Sequence of DPV Sweetpotato badnavirus B
Sweetpotato badnavirus B, complete genome.
ACC No: FJ560944
Dated: 2009-05-25 | Length: 7961 | CRC: 389330469
ID FJ560944; SV 1; linear; genomic DNA; STD; VRL; 7961 BP.
XX
AC FJ560944;
XX
DT 25-MAY-2009 (Rel. 100, Created)
DT 25-MAY-2009 (Rel. 100, Last updated, Version 1)
XX
DE Sweetpotato badnavirus B, complete genome.
XX
KW .
XX
OS Sweetpotato badnavirus B
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7961
RX PUBMED; 19394993.
RA Kreuze J.F., Perez A., Untiveros M., Quispe D., Fuentes S., Barker I.,
RA Simon R.;
RT "Complete viral genome sequence and discovery of novel viruses by deep
RT sequencing of small RNAs: a generic method for diagnosis, discovery and
RT sequencing of viruses";
RL Virology 388(1):1-7(2009).
XX
RN [2]
RP 1-7961
RA Kreuze J.F., Perez A.;
RT ;
RL Submitted (17-DEC-2008) to the EMBL/GenBank/DDBJ databases.
RL germplasm enhancement and crop improvement, International Potato Center
RL (CIP), Avenida la Molina 1895, Lima Lima 12, Peru
XX
FH Key Location/Qualifiers
FH
FT source 1. .7961
FT /organism="Sweetpotato badnavirus B"
FT /isolate="Huachano1"
FT /mol_type="genomic DNA"
FT /country="Peru"
FT /isolation_source="sweet potato cv. Huachano"
FT /db_xref="taxon:647294"
FT CDS 703. .1131
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF1; conserved Badnavirus ORF"
FT /protein_id="ACN56748.1"
FT /translation="MSERWEKSLQDWYDSRRSHLEYLDLETVSKPSLSQLAHNLSIVRD
FT NNNLHTKVLLKRCYVLEEKLEEQSLLIKRLEKGLEALTEEFLSSRPLTAKQVKELVVEI
FT AEQPKLVEQEALKLTEELKGKLDKVEGLIKDLKEFITG"
FT CDS 1128. .1589
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /protein_id="ACN56749.1"
FT /translation="MNYKEIQDLPGFNRALTGTASLGAEGFTQPSGKTQSSLDTLIRQN
FT NTLLFLTGTIEDRVQGIEEELVEIRKAIFXKGKDPDLSGVVSQLQQLTIKGKAPEPRGV
FT LRVQQDPYLQIRRQINEENRGRTSYRSRSSRRSSEPPRRTPDPLRGSNP"
FT CDS 1486. .4998
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF3a; contains movement protein and coat protein
FT domains"
FT /protein_id="ACN56750.1"
FT /translation="MRRTGAAPVTEAALQGGAQNLQEGRPILYEDQIRDYRRMAEARYQ
FT LQRRVARVLGRPYRRTLERLMNPDQNLEDSLSRRARIVPAEVLYSSGEGPEHQRVYIHR
FT SEEEITCVDGQQVDLPLITPESHQQLLRQQYRFIHIGAIQVRVQALHRAHQGTMVLVLN
FT TDRRWNGDQALFGGVEGDLTEGAFMTYVIPNITMTVEDFCRSIMVEFQTRGYSEWVQGA
FT NLLITRGMVGRLSNTPNVGFNYNISAVTDYLASRGVRTLPGRRYSTADLQGLRWNIRRP
FT REVIPRHPTEMISRNLLGGGFSLSFREYQPITTEQRRAAQHPEEDSLEEEVLGVLNVEV
