcaataaat
1201 aaaatagtat tttattcatc tcatgtcatt cgattacaga tgctcggcta
1251 cgagcaaaga taaaccaaac tatgacatac aacacactca taaccaaaac
1301 atcgaaaaaa gaaatacaag gggcgagatc acacaatttt agaaaccgta
1351 gccgtccgcg ctaggacagt cactgcgaag cagtgacatt ttcgccgaag
1401 gcgaagaatg attcaccctc atacatataa tgtatcacag cgttagagta
1451 catgtaatcc gactgttcag gagtcatatc cttgagccaa tcttcgtctg
1501 ggttaactaa aatgatgcaa ggtataccac cccgtatcat ttttcgcttc
1551 ccgtacttag gattgacggt gaagtcacgc tgagccccga cgaagcactt
1601 ccagtttggc gtgaacttga atggaatgtc gtcaattatg ttgtacttgg
1651 cgttgacgtc ataggtcgtg aaatcaacta ggctgttgta gtagttgtgg
1701 atccctagag atcttgccca ggaagtcttt cctgttcttg tcggaccgca
1751 gatgtagatg gacttatgcc gtcccggtga ctcctggaat aatcgtccat
1801 ccactccaaa tcagttacgg ccttatccgc aggagttgaa gtacaaagga
1851 tgtatgattc gaggcttacg gagtagagat gttcattttt ccagctttca
1901 atggtctcat gacacatgag ggactcgatg ggaaactcag gtgtgtaagt
1951 gctaactggg tctgggaata ggtggcgtgc agtgtattcg aagtctttca
2001 gacggataga ccattcaaac ggaaaacgat ggcagaccat gctgagaaat
2051 tcctctctcg aggtactcga ctcaatgatc tgtttcatat ccgcgtctcg
2101 gtctttacga cccggagtgg taactgctac gaatgttccc cactcagccg
2151 tgttgacatc ggagtcaacc tccttcatga tgtaatcacg aacttggttg
2201 cagtctttgg cagcttgaat gttaggatga aaaaatgaaa atggtgatgt
2251 gttcatacca atgttgagag cattgggatt ggtgatggaa gcacgaagct
2301 tgttttgcac gagtacgtgc agatgtggtg atccatcttc gtggagttcc
2351 ctaactgcag ctatgtacag aggttcatat ttggccaaga gagtgcgaag
2401 agagtccaag gcgtactgtg gctctaggat gcattgagga tatgttagga
2451 agaggtattt ggaatagaca cggaacctgg gtgcagatga agaggccata
2501 gtagcaagca gaagcccggc aggtccttag cgaaaaaacg gggtgtgctc
2551 ctgaactcta ctctctaccc tgcgtgggag tgtgcagaat tcacaccgat
2601 gggctcggtg tccacggttt aaatattgca ggtttaggtg ggaacgcggg
2651 accctgtctt ttcggcgcga aagcgacggg tggtcccgcg tgtggtttgt
2701 ggctcgggga cccgccacgc aggaatctaa tatt