FT LDWDGLDFPEPDPTLVNFEIPEPEPQQQHPEQVVEPVSDEILEFRREYSSIWDYGSEEE
FT ALLEFVYYSTTPDDSNYWSYSNAYRELAAALEGNVSPNDVEGLEEVEGGTSTHFSGGGE
FT VVPPSEPNCCIMCNKRGIPEDKILCQNCMDITDDSDDEREVERQERKRMQKQKEKRVTP
FT STSKQTSQEEIIGAIEGDPWEEFEEMVERLHAQVTQQQPNPPADPQASNTRGQSAQSPY
FT RPPEDTTMGQPSYAPARPTVETVSGPPSFRTDSRFLKRGTNNENWSLPPAQQQGGVLLT
FT LPEQMGLLNDVFMRWETTTLNHMSLMNIQDTQEKVDYMENLLGETAKLAWIQWRTVYED
FT EYKAIVAQAEGRMGTQNVISQVRRILTLSDPVQGSTAIQDQAYRDLERLQCHDVKDMVK
FT FLNDYMRLATKTGRLYIGRELSDKLWIKMPGDLGTKIKEEFDKKHPGAEIAVIPRIFFA
FT HKYLEDRCKEAAFTRSLKSVSFCKDIPIQGYYGSDKPKYTPRKAKTYKGKPHETHVRID
FT RRKNLDRNSHCKCFICEEPGHYARDCPNQKRNIKRVMMFNQVNIPDNYDIVSVQENEED
FT SDAIYSLTEGEEGDEIAFGIVQESVHMISHQVIGSWRAHIDMSEVQKVCRHQWQDHQEI
FT EAPGEDTCLWCKHHINIRTRSHCPACLLTTCNICSLRYLGREVPPKAQERPLPFPDQTA
FT LIQQQQLYMNWADQDRARLKQEVEDEKRRGQLLFEAERRRTERLGEEIAQQKLRIESME
FT EEQKLKNDLHAHTERDLQKKIKELKRLLREEKIKRRSLRNGKDVRTGSSEDDASSEEAS
FT GSEN"
FT CDS 5166. .7481
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF3b; contains aspartic protease and RNaseH/reverse
FT transcriptase domains"
FT /protein_id="ACN56751.1"
FT /translation="MRVSIRIRGCPEFNVNAILDTGATVCCIEEERVPKEGLEESRMTA
FT QFTGLNSTQQTRKKLKEGYMIIADHTFPLPFVYALNPMRIGRGIQFIIGCNFIRRMKGG
FT LRIEGPTVTFYRNVSTIETQEKSTVAAXIGNINEERTMVFPRFRKEVARLIQEGYIGEN
FT PLRHWSKNKVECTLRIKNPDLVIQDPPLKHVTPAAREFFQNQVSSLIKAQLIRPSRSRH
FT RTTAFMVESGTSVDPKTGKEVRGKQRMVLNYKRLNDNTEKDQYSLPGINTIISRVAGKK
FT VFSKFDLKSGFHQIRMSKESIPWTAFWTPDGLYEFLVMPFGLVNAPADFQRKMDNAFRG
FT TEAFIAVYIDDILIFSETEEDHEQHLLKFAQIVEKNGLILSPTKMKIGVKSVDFLGVKI
FT HQNKVQLQEHILKKIGDFREEDLLTKKGLRSWLGILNYARQHIPNLGKMLGPLYGKTSP
FT TGEIRFNAQDWKLVREIKRKIQQLPPLEIPPKDCCIVLEADGCMDGWGAICKWKQFAYD
FT PRSKERITAYASGKFQPIKSTIDAEIFAIMNAMEAFKIYYLDKKEMVIRTDCQAIVSFF
FT NKSASNKPSRARWISFTDYITGTGIKIRIEHIDGKDNTLADYLSRLVFSLIIAEWKTQG
FT RRSTAHHQAQSMAQTIGSCSKQQEPLLLREPPLKQEQEGTGEGPWGIEQLTLPLERLLK
FT GLKTGPYKNKLIIGTGLMNSLKIALRILDLSPEVIISTYKLKEGYSEMGSQEMSVHNLQ
FT LIDSPYCMKRPRRPGEAS"
FT CDS 7055. .7636
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF4"
FT /protein_id="ACN56752.1"
FT /translation="MENARQEINSPPSSPVNGPNHRVMQQAARAFALERATVEAGARRN
FT RGRPMGHRAVNPATRTPAQRFEDWSLQEQTYHRDWINEQFEDSLANLGPLARGYNFNIQ
FT IERRLFRDGLSGDVGTQLAANRLSLLHEAAQEARRSVMTLQRMIRDRAEHNERFVTRDN
FT AYMDLRQPYAEAQAQIEAAAIILMACIEDL"
XX
SQ Sequence 7961 BP; 2603 A; 1610 C; 1910 G; 1835 T; 3 other;
fj560944 Length: 7961 25-MAY-2009 Type: N Check: 3628 ..
1 tcggcaaaat catcacgact gagccgacga tccatagttt gtaaaatttc
51 cgctgtgctg tgcaatccct tattggtatc agagcgagta tcagtctgta
101 agtacttgct cttagtttgt tatttatggc aggctaagcc taccgtcggg
151 gaaagaggtc cctgacagta gagtctcacg ccggtccttt gttttcaatg
201 tttgtattat aacgttataa gcatttttaa tgaaagacat tttgatatac
251 gcttgaatgt ttatctttcg gcttagtaag ttatcttgtt ctgctagtaa
301 atgttttata ttcctgagta aagaatatat tatttgaaca atattcgcta
351 gtaaagaact tcgctagtaa gggtcaatcg ataaaatcat ctgtttttcc
401 aawttcccac gatcgttatg agggcaaaag acgtaagttg cagtaagtcc
451 acagggatgg ccgtgagtcg atgaaaaggt gagtccaaga tgaacaggaa
501 aggagattgg aaaaacactg attgtaagat taatactctg aaaggtcttt
551 cttgaaaggt ttttgtttaa ataataaatt tgatgatgtt tagtcttttg
601 ggaatataat ccattgaaag atttcaagtt tgctgaaaag agagcttata
651 tcaacgtgtt tgaatttgtc tttgcttatg acctttataa tcttttgaaa
701 acatgtctga aagatgggag aaatcccttc aggactggta tgattctcga
751 aggtcacacc tcgagtacct tgatttagaa actgttagta aaccttcgct
801 tagccaatta gctcataatc ttagtattgt tagagataac aacaacctac
851 atactaaagt cctactaaaa cgttgttacg ttttagaaga aaaattggaa
901 gagcagtctc ttctgattaa aaggttagaa aaaggcttag aagccttaac
951 tgaggagttt ttatcctcaa gaccccttac cgcaaaacaa gttaaggagt
1001 tggttgttga aatagcggaa caaccaaagc ttgtagagca ggaagcgcta
1051 aagctcactg aggagcttaa aggaaaactt gataaggttg aaggccttat
1101 caaggattta aaggagttca ttactggatg aactacaagg agatccagga
1151 tctgcctgga tttaacaggg cgttaactgg aacagcgtcc ttgggagcag
1201 aaggcttcac ccagccttca ggaaaaactc agtccagtct cgacacctta
1251 ataagacaga acaatacgct tctgttctta acagggacca ttgaagatag
1301 ggtccaaggt atcgaggagg agctagtgga aatcagaaag gcgattttca
1351 ytaagggaaa agatccagat ctgtctggag tcgtaagtca acttcagcag
1401 ttgacgataa agggaaaggc tccagaaccc cgaggagtct taagggtgca
1451 acaagacccc tatctgcaaa ttaggaggca gataaatgag gagaacaggg
1501 gccgcaccag ttacagaagc cgctcttcaa ggaggagctc agaacctcca
1551 agaaggacgc ccgatcctct acgaggatca aatccgtgac tacaggcgaa
1601 tggcagaggc acgataccag ctgcagcgtc gggtagctcg tgtcctagga
1651 aggccatata gaaggacgct ggaaaggctt atgaatccag atcaaaacct
1701 ggaggattca ttaagcagaa gggccagaat agtacctgct gaggtactct
1751 attcttcagg cgaagggcct gaacatcaaa gggtgtacat ccacagaagt
1801 gaagaagaaa taacctgtgt ggatggtcaa caagtggatt tgccacttat
1851 caccccagaa agccatcaac agctgcttag gcagcaatat cgcttcattc
1901 atattggagc aatacaggtg agggtgcagg cgttgcatcg agcacaccaa
1951 gggactatgg tactagtcct taatacagac cgacggtgga acggagatca
2001 ggctctgttc ggaggtgttg aaggtgacct tacggaaggt gccttcatga
2051 catatgtaat ccccaacatt acaatgactg ttgaggattt ctgccgatca
2101 ataatggtag aattccagac aaggggatac agtgagtggg ttcaaggagc
2151 gaacctgcta atcacaaggg gtatggtagg aaggttatcc aacactccaa
2201 acgttggatt taattacaac atctcggcag taacagacta cttggccagc
2251 agaggtgtac gaaccctacc tggaagaaga tatagtacgg ctgatctcca
2301 gggcctaagg tggaacataa gaagacctcg tgaggtcatc cccagacacc
2351 caacggagat gataagcaga aatctcctag gaggaggatt ttccctatct
2401 tttagggaat accagccgat aacaacagag cagagaagag ctgctcagca
2451 cccagaagag gactccttgg aagaagaagt cctgggtgtt ctaaatgtag
2501 aagtcttgga ctgggatggt ctagacttcc ctgaacctga tccaactctg
2551 gttaattttg aaataccaga accagagccc caacaacaac accctgaaca
2601 ggttgtagaa cctgtatctg acgaaatact ggaatttaga agagaatatt
2651 ccagtatatg ggattatgga tcagaagaag aagcgctgct agagtttgtt
2701 tattactcaa caactccaga tgatagcaat tactggtctt acagtaatgc
2751 ttacagagaa cttgcagctg ctctagaagg aaacgtctca ccaaacgacg
2801 tggaaggttt ggaagaagtg gaaggtggaa cttccactca tttttccggg
2851 ggaggagagg tagtaccccc atcagaacca aattgttgta ttatgtgcaa
2901 caaaagaggc atccccgaag ataaaattct ctgccagaat tgcatggaca
2951 tcactgatga cagtgatgat gaacgagaag tagaaaggca ggaacgaaaa
3001 aggatgcaga aacaaaagga aaagagggta accccctcta cttctaaaca
3051 aacttcccaa gaggaaatta ttggagccat tgaaggtgat ccttgggaag
3101 aatttgaaga gatggtagaa aggctgcatg cgcaggtgac acagcagcaa
3151 cctaaccccc ctgctgaccc acaagcatca aacaccaggg gacaatcagc
3201 tcagtcacca tacaggcccc cagaagatac aactatgggc caaccatcat
3251 atgctccagc cagaccaact gtggaaacag tatcgggacc gcctagcttt
3301 aggacggact caaggttcct aaaaagggga accaacaatg aaaattggtc
3351 tctaccacca gcccaacaac aagggggagt acttctaaca ctccctgaac
3401 aaatggggct gctgaatgat gtattcatga gatgggagac tacaactctc
3451 aaccatatgt ccctcatgaa tatacaagat actcaggaga aagtagatta
3501 tatggaaaat ctacttggag agactgccaa actggcttgg atccagtgga
3551 ggacagtcta tgaggatgaa tacaaggcca ttgtggctca agctgaaggg
3601 agaatgggaa cacagaatgt catctcccaa gtaaggcgaa tcctcacctt
3651 aagtgaccca gtacaggggt caacagctat acaggaccag gcctatagag
3701 accttgaaag gcttcagtgc catgacgtca aggatatggt caagttcctc
3751 aatgactata tgaggcttgc cacaaaaact ggtcgactgt acataggaag
3801 agagctttct gacaagctct ggatcaaaat gcccggggat cttggaacca
3851 agatcaagga agaatttgat aaaaaacatc ccggagcaga aatagctgtc
3901 attccgcgca tattctttgc gcataaatat cttgaggata ggtgtaagga
3951 agccgccttc accagaagcc taaagagtgt gtctttctgc aaagacatac
4001 caatccaagg atattacggg agtgataagc ccaaatatac ccccagaaaa
4051 gcaaagacgt ataaggggaa gccgcatgaa actcatgtga gaatcgatag
4101 gcggaaaaac ctggacagaa actcgcactg caagtgtttc atatgcgagg
4151 aacctgggca ctatgcaaga gattgcccaa atcagaaaag gaacatcaag
4201 cgggtaatga tgttcaacca ggttaacata ccggacaatt atgatattgt
4251 ctcggtacaa gaaaatgaag aagatagcga cgctatctat agcctgactg
4301 aaggagaaga aggtgatgag attgccttcg gaattgtaca ggaatctgta
4351 catatgatca gtcatcaggt gatagggtca tggagggccc acattgacat
4401 gagcgaagta cagaaggtct gccgccatca atggcaggac caccaggaga
4451 tagaagctcc aggagaagat acttgcctct ggtgcaagca tcacattaac
4501 atcaggacaa ggagccattg ccctgcatgt ttgctcacaa cctgcaacat
4551 ctgttcgttg cgatatttgg gaagagaagt cccaccaaag gctcaagaaa
4601 ggcctttgcc tttcccagac cagactgccc taatacaaca acaacagctc
4651 tacatgaatt gggcagatca ggatcgtgca cgcctcaaac aggaggtaga
4701 agatgagaaa agaagaggac agctcctctt cgaagctgaa aggagacgaa
4751 ccgaaaggct cggtgaggaa atcgctcagc aaaaactgag gattgaatcc
4801 atggaggaag aacaaaagct gaagaatgac ctccatgctc atactgaaag
4851 ggatcttcag aagaagatca aagagttaaa gaggctgtta agagaggaaa
4901 aaattaaaag gagaagcctc aggaatggaa aggatgtcag aacaggaagt
4951 tctgaagatg atgcttcatc tgaggaggca tcaggatcgg aaaactagca
5001 agggagcagg atgagtatgg tggctcctgt tctcaaaacc atgaatccac
5051 catagtctgt gaggaacttt atcctcaatc tgagatcgta ggagtgataa
5101 aagatgccat atcctctcag atcatatcat cggcatcagg agagctaaat
5151 aatagactct acaacatgag agtctctatc agaatacgag gttgtccgga
5201 gttcaatgta aacgccattt tagatacagg ggcaacagtt tgctgcattg
5251 aagaagaaag agtccctaaa gaaggacttg aggaaagcag gatgacggct
5301 cagtttacgg gcctaaattc tacacagcaa acaaggaaga agctgaagga
5351 gggatatatg atcattgctg atcatacttt tccacttcct ttcgtatatg
5401 ctctcaaccc catgaggata ggacgaggta tccaattcat aattgggtgc
5451 aatttcatca gaagaatgaa agggggtctc cgaatagaag gaccaacagt
5501 taccttctat cgaaacgtgt ctactataga gacacaggag aaatcaactg
5551 tagcggctgs cattggaaac atcaatgaag aaaggaccat ggttttccca
5601 aggttcagaa aggaggtagc cagactaatt caagaggggt atataggaga
5651 aaaccctctt agacattggt ctaaaaataa ggtggaatgc acgctcagga
5701 ttaaaaaccc tgatctagtc atacaggacc cacctctgaa gcatgtaacg
5751 ccagctgcaa gagagttctt ccagaaccaa gtaagcagct tgatcaaggc
5801 tcagctcata aggccttcaa ggagcaggca caggaccact gcctttatgg
5851 ttgaatctgg aaccagtgtg gatccaaaaa caggaaaaga ggtcagaggc
5901 aagcaacgga tggtgctcaa ttataaacgc ctcaatgata acactgaaaa
5951 ggatcaatat tccttaccag gcatcaacac tatcatcagc cgggtagcag
6001 ggaagaaggt cttttctaaa tttgacctca aatcaggctt ccaccagatc
6051 agaatgagta aagagtccat accctggact gctttctgga ctcctgatgg
6101 gctttacgaa ttcctcgtaa tgccatttgg gctggtaaat gcgccagcag
6151 attttcagag aaaaatggac aatgccttta ggggaacaga ggcgttcatt
6201 gcagtctaca tagatgatat cctcatcttc tctgaaacag aagaggacca
6251 tgagcaacat ttgctcaaat tcgcccaaat agtagaaaag aatgggctca
6301 ttctaagccc aacaaagatg aagattgggg taaaaagtgt ggacttctta
6351 ggagttaaga tccaccagaa caaggtccaa ttacaagagc atatccttaa
6401 aaaaattgga gatttcaggg aagaggatct gctaacaaag aaagggctaa
6451 gatcgtggtt aggaattctc aattatgcaa ggcaacatat tcctaatcta
6501 ggaaaaatgt taggcccatt atacgggaaa acctcaccca ctggagaaat
6551 aaggtttaat gcccaggatt ggaagttggt cagagaaata aaaagaaaaa
6601 ttcaacaact tcctcctttg gaaatccccc ccaaggactg ctgtatagtc
6651 cttgaagctg atggatgcat ggatggatgg ggagccattt gcaagtggaa
6701 acagtttgca tatgatccgc gctcaaaaga acgcattaca gcatatgcat
6751 ctggcaaatt tcagccaatt aaatcaacaa ttgatgctga aatctttgcg
6801 attatgaatg caatggaagc tttcaagata tattatcttg ataaaaagga
6851 aatggtgata aggacagatt gccaagcaat tgtgtccttc tttaacaaaa
6901 gtgcttccaa caagccaagt agggcacggt ggatttcctt caccgactac
6951 attactggga ctgggattaa gataaggata gagcatatag atggcaagga
7001 taacactctt gcagattatt tatccaggct ggtcttttct cttattattg
7051 cagaatggaa aacgcaaggc aggagatcaa cagcccacca tcaagcccag
7101 tcaatggccc aaaccatagg gtcatgcagc aagcagcaag agcctttgct
7151 cttgagagag ccaccgttga agcaggagca agaaggaaca ggggaaggcc
7201 catggggcat agagcagtta accctgccac tagaacgcct gctcaaaggt
7251 ttgaagactg gtccctacaa gaacaaactt atcataggga ctggattaat
7301 gaacagtttg aagatagcct tgcgaatctt ggacctctcg cccgaggtta
7351 taatttcaac atacaaattg aaagaaggct attccgagat gggctctcag
7401 gagatgtcgg tacacaactt gcagctaatc gactctccct actgcatgaa
7451 gcggcccagg aggccaggag aagcgtcatg acgcttcaaa gaatgattag
7501 ggatcgggct gaacataacg aaaggttcgt cactagggac aacgcctata
7551 tggacctcag gcagccatac gctgaagccc aagcccagat tgaagcagcg
7601 gccataatcc ttatggcctg cattgaggat ctttaggttg cttaacctaa
7651 agagacgaca gaggacggtg gtaggtccgg acaacgacgc cacctttatc
7701 cgccatgtga tgcggcatgt gcatcatttg tttttgtcgg ccatttgctg
7751 actttagagt ctagggtttg tgaaaagcag atgcttctcg gtgaagtgag
7801 acttttcttt aggaaaagta aagataagaa aggaatctta tcttactttg
7851 tcggccacct tacttttgga catttagcgt gttgtgaaga aaaatttcct
7901 atataaggaa ccattttctt tcatcaaaca gacagaagta acaagtaaca
7951 cacaaaagaa a